mRNA_C-linearis_contig103.816.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig103.816.1
Unique NamemRNA_C-linearis_contig103.816.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig103.816.1 vs. uniprot
Match: A0A6H5KWP8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWP8_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.360e-6
Identity = 46/82 (56.10%), Postives = 52/82 (63.41%), Query Frame = 3 
Query:  381 SNK--SPPEEKNGPDALPGPSEVYATSVFGA-GGAKEQNAGEKSVPLVVGWGTGHLSGAAAPRGSRAPLLPSPPRPPPQPGG 617
            SNK  SPP+EK   + LPGP EVYATSVFG+ GGA E + G  + PLVVGWGTG L    AP     P  P+PPR    PGG
Sbjct:   35 SNKRASPPKEK---ERLPGPDEVYATSVFGSVGGAAEVDGGNAN-PLVVGWGTGDLP---APAEGELPS-PNPPRSLVSPGG 108
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWP8_9PHAE3.360e-656.10Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:67511..69428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size958
Cds size678
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.816.1prot_C-linearis_contig103.816.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig103 67643..69280 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927372.9328642-UTR-C-linearis_contig103:67510..676421622927372.9328642-UTR-C-linearis_contig103:67510..67642Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 67511..67642 -
1690879661.164858-UTR-C-linearis_contig103:67510..676421690879661.164858-UTR-C-linearis_contig103:67510..67642Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 67511..67642 -
1622927372.969724-UTR-C-linearis_contig103:69280..694281622927372.969724-UTR-C-linearis_contig103:69280..69428Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 69281..69428 -
1690879661.1928103-UTR-C-linearis_contig103:69280..694281690879661.1928103-UTR-C-linearis_contig103:69280..69428Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 69281..69428 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927372.9447618-CDS-C-linearis_contig103:67642..679491622927372.9447618-CDS-C-linearis_contig103:67642..67949Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 67643..67949 -
1690879661.177056-CDS-C-linearis_contig103:67642..679491690879661.177056-CDS-C-linearis_contig103:67642..67949Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 67643..67949 -
1622927372.9579685-CDS-C-linearis_contig103:68909..692801622927372.9579685-CDS-C-linearis_contig103:68909..69280Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 68910..69280 -
1690879661.1849241-CDS-C-linearis_contig103:68909..692801690879661.1849241-CDS-C-linearis_contig103:68909..69280Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 68910..69280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig103.816.1

>prot_C-linearis_contig103.816.1 ID=prot_C-linearis_contig103.816.1|Name=mRNA_C-linearis_contig103.816.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=226bp
MRRFTNFGKLGLLRFFTEVRARCVLQVLGTRKQFRAFTSPLYCCIYRRKT
PALEKENPQHTAYRFRLFWLVISPVREQQQVPARGKEWARRASRALGGVR
HERVRSGWGEGTKRGRKIGPVGRWLGDGTPIGRSSTQGQQSPSASFSPAP
PATARRPSASFSSISPREPRGSYRRPAGAPGDGWVAGTGGPAKETLLSAP
PRGSATAAAAAAPPADDEPLSPGGS*
back to top

mRNA from alignment at C-linearis_contig103:67511..69428-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig103.816.1 ID=mRNA_C-linearis_contig103.816.1|Name=mRNA_C-linearis_contig103.816.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1918bp|location=Sequence derived from alignment at C-linearis_contig103:67511..69428- (Chordaria linearis ClinC8C monoicous)
GACCAACTCAAACCAAGTCAATTCTGCTGTCCCCGCCTAATACTAAGTCC
TACCACTCAAAAGTCCTTTCTAAGCCCAGCAGAGCCTTATTGCACGACAT
CATACGGACTGTTTGCTCTGATAAGGGGGGGTCCTATGTACGTACTCTAT
GCGTAGATTCACAAATTTCGGAAAGCTGGGTCTCCTGCGTTTCTTCACTG
AAGTGCGGGCGCGTTGTGTGCTACAAGTATTAGGCACCAGAAAACAATTC
CGCGCGTTTACGTCGCCGCTCTACTGCTGTATTTATCGCCGTAAGACGCC
GGCCTTAGAGAAAGAAAACCCTCAGCACACTGCATACCGCTTTCGGCTTT
TCTGGTTGGTTATTTCCCCCGTCCGCGAGCAGCAACAAGTCCCCGCCCGA
GGAAAAGAATGGGCCCGACGCGCTTCCAGGGCCCTCGGAGGTGTACGCCA
CGAGCGTGTTCGGAGCGGGTGGGGCGAAGGAACAAAACGCGGGCGAAAAA
TCGGTCCCGTTGGTCGTTGGTGAGAGAGAGAGAGAGAAAGAGAGAGATGC
CGGGACGAGCGTGCTGTATTGGGTTGCCCTCCATACCTCGAGCTTTGGGG
CCGAATTCTACGCAGTGTGCCACCAACGAGTCGACTGCGACACATCATGT
CTTGGGTTATTTTGCTGTTTCGGTCTCTGCGTAATCCGGGAATTGTCCTC
GGACAAAGCGCACGTAGGTATGTAGGCGGCTGAAGTGTCAAGGTGTCAAG
GTCTGCTTGATCGTCTCGCGGGAAAATGTCACCCCATCCGTGTGTGTTCG
ATAACGACTCTTGTCTGACGCGTGGCTGTAGTAAAACGTGCTCAGCATTT
ATAGATTTTAAGTAGATACGGCAGGAGATTGTATTGCAGCATCAGAAAAT
ACCGTACGGCGGTTCGCGCTGCGATGGCCCTTCGCATTGGTGTGCCCTCT
GCTCTCTGCTGAACGTCTAGTGGCCTGTCTTGCAGGCAGTAGTCTACGCA
GGACAGTCAGCAAAGATATAGGATAAAGTATGGAGTTGGCGGAATGGGGG
GGGGGGTCGGGTGTTAGGGTTAGGGTTACGGAACCCCCCTCTCTATTTCT
AATATGCACTCCAGCAGCGGACCCTCTGTCATCGATACGGCATGCCGCCA
TCCTTTCATGATATGGGGTATTAAATCCTAGTTTATATACTCGAGGACCA
AATTTTGCACATCTTCGTCAACACGGAGCCCCTTTCCCACAAGCTGTAGC
ACGATTTGACGGCAAAACACGTCAGAACTTTTGCATCATCTTACATACAT
GCGCGTGAAAAAGAAACAAAGAGACGATTTGACGGCAAAACACGTCAGAA
CTTTTGCATCATCTTACATACATGCGCGTGAAAAAGAAACAAAGAGAGTG
GTTTCTTGTTGGAGCAAAAATAGTGTGTGGTAGCGGTTTTGTCTGATGAA
CATCTCGCCTTCCCTTCCCCCCTCCGCAGGTTGGGGGACGGGACACCTAT
CGGGCGCAGCAGCACCCAGGGGCAGCAGAGCCCCTCTGCTTCCTTCTCCC
CCGCGCCCCCCGCCACAGCCCGGCGGCCCTCTGCTTCCTTCTCCTCCATC
AGTCCCAGGGAACCCCGTGGATCATATCGCCGCCCCGCGGGGGCACCCGG
CGATGGGTGGGTGGCAGGGACAGGGGGCCCCGCCAAGGAGACCCTTCTTT
CAGCACCCCCCAGGGGCTCGGCCACCGCCGCCGCCGCCGCCGCCCCCCCA
GCAGATGATGAACCACTATCTCCCGGGGGATCCTAGAGGGGGTCATCCCC
CCCCTCCGCCCCACCTTTTCGTGCCCCCGCAGCAGCAGCAGCGGCAGCAG
CCGATGCCGATGCCACCGCGCAGCATGCTGCAGCAGCCGGTGTACCAGGG
AATGATGCAAGGAGGAGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig103:67511..69428-

>mRNA_C-linearis_contig103.816.1 ID=mRNA_C-linearis_contig103.816.1|Name=mRNA_C-linearis_contig103.816.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at C-linearis_contig103:67511..69428- (Chordaria linearis ClinC8C monoicous)
ATGCGTAGATTCACAAATTTCGGAAAGCTGGGTCTCCTGCGTTTCTTCAC
TGAAGTGCGGGCGCGTTGTGTGCTACAAGTATTAGGCACCAGAAAACAAT
TCCGCGCGTTTACGTCGCCGCTCTACTGCTGTATTTATCGCCGTAAGACG
CCGGCCTTAGAGAAAGAAAACCCTCAGCACACTGCATACCGCTTTCGGCT
TTTCTGGTTGGTTATTTCCCCCGTCCGCGAGCAGCAACAAGTCCCCGCCC
GAGGAAAAGAATGGGCCCGACGCGCTTCCAGGGCCCTCGGAGGTGTACGC
CACGAGCGTGTTCGGAGCGGGTGGGGCGAAGGAACAAAACGCGGGCGAAA
AATCGGTCCCGTTGGTCGTTGATGCGTAGATTCACAAATTTCGGAAAGCT
GGGTCTCCTGCGTTTCTTCACTGAAGTGCGGGCGCGTTGTGTGCTACAAG
TATTAGGCACCAGAAAACAATTCCGCGCGTTTACGTCGCCGCTCTACTGC
TGTATTTATCGCCGTAAGACGCCGGCCTTAGAGAAAGAAAACCCTCAGCA
CACTGCATACCGCTTTCGGCTTTTCTGGTTGGTTATTTCCCCCGTCCGCG
AGCAGCAACAAGTCCCCGCCCGAGGAAAAGAATGGGCCCGACGCGCTTCC
AGGGCCCTCGGAGGTGTACGCCACGAGCGTGTTCGGAGCGGGTGGGGCGA
AGGAACAAAACGCGGGCGAAAAATCGGTCCCGTTGGTCGTTGGTTGGGGG
ACGGGACACCTATCGGGCGCAGCAGCACCCAGGGGCAGCAGAGCCCCTCT
GCTTCCTTCTCCCCCGCGCCCCCCGCCACAGCCCGGCGGCCCTCTGCTTC
CTTCTCCTCCATCAGTCCCAGGGAACCCCGTGGATCATATCGCCGCCCCG
CGGGGGCACCCGGCGATGGGTGGGTGGCAGGGACAGGGGGCCCCGCCAAG
GAGACCCTTCTTTCAGCACCCCCCAGGGGCTCGGCCACCGCCGCCGCCGC
CGCCGCCCCCCCAGCAGATGATGAACCACTATCTCCCGGGGGATCCTAGG
TTGGGGGACGGGACACCTATCGGGCGCAGCAGCACCCAGGGGCAGCAGAG
CCCCTCTGCTTCCTTCTCCCCCGCGCCCCCCGCCACAGCCCGGCGGCCCT
CTGCTTCCTTCTCCTCCATCAGTCCCAGGGAACCCCGTGGATCATATCGC
CGCCCCGCGGGGGCACCCGGCGATGGGTGGGTGGCAGGGACAGGGGGCCC
CGCCAAGGAGACCCTTCTTTCAGCACCCCCCAGGGGCTCGGCCACCGCCG
CCGCCGCCGCCGCCCCCCCAGCAGATGATGAACCACTATCTCCCGGGGGA
TCCTAG
back to top