mRNA_C-linearis_contig103.827.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig103.827.1 vs. uniprot
Match: D8LKD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD5_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 3.060e-11 Identity = 81/131 (61.83%), Postives = 92/131 (70.23%), Query Frame = 1
Query: 76 GGPGISLSRARSAGFKP-SEGEGDLIDEFDFACQDRGQP----YFGGADSIDGHQQQSQGRSIAASGAPAGHRGYASSGDEGRSSESXXXXXXXXXXXXXXXXXXXXXXXXGLGVGMNVEPHSLLAAAAAS 453
GGPGISL+RARSAG + + D + E DF CQ+RGQ + GG D + Q RSI+AS GY SSGDEGRSSE XXXXXXXXXXXXXXXXXXXXXXX GLG+GMNVEPHSLL A +A+
Sbjct: 377 GGPGISLARARSAGGEAYGRDDEDFVAELDFVCQERGQQQQQSHDGGDSDGDAVTCRQQARSISAS-------GYGSSGDEGRSSEXXXXXXXXXXXXXXXXXXXXXXXXMGLGLGMNVEPHSLLTAVSAT 500 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.827.1 >prot_C-linearis_contig103.827.1 ID=prot_C-linearis_contig103.827.1|Name=mRNA_C-linearis_contig103.827.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=505bp MARSSTDEVQGSGVGGGVGRGMGVSGGPGISLSRARSAGFKPSEGEGDLIback to top mRNA from alignment at C-linearis_contig103:174761..188058- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.827.1 ID=mRNA_C-linearis_contig103.827.1|Name=mRNA_C-linearis_contig103.827.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=13298bp|location=Sequence derived from alignment at C-linearis_contig103:174761..188058- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:174761..188058- >mRNA_C-linearis_contig103.827.1 ID=mRNA_C-linearis_contig103.827.1|Name=mRNA_C-linearis_contig103.827.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3030bp|location=Sequence derived from alignment at C-linearis_contig103:174761..188058- (Chordaria linearis ClinC8C monoicous)back to top |