prot_C-linearis_contig102.808.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig102.808.1
Unique Nameprot_C-linearis_contig102.808.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length265
Homology
BLAST of mRNA_C-linearis_contig102.808.1 vs. uniprot
Match: D7FYM6_ECTSI (Thioredoxin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYM6_ECTSI)

HSP 1 Score: 414 bits (1063), Expect = 3.300e-144
Identity = 207/260 (79.62%), Postives = 234/260 (90.00%), Query Frame = 0
Query:    6 RQWARFVHLHYVVNAAMVLSYAVLRCCVSSPRLTTTETWTGFSQESEVLGLAAATLLSKYRKMATFDELFDRLFFIGKAAVAVLLFFVGIPHMVSYLIVWTACSLVVPYPGFLFSPEVTCLSPGEFQSMVRSP-APAPGQRVSWLVMFYADWCSASHNLKPMFGALARRYADKNRRFAVVDVLAHPEIAEDLNISTAGTSKQIPTLALFACGREICRLPTFASDGRVVRARMDERGVTKYFELDKEFRTTSYSRRG-RGK 263
            R+WARFVHLHYVVNAA+VL+Y ++R  +S+PRLT+  TWTGFSQE+E++GLA ATL+SKYRKMATFDE   R F IGKAAVAVLLFFVGIPHMV YLI+WTACSLVVPYP F+   EV+ L+PGEFQSMVRS  A APG+RV+WLVMF+ADWCS+SHNL+PMFGALARRYADKNRRFAVVD++AHPE AEDLNI+TAGTSKQ+PTLALFA GRE+CRLPTFASDG VVRARMDERGV  YFELD+EFRTTSYSRRG RGK
Sbjct:   10 RRWARFVHLHYVVNAALVLNYGIVRWYMSAPRLTSQATWTGFSQETEIIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWTACSLVVPYPRFVLPSEVSTLNPGEFQSMVRSSSAQAPGERVAWLVMFHADWCSSSHNLQPMFGALARRYADKNRRFAVVDIVAHPETAEDLNINTAGTSKQLPTLALFASGREVCRLPTFASDGSVVRARMDERGVINYFELDQEFRTTSYSRRGLRGK 269          
BLAST of mRNA_C-linearis_contig102.808.1 vs. uniprot
Match: A0A6H5JZG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG0_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 1.590e-45
Identity = 88/133 (66.17%), Postives = 98/133 (73.68%), Query Frame = 0
Query:   52 EVLGLAAATLLSKYRKMATFDELFDRLFFIGKAAVAVLLFFVGIPHMVSYLIVWTACSLVVPYPGFLFSPEVTCLSPGEFQSMVRSP-APAPGQRVSWLVMFYADWCSASHNLKPMFGALARRYADKNRRFAV 183
            EV+GLA ATL+SKYRKMATFDE   R F IGKAAVAVLLFFVGIPHMV YLI+WT               EV+ L+PGEFQSMVRS  A APG RV+WLVMF+ADWCS+S NL+PMFGALARR      RF +
Sbjct:    2 EVIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWT---------------EVSTLNPGEFQSMVRSSSAQAPGDRVAWLVMFHADWCSSSRNLQPMFGALARRCVRCGFRFMI 119          
BLAST of mRNA_C-linearis_contig102.808.1 vs. uniprot
Match: A0A6V1S3B1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S3B1_HETAK)

HSP 1 Score: 161 bits (407), Expect = 8.730e-45
Identity = 93/253 (36.76%), Postives = 144/253 (56.92%), Query Frame = 0
Query:   10 RFVHLHYVVNAAMVLSYAVLRCCVSSP-RLTTTETWTGFSQESEVLGLAAATLLSKYRKMATFDELFDRLFFIGKAAVAVLLFFVGIPHMVSYLIVWTACSLVVPYPGFLFSPEVTCLSPGEFQSMVRSPAPAPGQRVSWLVMFYADWCSASHNLKPMFGALARRYADKNR-----RFAVVDVLAHPEIAEDLNISTAGTSKQIPTLALFACGREICRLPTFASDGRVVRARMDERGVTKYFELDKEFRTTSY 256
            RF+H +Y+ N  ++L Y ++R     P  L  T T  GF++E E++ LA   L+ K+ + AT D+  D++F  GK A   LLF++  P    YL++    +L V  P  + +  +  +  G FQ +V++       R + LVMF+ DWC      +P+F  +A R+          RFA VD++  PE+A++  +  +GTSKQ+PT  LF  G E+ R+PTF SDG+VV+   D +G+ K+FELDK+F  TSY
Sbjct:    7 RFLHPYYLTNFLLLLIYPLVRFTYGIPDSLRDTRTMLGFTKEVEMILLAFVALIVKFARAATLDQYLDKVFLFGKMANGALLFYINRPFATGYLVI-AFVTLAVLNPPKILNLSIESMGMGTFQEVVKN---CRDPRRAALVMFHCDWCKDCTLTEPIFSRIADRFRGGGXXXGPYRFAKVDLVRFPELADEYAVDVSGTSKQLPTFILFYKGEEVKRMPTFKSDGQVVKTGFDVKGMMKWFELDKDFTQTSY 255          
BLAST of mRNA_C-linearis_contig102.808.1 vs. uniprot
Match: A0A1X6P1N4_PORUM (Thioredoxin domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P1N4_PORUM)

HSP 1 Score: 93.2 bits (230), Expect = 8.390e-19
Identity = 60/221 (27.15%), Postives = 106/221 (47.96%), Query Frame = 0
Query:    9 ARFVHLHYVVNAAMVLSYAVLRCCVSSPRLTTTETWTGFSQESEVLGLAAATLLSKYRKMATFDELFDRLFFIGKAAVAVLLFFVGIPHMVSYLIVWTACSLVVPYPGFLFSPEVTCLSPGEFQSMVRSPAPAPGQRVSWLVMFYADWCSASHNLKPMFGALARRYADKNRRFAVVDVLAHPEIAEDLNISTAGTSKQIPTLALFACGREICRLPTFASDG 229
            +RF+  +Y++NA ++ ++ + R       L T +   GF++ES++   A    +++     T D     +    + A+ V+LFF+       ++I++T   LV P P       V+ L+   F   V         +   +V  +A W      L P+   L   Y     R+A +D     ++A DL++STA TS+Q+PT+ +F+ G+E+ RLPT   DG
Sbjct:   12 SRFLSPYYLLNAILIGAFVLFRIRDPPAELATVDPM-GFTKESQIYFCAGLMYVTRALSAPTLDVYLSSVLLFTRVAIIVVLFFMSPALAAVFVILFTFVGLVFPQPRATTPAAVSVLNRVSFAERVTRNK----HKTITVVWLHAPWSPRCTGLAPLLNRLVAAYDHPRLRWAKLDASVWTDVAADLDVSTAATSQQLPTVVVFSQGKELARLPTLGRDG 227          
BLAST of mRNA_C-linearis_contig102.808.1 vs. uniprot
Match: A0A3A9JV88_9PROT (Thioredoxin TrxC n=2 Tax=Acetobacteraceae TaxID=433 RepID=A0A3A9JV88_9PROT)

HSP 1 Score: 52.0 bits (123), Expect = 8.060e-5
Identity = 31/84 (36.90%), Postives = 42/84 (50.00%), Query Frame = 0
Query:  149 LVMFYADWCSASHNLKPMFGALARRYADKNRRFAVVDVLAHPEIAEDLNISTAGTSKQIPTLALFACGREICRLPTFASDGRVV 232
            LV F+A WC   H + P F A A+   +   R   V     P +A++L I      + IPTLA+FA GRE+ R       GR+V
Sbjct:   61 LVDFWASWCGPCHAMAPQFEAAAQAL-EPRMRLVKVSTEEAPRLAQELGI------RSIPTLAIFAGGREVARQAGAMPAGRIV 137          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.808.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FYM6_ECTSI3.300e-14479.62Thioredoxin-like protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JZG0_9PHAE1.590e-4566.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1S3B1_HETAK8.730e-4536.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1X6P1N4_PORUM8.390e-1927.15Thioredoxin domain-containing protein n=1 Tax=Porp... [more]
A0A3A9JV88_9PROT8.060e-536.90Thioredoxin TrxC n=2 Tax=Acetobacteraceae TaxID=43... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.30.10coord: 129..251
e-value: 7.0E-21
score: 76.5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 120..264
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 99..119
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 30..73
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 94..98
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 74..93
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableTMHMMTMhelixcoord: 85..107
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 125..218
e-value: 7.1E-10
score: 38.8
IPR013766Thioredoxin domainPROSITEPS51352THIOREDOXIN_2coord: 126..256
score: 9.993
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 121..225

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig102contigC-linearis_contig102:556614..560436 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig102.808.1mRNA_C-linearis_contig102.808.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig102 556295..560491 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig102.808.1 ID=prot_C-linearis_contig102.808.1|Name=mRNA_C-linearis_contig102.808.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=265bp
MAAPPRQWARFVHLHYVVNAAMVLSYAVLRCCVSSPRLTTTETWTGFSQE
SEVLGLAAATLLSKYRKMATFDELFDRLFFIGKAAVAVLLFFVGIPHMVS
YLIVWTACSLVVPYPGFLFSPEVTCLSPGEFQSMVRSPAPAPGQRVSWLV
MFYADWCSASHNLKPMFGALARRYADKNRRFAVVDVLAHPEIAEDLNIST
AGTSKQIPTLALFACGREICRLPTFASDGRVVRARMDERGVTKYFELDKE
FRTTSYSRRGRGKN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013766Thioredoxin_domain
IPR036249Thioredoxin-like_sf