mRNA_C-linearis_contig102.807.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig102.807.1
Unique NamemRNA_C-linearis_contig102.807.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 6.310e-61
Identity = 100/122 (81.97%), Postives = 110/122 (90.16%), Query Frame = 1
Query:    1 VSSLNKKATVPHRREVLSRVRAVKRGLESEVALMLDDEFVAITTDGWTSRSNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHDLTGRVTACVTDCEPSMVKAGRL 366
            VS+LNK+A VP RRE+LSR+RAVK  LESEVALMLD EFVAITTDGWTSR+NESY SLTVAYID EW LHH+ L+CAKHTGTTTGEDLA  +AGM+ERHDLTGRV ACVTDCEPSM+KAGRL
Sbjct:    2 VSALNKRAKVPSRRELLSRMRAVKTALESEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRL 123          
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 1.230e-55
Identity = 93/122 (76.23%), Postives = 102/122 (83.61%), Query Frame = 1
Query:    1 VSSLNKKATVPHRREVLSRVRAVKRGLESEVALMLDDEFVAITTDGWTSRSNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHDLTGRVTACVTDCEPSMVKAGRL 366
            VS LNKKA  P RR ++ ++R +K+ LESEVALMLDDE+VAITTDGWTSRSNESY SLTVAYID  W LHH+ L C KHTG+T GEDLA EI  MIERH LTGRVTACVTDCEPSMVKAGRL
Sbjct:   38 VSGLNKKARAPIRRALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRL 159          
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.740e-32
Identity = 64/122 (52.46%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    1 VSSLNKKATVPHRREVLSRVRAVKRGLESEVALMLDDEFVAITTDGWTSRSNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHDLTGRVTACVTDCEPSMVKAGRL 366
            V  L  +ATVPH+R  L ++R +K+GL+ EV   L  E VA+T+DGWTS SN++Y   T  YI S ++L  + +EC KH G TTGEDL   +  MI R+ LT R  A  TDCEPSMVKAGRL
Sbjct:   11 VRFLKSRATVPHKRLFLEKLRGMKKGLDQEVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRL 132          
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.650e-27
Identity = 55/122 (45.08%), Postives = 82/122 (67.21%), Query Frame = 1
Query:    1 VSSLNKKATVPHRREVLSRVRAVKRGLESEVALMLDDEFVAITTDGWTSRSNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHDLTGRVTACVTDCEPSMVKAGRL 366
            V ++   A VP +++ ++ +R VK+ +  +V+ +++ E V IT+DGWTS +N++Y SLT   I S W L  + ++C+K  GTTTG+ LA  I   + +H LTG+VTA  TDCEPSMVK GRL
Sbjct:    2 VHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRL 123          
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.910e-20
Identity = 47/85 (55.29%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  112 EFVAITTDGWTSRSNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHDLTGRVTACVTDCEPSMVKAGRL 366
            E VA+T+DGWT  SN++Y S T  YI S ++L  + LEC KH   T GEDL   +  MI R+ LTGR  A  TDCE SMVKAGRL
Sbjct:    4 EHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRL 88          
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.360e-15
Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 1
Query:  145 SRSNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHDLTGRVTACVTDCEPSMVKAGRL 366
            S SN++Y + T  YI S ++L  + LE  KH G TTGEDL   +  MI R+ LTGR  A  TDCEP MVKAGRL
Sbjct:    3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRL 76          
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Match: A0A6J1Q6G9_9HYME (zinc finger BED domain-containing protein 1-like n=1 Tax=Temnothorax curvispinosus TaxID=300111 RepID=A0A6J1Q6G9_9HYME)

HSP 1 Score: 73.6 bits (179), Expect = 8.820e-13
Identity = 41/113 (36.28%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   28 VPHRREVLSRVRAVKRGLESEVALMLDD-EFVAITTDGWTSRSNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHDLTGRVTACVTDCEPSMVKAGR 363
            VP RR + +R+R +      +V   LD  + VAITTD WTS++N+SY +L+  Y+D  W  H + L   + T + T E L   I  +++  +LT +VT  V D   ++VKA +
Sbjct:  101 VPSRRTIDNRMRTLYNEAAEQVRTTLDKVDAVAITTDAWTSKANDSYITLSAHYLDDNWIPHTVNLMTREMTESHTAEHLQKTIREVVQEWNLTNKVTGLVHDNASNIVKAAK 213          
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Match: A0A6G0XUK0_APHCR (Zinc finger BED domain-containing protein 6-like (Fragment) n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0XUK0_APHCR)

HSP 1 Score: 68.6 bits (166), Expect = 4.670e-11
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 1
Query:  112 EFVAITTDGWTSRSNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHDLTGRVTACVTD 333
            E   +TTD WTSR+NES+ ++T+ +ID+E+ L  I LEC+      TG +LA EI  ++E  +LT ++T  V+D
Sbjct:  204 ESACLTTDCWTSRNNESFMAITIHFIDTEFELKSILLECSSFNLNHTGHNLAQEIERILESWELTKKITFAVSD 277          
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Match: UPI00100E6752 (zinc finger BED domain-containing protein 4-like n=1 Tax=Aphis gossypii TaxID=80765 RepID=UPI00100E6752)

HSP 1 Score: 66.6 bits (161), Expect = 1.910e-10
Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  112 EFVAITTDGWTSRSNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHDLTGRVTACVTDCEPSMVKAGRL 366
            +++A+TTD WTS  NESY+++TV +ID   +L    L CAK +   T +++ +++  +I +  L  +V AC TD   ++  A RL
Sbjct:   61 QYIALTTDAWTSIRNESYTAITVHFIDQNCHLKSYLLSCAKFSVRHTSQNIKDDLQNVIRQWGLQNKVAACTTDNAANITAAIRL 145          
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Match: UPI001FBAC49D (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Pieris napi TaxID=78633 RepID=UPI001FBAC49D)

HSP 1 Score: 65.9 bits (159), Expect = 4.460e-10
Identity = 37/113 (32.74%), Postives = 63/113 (55.75%), Query Frame = 1
Query:    1 VSSLNKKATVPHRREVLSRVRAVKRGLESE-VALMLDD-EFVAITTDGWTSRSNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHDLTGRVTACVTD 333
            +  LN   T+P R+ + + +      +E + V   L+  +F+++TTDGWTS+ NE Y SLT  +++ +  L    LEC +++     E+L NEI  M E  ++T ++ A  TD
Sbjct:  178 IHGLNPNYTIPCRKTLSNALLVNYYNIEKQKVQKCLEGTDFISLTTDGWTSKPNEHYISLTAHFLNDKTELESKVLECYQYSDRQFAENLKNEIMRMCEDWNITNKIVAVTTD 290          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCS5_ECTSI6.310e-6181.97Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KUY5_9PHAE1.230e-5576.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJV8_9PHAE1.740e-3252.46Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L7Y8_9PHAE4.650e-2745.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHP9_9PHAE1.910e-2055.29Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KVI1_9PHAE3.360e-1554.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6J1Q6G9_9HYME8.820e-1336.28zinc finger BED domain-containing protein 1-like n... [more]
A0A6G0XUK0_APHCR4.670e-1143.24Zinc finger BED domain-containing protein 6-like (... [more]
UPI00100E67521.910e-1036.47zinc finger BED domain-containing protein 4-like n... [more]
UPI001FBAC49D4.460e-1032.74E3 SUMO-protein ligase ZBED1-like n=1 Tax=Pieris n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig102contigC-linearis_contig102:545618..545985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score205.7
Seed ortholog evalue1.2e-50
Seed eggNOG ortholog2880.D8LCS5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size368
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927372.6398363-CDS-C-linearis_contig102:545617..5459831622927372.6398363-CDS-C-linearis_contig102:545617..545983Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 545618..545983 +
1690879660.9698887-CDS-C-linearis_contig102:545617..5459831690879660.9698887-CDS-C-linearis_contig102:545617..545983Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 545618..545983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig102.807.1prot_C-linearis_contig102.807.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig102 545618..545983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig102.807.1

>prot_C-linearis_contig102.807.1 ID=prot_C-linearis_contig102.807.1|Name=mRNA_C-linearis_contig102.807.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=122bp
VSSLNKKATVPHRREVLSRVRAVKRGLESEVALMLDDEFVAITTDGWTSR
SNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHD
LTGRVTACVTDCEPSMVKAGRL
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mRNA from alignment at C-linearis_contig102:545618..545985+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig102.807.1 ID=mRNA_C-linearis_contig102.807.1|Name=mRNA_C-linearis_contig102.807.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=368bp|location=Sequence derived from alignment at C-linearis_contig102:545618..545985+ (Chordaria linearis ClinC8C monoicous)
GTCTCGAGTCTCAACAAAAAAGCCACGGTTCCCCACCGCCGCGAGGTTCT TTCAAGGGTGCGCGCTGTCAAAAGGGGGCTCGAAAGCGAGGTCGCCCTCA TGCTGGACGACGAGTTCGTAGCGATCACCACGGATGGCTGGACATCTCGA AGCAACGAGTCGTACTCGTCGCTGACCGTGGCCTACATCGACTCCGAGTG GAACCTGCACCATATTTATCTGGAATGCGCGAAACACACGGGGACCACCA CGGGGGAGGACTTGGCGAACGAGATAGCGGGGATGATCGAACGCCACGAC CTAACCGGTCGGGTGACTGCATGCGTCACCGATTGCGAGCCGTCTATGGT CAAGGCGGGTCGCCTGCT
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Coding sequence (CDS) from alignment at C-linearis_contig102:545618..545985+

>mRNA_C-linearis_contig102.807.1 ID=mRNA_C-linearis_contig102.807.1|Name=mRNA_C-linearis_contig102.807.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at C-linearis_contig102:545618..545985+ (Chordaria linearis ClinC8C monoicous)
GTCTCGAGTCTCAACAAAAAAGCCACGGTTCCCCACCGCCGCGAGGTTCT
TTCAAGGGTGCGCGCTGTCAAAAGGGGGCTCGAAAGCGAGGTCGCCCTCA
TGCTGGACGACGAGTTCGTAGCGATCACCACGGATGGCTGGACATCTCGA
AGCAACGAGTCGTACTCGTCGCTGACCGTGGCCTACATCGACTCCGAGTG
GAACCTGCACCATATTTATCTGGAATGCGCGAAACACACGGGGACCACCA
CGGGGGAGGACTTGGCGAACGAGATAGCGGGGATGATCGAACGCCACGAC
CTAACCGGTCGGGTGACTGCATGCGTCACCGATTGCGAGCCGTCTATGGT
CAAGGCGGGTCGCCTGGTCTCGAGTCTCAACAAAAAAGCCACGGTTCCCC
ACCGCCGCGAGGTTCTTTCAAGGGTGCGCGCTGTCAAAAGGGGGCTCGAA
AGCGAGGTCGCCCTCATGCTGGACGACGAGTTCGTAGCGATCACCACGGA
TGGCTGGACATCTCGAAGCAACGAGTCGTACTCGTCGCTGACCGTGGCCT
ACATCGACTCCGAGTGGAACCTGCACCATATTTATCTGGAATGCGCGAAA
CACACGGGGACCACCACGGGGGAGGACTTGGCGAACGAGATAGCGGGGAT
GATCGAACGCCACGACCTAACCGGTCGGGTGACTGCATGCGTCACCGATT
GCGAGCCGTCTATGGTCAAGGCGGGTCGCCTG
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