prot_C-linearis_contig102.804.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig102.804.1
Unique Nameprot_C-linearis_contig102.804.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length752
Homology
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BLAST of mRNA_C-linearis_contig102.804.1 vs. uniprot
Match: D7FYM3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM3_ECTSI)

HSP 1 Score: 538 bits (1386), Expect = 1.360e-180
Identity = 315/482 (65.35%), Postives = 358/482 (74.27%), Query Frame = 0 
Query:   23 KIALAPFVQGEPSVHLLDQDGKASAARDRSPEDDFQMAAQSLGVGPTDESVPEGEGTGGDNQTRDPSAHAGDEKAEG----DGATGSGATKEAASPPEHPLQKAITSFDMALGELNQLVHLVDLGRAGEFMVLKRVTPTEEDQATAMPDQSARPGDGVPREALPTMVNVKRSQLKGAAEQLRKRAKRLRETSKVQKIFQQGVMHLRKSWRIIAPNHGKVNVPLQVGEALCVDCSFGSAGGRPVPNTAAAGSRHRHPWLFQLTCSEGGQLKAQPSSRQHLKALEVQLVSVVTGACEHSLRASFPACSDGGDNAVAGAVAGEERRAEPPSVSNGGGTPEAGGLGDFQIQMDELEVHISRQQHSVFWEEVFETLKAEALVDGRDGWLVRQDARCGDDVGANRT----VVPDVVARMDAGAGAKRRLVSLSPRGTSIPGRTAGARVVHVLDDEVMVEMNSHFQLGYRLVS---GKCSSGARAEASC 493
            KIAL PFV  +P VH  D DG AS AR+RS +DDFQ+A Q        E   +G+  G     RD  A  G++  E     + A GSG T E+AS  EHPLQ A+TSFDMALGELNQLVHLVDL RAGEFM L+RVTP++EDQA AM DQSARPGDGVP EALP++V +KRSQLKGAAEQLR+RAKRLRET+KVQ +FQQGV+HLRKSWRI+APNHGKVNVPLQVGE L VDCSFGSAGG+ VP TAAAG+RHRHPWLFQLTC EGG+L+AQPS+ Q LKA EVQLVSV TG CEHSLRASFPA SD      A   AG+ R+  PP  SNGG   +     D  ++MD+LE HISR QHSVFWEEVFETLKAEALVDG+DGWLV QDARCG DV   RT    + P+VV R+++GA  KRRLV LSPRG +     A ARV HVLDDEVMVEM+SH  LGYRLVS   G C  G + + SC
Sbjct:   55 KIALVPFV-ADP-VHQYDGDGNASCARERSVQDDFQLAVQQTLADHAKEVEDQGDSHG---HPRDTGAGEGNDDLENGAKKEEAIGSGGTHESASLAEHPLQSAVTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARAMSDQSARPGDGVPPEALPSLVTMKRSQLKGAAEQLRERAKRLRETTKVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPSNTQGLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRTDA--AAGDCRK--PPPASNGGAELKLERRSD--VRMDDLEQHISRLQHSVFWEEVFETLKAEALVDGKDGWLVHQDARCGSDVVGPRTGTPAMAPEVVGRIESGA--KRRLVGLSPRGMTTSTLNARARVAHVLDDEVMVEMDSHSLLGYRLVSANPGGCREGCQFKKSC 523
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.804.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYM3_ECTSI1.360e-18065.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 189..209
IPR019313Mediator complex, subunit Med17PANTHERPTHR13114TRANSCRIPTIONAL CO-ACTIVATOR CRSP77-RELATEDcoord: 88..512

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig102contigC-linearis_contig102:525328..528691 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig102.804.1mRNA_C-linearis_contig102.804.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig102 525247..528874 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig102.804.1 ID=prot_C-linearis_contig102.804.1|Name=mRNA_C-linearis_contig102.804.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=752bp
MEGLEGNAHTDSRVVKEMGPSTKIALAPFVQGEPSVHLLDQDGKASAARD
RSPEDDFQMAAQSLGVGPTDESVPEGEGTGGDNQTRDPSAHAGDEKAEGD
GATGSGATKEAASPPEHPLQKAITSFDMALGELNQLVHLVDLGRAGEFMV
LKRVTPTEEDQATAMPDQSARPGDGVPREALPTMVNVKRSQLKGAAEQLR
KRAKRLRETSKVQKIFQQGVMHLRKSWRIIAPNHGKVNVPLQVGEALCVD
CSFGSAGGRPVPNTAAAGSRHRHPWLFQLTCSEGGQLKAQPSSRQHLKAL
EVQLVSVVTGACEHSLRASFPACSDGGDNAVAGAVAGEERRAEPPSVSNG
GGTPEAGGLGDFQIQMDELEVHISRQQHSVFWEEVFETLKAEALVDGRDG
WLVRQDARCGDDVGANRTVVPDVVARMDAGAGAKRRLVSLSPRGTSIPGR
TAGARVVHVLDDEVMVEMNSHFQLGYRLVSGKCSSGARAEASCTAEKDRS
EASERTQAASLCQLALLYCGSLIRQQQRAQVVARRGSGSNSGVGREVGAR
IPAGAAGGKVGNGAAGGHLSAASTWKAVRRVLLHHLFRSEVVQGLADVSR
TLRKIGLPLAVRWTHLEETCPSSTLSFTFGHCFHFRASLGDGFGVVVSAL
PGLQNHADQRSVELESALDLEHFLLGEVCRQIVLTFGDVTAAWTSGIQRE
RIICFRVDLVPAAIHLLPVSKSKVSRNNAPEEADGGSCEVRVFVEEVGDD
R*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019313Mediator_Med17