mRNA_C-linearis_contig103.825.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig103.825.1 vs. uniprot
Match: D8LKD1_ECTSI (Aardvark n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD1_ECTSI) HSP 1 Score: 463 bits (1191), Expect = 4.590e-134 Identity = 659/1175 (56.09%), Postives = 744/1175 (63.32%), Query Frame = 1
Query: 454 MFGRKRGAKGXXXXXXXXXXXXXXXXXXXXKKAVRRLLDKPGPDRMADVASMAALENVKPFDRSALGEADACDAVAIVMAMFPDHRLIQVEACKAVEALADGNGENVQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLFHGEANIEKARNQDKDNPARCKDSKIPRNNCSRNLGRGRACELVTGALRQFPMDQDVQIEACGAVANLANNSKSNRAKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIRTRGKQALLWLTTKSNSKKPQSTNKLTGPKTRRENARSKEKFRAKSFSTSSVGGPGG--GNRGYRGGEEQEDYGSSDGEMEDVIFETEDD------------YSDSVTSFGDDEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQEGWEDDDVASMASSVDYGGLASTGPVPPAAEVAG----GRHSXXXXXXXXXXXXXXXXXXXXXXXXXXXAAIGVV---PTPPNNRPRSKAEQPIGALLEDFDSDGEGSYGPGSG----VESVEVAAQDHLQAVAESEPVAGGGKVAVGPSPPKVQAPSPDMIIGSGGDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARESASRAGGDPATRNSTAAHVSAATTGVEEWDADGFEANDTDSAVPPAREAMQQLERAAARVVRGERAAAAPGSGYHRGTESRGGSRSSNAGVSRRSSAAEGSAMSSGAVPLPTDFPGDVRDSGGHGSRSEVSFGSARSSSHRRRQSAAELLLDPAMASAPESAKLIHEDEAVARSLQTITGRDPVWFANMLPNVERLVQRSREMEAATWEVRDNLLRSKDSPLKGSARRREYFDVLYLGLCGAHIAAAVVARGGIVADSKDGWLRKASALVRIVCLACPCAKSGVELLGQALQLADRVKMADYLEQVAKSSKTPRDVSYLVEHATLQLL-REGRAETDRRSLDAMKAFDNPTDEWLPAWLLEEAAVEGDQHDGSVFVVPNRASGPPETEYARRAAMVDGCTIIKAIGKRSLRKMEREDDKVAVLVEAVARSIAKTTGG 3900
MFGRKRGAK KKAV+RLL+KPGP+RMA +A++AA EN+ PF+ SALGEADAC+AVA VM+MFP+HR +QVEAC+AVEALADG ENVQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NLF GE LANNSKSNR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RG+QAL WL++K+ S KLTGP++RR+ AR + + + SF SS G GNRG RGG +QE GS D + +TEDD DS TS+G D+ XXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXX W+DD + S+ SSV G A + A V G G +G+V P PP NRP S+AEQP+GALLEDFDSDGEG+YGP +E +GGGK AVGPSPP+ Q XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + +D PP R AM Q GS HR SRG S +AG SR+SS + S S+GAV +P++FP + S SRSE SFGS SS+ RRR SA E+L+ PAMA A + L+ +DEAVA +LQTITG++PVWF M+ NVERLVQRS EME+ L R KDSP + R EYFDVLY GLCGAHIAAAVVARGGIVA+SKDGWLRKASALVRIVCLACP K GVELLG+ALQLA+R KMAD++E VAKSS++PR VS L E L+L+ EGRAE D +SL+AM+ ++PTDEWLP WLLEEAAVEGDQ DG V V RA G P TE ARRAA+VDGCT+IK IGKRS+ K+ +++K V + A+ G
Sbjct: 1 MFGRKRGAKASRGASKGNAKA---------KKAVKRLLEKPGPERMAVLANLAAAENLHPFNGSALGEADACNAVATVMSMFPEHRQVQVEACRAVEALADGTEENVQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNLFSGEXXXX-------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLANNSKSNRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGEQALEWLSSKNRVGTTLSMKKLTGPESRRQQARVRART-SSSFGGSSFGAGDNTRGNRG-RGGRDQERKGSFDS-----VDDTEDDDXXXXXXXXXXXXYDSATSYGGDDXXXXXXXXXXXXXXXXXXXXXXXXXGPLEXXXXXXXXXXXXXXWDDDGM-SVVSSVVSTGKAGKKMMMTGATVLGSDGNGEEEEAHSRQSSAELTKVVTPVAVTAPIPSTVPLGIVGLAPVPPPNRPLSRAEQPMGALLEDFDSDGEGNYGPXXXEXXXXXXXXXXXXXXXXXXXXNEQASGGGKDAVGPSPPRAQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--------DDVQQVAPPTRSAMAQR-----------------GSSGHRKEGSRGSQSSRSAGGSRKSSMTDMSLRSAGAVSVPSEFPSKQKFS----SRSERSFGSGLSSA-RRRMSAEEVLMTPAMAMASAVSGLVRKDEAVAYTLQTITGKNPVWFPGMVTNVERLVQRSIEMESVMVAALSELRRFKDSPYDDTLARGEYFDVLYRGLCGAHIAAAVVARGGIVAESKDGWLRKASALVRIVCLACPSIKPGVELLGKALQLAERDKMADHVEHVAKSSRSPRHVSSLAEQTALRLVFEEGRAEADEKSLEAMRRLEHPTDEWLPVWLLEEAAVEGDQGDGGVVVAGLRARGAPGTETARRAAVVDGCTMIKEIGKRSVYKIVMQENKEGRFGAEVGKKAARAGRG 1103
BLAST of mRNA_C-linearis_contig103.825.1 vs. uniprot
Match: A0A6H5L1U6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U6_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 5.380e-7 Identity = 94/250 (37.60%), Postives = 111/250 (44.40%), Query Frame = 1
Query: 6058 AGSSVASDANGLPEENMFFNXXXXXXXXXXXXXXXXXHSRGSSCSKDSMSEALARHTRPTSRGSGSIRGGNRQETP----AELAEAEAEANSRNSYNRSVAAAVSA--NPGYADSACGSVAVLDR----------PFDAHHPDYDDDDLGKGK------AAKKMAVSGRGDGHSHRTSHGGGGHSRKDGSGSPERSSSXXXXXXXXXXXXXXXXXXXXXXXXGRRPQRDAPSSPAGYIHNAEKHARRRQE 6741
+G+S + +NGLPEENMFF XXXXXXXX +H R +SR R +QE P AE A + R SY S+AAA A NPGYADSACGSV +LDR P+D D G G AA A SGRGDG G R SGS ERS+S R+ ++ PSSPAG+IH AE+ ARRRQE
Sbjct: 675 SGNSDKNASNGLPEENMFFMRKQKTKWRGXXXXXXXXXXXXXXXXXXXX-RLREKHQRSSSRTRLHDRITEQQEPPGVGAAEAARLREASEERKSYGGSIAAAAKAVANPGYADSACGSVVILDRESGMGLSVLNPYDEVVVDRTGSGSGGGNKVAIFAAAPSAASSGRGDGRPSAVVAATGATGR---SGSRERSNSSGL----------------------RQLEQRRPSSPAGHIHTAEQKARRRQE 898 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.825.1 >prot_C-linearis_contig103.825.1 ID=prot_C-linearis_contig103.825.1|Name=mRNA_C-linearis_contig103.825.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=2244bp MFGRKRGAKGSKGGGSRGAKSRKAKKNTKAKKAVRRLLDKPGPDRMADVAback to top mRNA from alignment at C-linearis_contig103:138239..169183+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.825.1 ID=mRNA_C-linearis_contig103.825.1|Name=mRNA_C-linearis_contig103.825.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=30945bp|location=Sequence derived from alignment at C-linearis_contig103:138239..169183+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:138239..169183+ >mRNA_C-linearis_contig103.825.1 ID=mRNA_C-linearis_contig103.825.1|Name=mRNA_C-linearis_contig103.825.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=13464bp|location=Sequence derived from alignment at C-linearis_contig103:138239..169183+ (Chordaria linearis ClinC8C monoicous)back to top |