mRNA_C-linearis_contig103.820.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig103.820.1
Unique NamemRNA_C-linearis_contig103.820.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:95532..96395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size308
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927373.0099323-CDS-C-linearis_contig103:95531..955931622927373.0099323-CDS-C-linearis_contig103:95531..95593Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 95532..95593 +
1690879661.2036633-CDS-C-linearis_contig103:95531..955931690879661.2036633-CDS-C-linearis_contig103:95531..95593Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 95532..95593 +
1622927373.019845-CDS-C-linearis_contig103:96149..963931622927373.019845-CDS-C-linearis_contig103:96149..96393Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 96150..96393 +
1690879661.2189357-CDS-C-linearis_contig103:96149..963931690879661.2189357-CDS-C-linearis_contig103:96149..96393Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 96150..96393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.820.1prot_C-linearis_contig103.820.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig103 95532..96393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig103.820.1

>prot_C-linearis_contig103.820.1 ID=prot_C-linearis_contig103.820.1|Name=mRNA_C-linearis_contig103.820.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=102bp
LADWIKGGGLNDSDVDTIASGMSPRSARSGRSPLAADGASNCARTYGRPE
ITAAAMAPALGAAAGTSSDRRQGPLPGPEPVAGGGGVAHGVETESNGRLV
DG
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mRNA from alignment at C-linearis_contig103:95532..96395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig103.820.1 ID=mRNA_C-linearis_contig103.820.1|Name=mRNA_C-linearis_contig103.820.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=864bp|location=Sequence derived from alignment at C-linearis_contig103:95532..96395+ (Chordaria linearis ClinC8C monoicous)
CTTGCGGATTGGATCAAGGGGGGCGGGTTGAACGACAGCGACGTGGACAC
CATCGCCAGCGGGTGAGATTTCTAGTTTTTTGCCATGTATGATGGACGTC
AGCCGTCTCAGCACGTCTAACCTGGGCAAAAAACAGCAGTGTTCTCAGGG
GGGTGTTGCATAGACACACCAACCTTTTCCTTGCTGCCCCCATGAAAATG
TTACTCTTGTACAAGCGTCAGCGGATATAGATTCTTCTAACCTGTGACCA
AGTCGGTTCAGGGAGACTGCTGTTGTAGGCACGCTAGCCCTTCCCTCGCC
GTCCCAGACTGCACGCACAAGATCTGCGATCCGTGTAATTCGTTGGTTGT
TGCATTCGTGTGATTGTTTGTGTTGTAGGGGTGATGGTTTACTTCACATT
GTCGGCTTGTTCTGAAAACGGCTGCCACGCTGCGTGAAACGCGAACGCGG
CAGACCCTTCTGGGTGATGGCACTTTCACGGCCGTCTTTCTCGGGTTTGC
ATCATCCCCGTTATTAAACAACAACTTTCTGCTGAACCCCCCCCCCCTGT
ATCGACTCCTACCCTTCCTCGTCCCCCCCGTGGTATTCGACGCTGCCACC
CACGCCTGCCGACCGTAGGATGTCGCCGAGGTCTGCGAGGTCCGGGAGGT
CCCCGCTAGCAGCCGACGGGGCCTCGAACTGCGCCAGGACGTATGGCCGC
CCCGAGATCACCGCGGCGGCTATGGCGCCGGCGTTGGGCGCGGCAGCGGG
AACGTCCTCGGACAGACGGCAAGGCCCTCTACCGGGGCCGGAGCCAGTGG
CTGGTGGTGGTGGGGTGGCGCATGGCGTGGAGACTGAGAGCAACGGCAGA
CTGGTAGATGGGGG
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Coding sequence (CDS) from alignment at C-linearis_contig103:95532..96395+

>mRNA_C-linearis_contig103.820.1 ID=mRNA_C-linearis_contig103.820.1|Name=mRNA_C-linearis_contig103.820.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at C-linearis_contig103:95532..96395+ (Chordaria linearis ClinC8C monoicous)
CTTGCGGATTGGATCAAGGGGGGCGGGTTGAACGACAGCGACGTGGACAC
CATCGCCAGCGGCTTGCGGATTGGATCAAGGGGGGCGGGTTGAACGACAG
CGACGTGGACACCATCGCCAGCGGGATGTCGCCGAGGTCTGCGAGGTCCG
GGAGGTCCCCGCTAGCAGCCGACGGGGCCTCGAACTGCGCCAGGACGTAT
GGCCGCCCCGAGATCACCGCGGCGGCTATGGCGCCGGCGTTGGGCGCGGC
AGCGGGAACGTCCTCGGACAGACGGCAAGGCCCTCTACCGGGGCCGGAGC
CAGTGGCTGGTGGTGGTGGGGTGGCGCATGGCGTGGAGACTGAGAGCAAC
GGCAGACTGGTAGATGGGGATGTCGCCGAGGTCTGCGAGGTCCGGGAGGT
CCCCGCTAGCAGCCGACGGGGCCTCGAACTGCGCCAGGACGTATGGCCGC
CCCGAGATCACCGCGGCGGCTATGGCGCCGGCGTTGGGCGCGGCAGCGGG
AACGTCCTCGGACAGACGGCAAGGCCCTCTACCGGGGCCGGAGCCAGTGG
CTGGTGGTGGTGGGGTGGCGCATGGCGTGGAGACTGAGAGCAACGGCAGA
CTGGTAGATGGG
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