prot_C-linearis_contig103.827.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig103.827.1
Unique Nameprot_C-linearis_contig103.827.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length505
Homology
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BLAST of mRNA_C-linearis_contig103.827.1 vs. uniprot
Match: D8LKD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD5_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.060e-11
Identity = 81/131 (61.83%), Postives = 92/131 (70.23%), Query Frame = 0 
Query:   26 GGPGISLSRARSAGFKP-SEGEGDLIDEFDFACQDRGQP----YFGGADSIDGHQQQSQGRSIAASGAPAGHRGYASSGDEGRSSESXXXXXXXXXXXXXXXXXXXXXXXXGLGVGMNVEPHSLLAAAAAS 151
            GGPGISL+RARSAG +     + D + E DF CQ+RGQ     + GG    D    + Q RSI+AS       GY SSGDEGRSSE XXXXXXXXXXXXXXXXXXXXXXX GLG+GMNVEPHSLL A +A+
Sbjct:  377 GGPGISLARARSAGGEAYGRDDEDFVAELDFVCQERGQQQQQSHDGGDSDGDAVTCRQQARSISAS-------GYGSSGDEGRSSEXXXXXXXXXXXXXXXXXXXXXXXXMGLGLGMNVEPHSLLTAVSAT 500
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.827.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKD5_ECTSI3.060e-1161.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:174761..188058 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.827.1mRNA_C-linearis_contig103.827.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig103 174761..188058 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig103.827.1 ID=prot_C-linearis_contig103.827.1|Name=mRNA_C-linearis_contig103.827.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=505bp
MARSSTDEVQGSGVGGGVGRGMGVSGGPGISLSRARSAGFKPSEGEGDLI
DEFDFACQDRGQPYFGGADSIDGHQQQSQGRSIAASGAPAGHRGYASSGD
EGRSSESGHGSTSDEGVMAEAGLTLTSQEAIGLGVGMNVEPHSLLAAAAA
SQGESTEYIPPAARGEFGGAGKYIPPAMRAAARAEAAAAATGGASGGGGS
RRPQNDPEDGPFDLPVGSMDTDFGFGPPSASGAAPTRTPQQQPPPPPPPP
PPPPSFLSSQQPFPGDGSCPAPPLAVPFPDPSSASAFGPGGGGIVGPLVG
GGGGLGSARGTGLYPWTPADKEHYYTGDYHARRPCDPESRCNVKGGGCGG
GPVPTESPVAACSGYDDPIQQQEQEQRQQAGPAGAAGVGDEPEGLDLRHE
GVGEGAEVGGLPRGGGGEGLWWTCGAWSIMGRREKQEDRFCVMPDYTKSV
AHVFLDETYSSGGGGGNGGGTGGGRSSVGCSSAGGFDERSSSAGAAGDRD
SVGVG
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