mRNA_C-linearis_contig102.808.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig102.808.1 vs. uniprot
Match: D7FYM6_ECTSI (Thioredoxin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYM6_ECTSI) HSP 1 Score: 414 bits (1065), Expect = 1.860e-142 Identity = 207/260 (79.62%), Postives = 234/260 (90.00%), Query Frame = 2 Query: 71 RQWARFVHLHYVVNAAMVLSYAVLRCCVSSPRLTTTETWTGFSQESEVLGLAAATLLSKYRKMATFDELFDRLFFIGKAAVAVLLFFVGIPHMVSYLIVWTACSLVVPYPGFLFSPEVTCLSPGEFQSMVRSP-APAPGQRVSWLVMFYADWCSASHNLKPMFGALARRYADKNRRFAVVDVLAHPEIAEDLNISTAGTSKQIPTLALFACGREICRLPTFASDGRVVRARMDERGVTKYFELDKEFRTTSYSRRG-RGK 844
R+WARFVHLHYVVNAA+VL+Y ++R +S+PRLT+ TWTGFSQE+E++GLA ATL+SKYRKMATFDE R F IGKAAVAVLLFFVGIPHMV YLI+WTACSLVVPYP F+ EV+ L+PGEFQSMVRS A APG+RV+WLVMF+ADWCS+SHNL+PMFGALARRYADKNRRFAVVD++AHPE AEDLNI+TAGTSKQ+PTLALFA GRE+CRLPTFASDG VVRARMDERGV YFELD+EFRTTSYSRRG RGK
Sbjct: 10 RRWARFVHLHYVVNAALVLNYGIVRWYMSAPRLTSQATWTGFSQETEIIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWTACSLVVPYPRFVLPSEVSTLNPGEFQSMVRSSSAQAPGERVAWLVMFHADWCSSSHNLQPMFGALARRYADKNRRFAVVDIVAHPETAEDLNINTAGTSKQLPTLALFASGREVCRLPTFASDGSVVRARMDERGVINYFELDQEFRTTSYSRRGLRGK 269
BLAST of mRNA_C-linearis_contig102.808.1 vs. uniprot
Match: A0A6H5JZG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG0_9PHAE) HSP 1 Score: 159 bits (403), Expect = 4.840e-44 Identity = 88/133 (66.17%), Postives = 98/133 (73.68%), Query Frame = 2 Query: 209 EVLGLAAATLLSKYRKMATFDELFDRLFFIGKAAVAVLLFFVGIPHMVSYLIVWTACSLVVPYPGFLFSPEVTCLSPGEFQSMVRSP-APAPGQRVSWLVMFYADWCSASHNLKPMFGALARRYADKNRRFAV 604
EV+GLA ATL+SKYRKMATFDE R F IGKAAVAVLLFFVGIPHMV YLI+WT EV+ L+PGEFQSMVRS A APG RV+WLVMF+ADWCS+S NL+PMFGALARR RF +
Sbjct: 2 EVIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWT---------------EVSTLNPGEFQSMVRSSSAQAPGDRVAWLVMFHADWCSSSRNLQPMFGALARRCVRCGFRFMI 119
BLAST of mRNA_C-linearis_contig102.808.1 vs. uniprot
Match: A0A6V1S3B1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S3B1_HETAK) HSP 1 Score: 162 bits (409), Expect = 1.380e-43 Identity = 93/253 (36.76%), Postives = 144/253 (56.92%), Query Frame = 2 Query: 83 RFVHLHYVVNAAMVLSYAVLRCCVSSP-RLTTTETWTGFSQESEVLGLAAATLLSKYRKMATFDELFDRLFFIGKAAVAVLLFFVGIPHMVSYLIVWTACSLVVPYPGFLFSPEVTCLSPGEFQSMVRSPAPAPGQRVSWLVMFYADWCSASHNLKPMFGALARRYADKNR-----RFAVVDVLAHPEIAEDLNISTAGTSKQIPTLALFACGREICRLPTFASDGRVVRARMDERGVTKYFELDKEFRTTSY 823
RF+H +Y+ N ++L Y ++R P L T T GF++E E++ LA L+ K+ + AT D+ D++F GK A LLF++ P YL++ +L V P + + + + G FQ +V++ R + LVMF+ DWC +P+F +A R+ RFA VD++ PE+A++ + +GTSKQ+PT LF G E+ R+PTF SDG+VV+ D +G+ K+FELDK+F TSY
Sbjct: 7 RFLHPYYLTNFLLLLIYPLVRFTYGIPDSLRDTRTMLGFTKEVEMILLAFVALIVKFARAATLDQYLDKVFLFGKMANGALLFYINRPFATGYLVI-AFVTLAVLNPPKILNLSIESMGMGTFQEVVKN---CRDPRRAALVMFHCDWCKDCTLTEPIFSRIADRFRGGGXXXGPYRFAKVDLVRFPELADEYAVDVSGTSKQLPTFILFYKGEEVKRMPTFKSDGQVVKTGFDVKGMMKWFELDKDFTQTSY 255
BLAST of mRNA_C-linearis_contig102.808.1 vs. uniprot
Match: A0A1X6P1N4_PORUM (Thioredoxin domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P1N4_PORUM) HSP 1 Score: 93.2 bits (230), Expect = 6.180e-18 Identity = 60/221 (27.15%), Postives = 106/221 (47.96%), Query Frame = 2 Query: 80 ARFVHLHYVVNAAMVLSYAVLRCCVSSPRLTTTETWTGFSQESEVLGLAAATLLSKYRKMATFDELFDRLFFIGKAAVAVLLFFVGIPHMVSYLIVWTACSLVVPYPGFLFSPEVTCLSPGEFQSMVRSPAPAPGQRVSWLVMFYADWCSASHNLKPMFGALARRYADKNRRFAVVDVLAHPEIAEDLNISTAGTSKQIPTLALFACGREICRLPTFASDG 742
+RF+ +Y++NA ++ ++ + R L T + GF++ES++ A +++ T D + + A+ V+LFF+ ++I++T LV P P V+ L+ F V + +V +A W L P+ L Y R+A +D ++A DL++STA TS+Q+PT+ +F+ G+E+ RLPT DG
Sbjct: 12 SRFLSPYYLLNAILIGAFVLFRIRDPPAELATVDPM-GFTKESQIYFCAGLMYVTRALSAPTLDVYLSSVLLFTRVAIIVVLFFMSPALAAVFVILFTFVGLVFPQPRATTPAAVSVLNRVSFAERVTRNK----HKTITVVWLHAPWSPRCTGLAPLLNRLVAAYDHPRLRWAKLDASVWTDVAADLDVSTAATSQQLPTVVVFSQGKELARLPTLGRDG 227 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.808.1 >prot_C-linearis_contig102.808.1 ID=prot_C-linearis_contig102.808.1|Name=mRNA_C-linearis_contig102.808.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=265bp MAAPPRQWARFVHLHYVVNAAMVLSYAVLRCCVSSPRLTTTETWTGFSQEback to top mRNA from alignment at C-linearis_contig102:556295..560491- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.808.1 ID=mRNA_C-linearis_contig102.808.1|Name=mRNA_C-linearis_contig102.808.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4197bp|location=Sequence derived from alignment at C-linearis_contig102:556295..560491- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:556295..560491- >mRNA_C-linearis_contig102.808.1 ID=mRNA_C-linearis_contig102.808.1|Name=mRNA_C-linearis_contig102.808.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at C-linearis_contig102:556295..560491- (Chordaria linearis ClinC8C monoicous)back to top |