mRNA_C-linearis_contig102.795.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig102.795.1 vs. uniprot
Match: D7FYM2_ECTSI (FkbM family methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYM2_ECTSI) HSP 1 Score: 709 bits (1831), Expect = 1.950e-239 Identity = 509/956 (53.24%), Postives = 601/956 (62.87%), Query Frame = 1
Query: 85 DDASTVSFGSELHRPMKYQHEPPSPRQD-------PATPVAWSRSTGNRTHSNIIDKSFS----RE-ADVTARIYSSSSSPG-DSSVEEVATRRHQQELHQRATRR---HHRRSDRDRQRMRPTHADD-KMAATVALLKCELQATRSQVEQKEVVTRSLQRQLDQRGEIEEQIQARAEEDLVAALAKASGLKEELARTSQLLVEGALARQHLEQRCSALTQNLHESVTRTAELGEEVSVSRAELVRISGALHARRGTDVVDAERAFGEELQRVQENATREARGLRQXXXXXXXXXXXXXXXXXXSCGERESWREXXXXXXXXXXXLRETVHALRQYSENDTIDRLLGQARAKPAIGTLFFGRCFSLVSRWKHRAEEQEGLQRVASSPEGFAFGSSNSETEASHCTESVEPSVSPRASG-LPFAALDLATTPTRKQREERHEVEEAGHEAATNSLRQELSEVKKTLAVMEEELTTAVLAAREQGVERAAAESCVKSLQREAEANARAAREDVAARRAAKVRDMAKLKNAIRQDMVEELFRLQREVREQRQEEKPQ--TTDGAAPCKCQTECSRRPLGEDKACQTDD---AIAPSAEEGGLVVHEDNLSRACASCXXXXXXXXXXXXDVANHASPRAATTALEEEAEKRIAAALASAAVAQVGATAWASAFSAATQLFHAALASLCDEAT---GRSGEDDGRHAFGVPLLTGTEASGSNKASTSAVVPWVPGEAKTDAATALQALRDSVQSAVEGIRLTAGRAAQETMPPASNVT--TTGSQTVAEPPAAVVPVVSRN---------------TIGSQTDEKPKRKVLWARRHGAGVQAGGRPSRWNAETFSGGGG---APAWEGDIVRRCLEGERVDGDGEPRIKQPD-TRVEELERTAGAL----QRAEAEKEGLEQILTRRFEHEKATLLKQQRDIFEEDIGELYTSMMAMVHDF 2799
+DAS VSFGSE P K+ + P SPR D P PV WSR + ++D + RE ADVT RIYSSSSS + S E VA RHQ + H R T H RR+DR + A+TVALL EL RSQ+EQK+VV RSLQRQLDQRGE+E Q QARAEEDLVAALAKASGLKEEL RTSQLLV+GALARQHLEQRCS LT+ L ++ TRT EL EV+VSRAE+VRISGALHARR TDVVDAERAFGEELQRVQE+A RE R L Q +CGER+SWRE LRETV ALRQYSENDTID+LLGQ VSRWK RAEE E LQRVASSPE AF S+SETE S CTESVEP SP G P AA + TT ++++EE +V GHEA +SLRQELSE KK+L + EE+ AVL AR+Q RAAAESCV+ LQR+AEANARAARE V ARRAAK RDMA LK AI+QDMV+EL +LQ EVR+QRQEE+ TTD +C E SR P+G DKACQ+D+ +IA S+ E G+VV + L++ A+C D ++ + T LE+EAE+R++AALASAAVAQVGATAWASAFSAA +LFH AL SLC++A G + +GR A + L G + N+AS SA+VPW P EA+ DAA A++ LRD V+S++E R T P + +T T GSQT AEPP VSR T GSQTDE ++ +RH GVQAG W ET G GG APAWEG + RC EGE+ DGD R K D R+EELE AGAL QRAE EK LE+ LTRRF+ EKA LK+QRD +E DIG L+ S MA++ DF
Sbjct: 32 NDASLVSFGSEEPTPTKHHYVPRSPRDDAYSNTARPWRPVGWSRVVDTSVPTAVVDNPEAGLGGREVADVTTRIYSSSSSCATERSTERVA--RHQGKRHHRHTDSAADHERRTDRXXXXXXXXXXXXXETASTVALLTNELVIVRSQIEQKDVVVRSLQRQLDQRGELEAQTQARAEEDLVAALAKASGLKEELTRTSQLLVDGALARQHLEQRCSVLTEELQKTATRTTELENEVAVSRAEVVRISGALHARRSTDVVDAERAFGEELQRVQESAARETRTLGQEASGLRTLLEQTKSKLRNACGERDSWREEADSFSSEAATLRETVQALRQYSENDTIDQLLGQ------------------VSRWKRRAEELENLQRVASSPERSAFDGSSSETEPSRCTESVEPLPSPTMEGGPPLAAEAIPTTVFQEEKEEHEKVLGDGHEAEIHSLRQELSEAKKSLVMKGEEVAAAVLEARQQAAMRAAAESCVEGLQRKAEANARAAREHVVARRAAKARDMANLKIAIQQDMVDELHKLQCEVRKQRQEEQQLHGTTDTGL-SECSGERSREPVGLDKACQSDNTIASIASSSTEEGVVVESNILNKVGAACPACGVDLADSGADGSSIVASPKVTVVLEDEAERRVSAALASAAVAQVGATAWASAFSAARRLFHTALVSLCEQADCLFGADAKGNGRQALVLSPLVGLTTALRNEAS-SAMVPWAPSEAEADAAAAMEVLRDDVESSMERFRSALADHLVRTAPLSLTLTMATVGSQTTAEPPTDSTTAVSRTXXXXXXXXXXXLPRATSGSQTDEVGIVELKVDQRHNVGVQAGNLGG-WRTETAPGAGGRGGAPAWEGGMDSRCSEGEKYDGDRSWRPKSEDHARMEELELKAGALSAALQRAEKEKSNLERSLTRRFKREKAMQLKKQRDKYEADIGALHVSTMALLQDF 964
BLAST of mRNA_C-linearis_contig102.795.1 vs. uniprot
Match: A0A6H5JZ16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ16_9PHAE) HSP 1 Score: 349 bits (896), Expect = 4.230e-108 Identity = 234/384 (60.94%), Postives = 261/384 (67.97%), Query Frame = 1
Query: 1 MEALSRKTEKEKLLELEEMLADATTL--TADDASTVSFGSELHRPMKYQHEPPSPRQDPAT-------PVAWSRSTGNRTHSNIIDKSF------SRE-ADVTARIYSSSSS-PGDSSVEEVATRRHQ-QELHQRATRRHHRRSDRDRQRMRPT-HADDKMAATVALLKCELQATRSQVEQKEVVTRSLQRQLDQRGEIEEQIQARAEEDLVAALAKASGLKEELARTSQLLVEGALARQHLEQRCSALTQNLHESVTRTAELGEEVSVSRAELVRISGALHARRGTDVVDAERAFGEELQRVQENATREARGLRQXXXXXXXXXXXXXXXXXXSCGERESWREXXXXXXXXXXXLRETVHALRQYSENDTIDRLLGQARAKPA 1095
MEALSRKTEKEKL +LE MLADAT DDAS VSFGSE P K+ + P SPR D A+ PV WSR + ++D RE ADVT RIYSSSSS + S E V RRHQ + H+ H RR+DR R++ PT D + AATVALL EL RSQ+EQK+VV RSLQRQL+QRGEIE Q QARAEEDLVAALAKASGLKEEL RTSQLLV+GALARQHLEQRCS LT+ L +S TRTAEL EV+VSRAE+VRISGALHARR TDVVDAERAFGEELQRVQE+A RE R L+Q +CGER+SWRE LRETV ALRQYSENDTID+LLGQA A A
Sbjct: 1 MEALSRKTEKEKLADLEAMLADATCSGDVTDDASLVSFGSEEPTPTKHHYVPRSPRDDAASNTAGPWRPVGWSRVVDTSVPT-VVDNPVLEAGVGGREVADVTTRIYSSSSSCTTERSTERVVPRRHQGKRPHRHTAADHERRTDRRRRQRHPTPERDHETAATVALLTNELVIVRSQIEQKDVVVRSLQRQLEQRGEIEAQTQARAEEDLVAALAKASGLKEELTRTSQLLVDGALARQHLEQRCSVLTEELQKSATRTAELENEVAVSRAEVVRISGALHARRSTDVVDAERAFGEELQRVQESAARETRTLKQEASGLRTLLEQTKSKLRNACGERDSWREEADSFSSEAATLRETVQALRQYSENDTIDQLLGQAWANLA 383
BLAST of mRNA_C-linearis_contig102.795.1 vs. uniprot
Match: A0A6H5K4I8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I8_9PHAE) HSP 1 Score: 341 bits (875), Expect = 4.500e-103 Identity = 257/531 (48.40%), Postives = 323/531 (60.83%), Query Frame = 1
Query: 1303 LDLATTPTRKQREERHEVEEAGHEAATNSLRQELSEVKKTLAVMEEELTTAVLAAREQGVERAAAESCVKSLQ----REAEANARAAREDVAARRAAKVRDMAKLKNAIRQDMVEELFRLQREVREQRQEEKP-QTTDGAAPCKCQTECSRRPLGEDKACQTDDAIAPSAEEGGLVVHEDNLSRACASCXXXXXXXXXXXXDVANHASPRAATTALEEEAEKRIAAALASAAVAQVGATAWASAFSAATQLFHAALASLCDEAT---GRSGEDDGRHAFGVPLLTGTEASGSNKASTSAVVPWVPGEAKTDAATALQALRDSVQSAVEGIRLTAGRAAQET--MPPASNVTTTGSQTVAEPPAAVVPVVSRNTIG---------------SQTDEKPKRKVLWARRHGAGVQAG--GRPSRWNAETFSGGGGAPAWEGDIVRRCLEGERVDGDGEPRIKQPD-TRVEELERTAGAL----QRAEAEKEGLEQILTRRFEHEKATLLKQQRDIFEEDIGELYTSMMAMVHDF 2799
L TT +++++EE +V EA +SLRQELSE KK+LA+ EE+ AVL AR+Q RA AESCV+ LQ R+AEANARAARE V ARRAAK RDMA LK AI+QDMV EL +LQ EVR+QRQEEK T KC E SR P+G DKACQ+DD IA S++E G+++ D L+R A+C D ++ + T LE+EAEKR++AALASAA+AQVGATAWASAFSAA LFHAALASLC++A G + +GR A + L G + ++AS SA+VPW P EA+ DAA A++ LRD V+S+V+ I+ ++ T + A + T GSQT AE P VS SQTDE ++ +RH GVQ G G A G GGAPAWEG + RC EGE DGD R K D R++ELE AGAL QR+E EK LE+ LTRRF+ EKA LK+QRD +E DIG L+ S MA++ DF
Sbjct: 7 LAAPTTVSQEEKEEHEKVLGDRQEAEIHSLRQELSEAKKSLAMKGEEVAAAVLEARQQAAMRAVAESCVEGLQATLGRKAEANARAAREHVVARRAAKARDMANLKIAIQQDMVNELHKLQCEVRKQRQEEKKLHGTKDTELSKCSGERSREPVGVDKACQSDDTIASSSKEEGVMMESDILNRVGAACSACGVDLTDSGADGSSIVASPKVTVVLEDEAEKRVSAALASAAMAQVGATAWASAFSAARCLFHAALASLCEQADCLFGADAKGNGRQALVLSPLVGLTTALRDEAS-SAMVPWAPSEAEADAAAAMEVLRDDVESSVKRIQSALADHSERTAALSLALTMATVGSQTTAESPTDSAITVSXXXXXXXXXXXXXXXXXXXXSQTDEVGIMELKVGQRHNVGVQTGYLGGRRPETAPGAGGRGGAPAWEGGMESRCREGETYDGDRLWRPKSEDHARMDELELKAGALSAALQRSEKEKSSLERSLTRRFKREKAMQLKKQRDKYEADIGALHASTMALLQDF 536 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.795.1 >prot_C-linearis_contig102.795.1 ID=prot_C-linearis_contig102.795.1|Name=mRNA_C-linearis_contig102.795.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=955bp MEALSRKTEKEKLLELEEMLADATTLTADDASTVSFGSELHRPMKYQHEPback to top mRNA from alignment at C-linearis_contig102:445321..451073+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.795.1 ID=mRNA_C-linearis_contig102.795.1|Name=mRNA_C-linearis_contig102.795.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5753bp|location=Sequence derived from alignment at C-linearis_contig102:445321..451073+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:445321..451073+ >mRNA_C-linearis_contig102.795.1 ID=mRNA_C-linearis_contig102.795.1|Name=mRNA_C-linearis_contig102.795.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5730bp|location=Sequence derived from alignment at C-linearis_contig102:445321..451073+ (Chordaria linearis ClinC8C monoicous)back to top |