mRNA_C-linearis_contig102.785.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig102.785.1
Unique NamemRNA_C-linearis_contig102.785.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 426 bits (1095), Expect = 7.970e-140
Identity = 199/251 (79.28%), Postives = 214/251 (85.26%), Query Frame = 3 
Query:   27 MVRTAFVALACGMLGAANALKVKTPEEGLTVISDRTYTVEWDGTSSNNRFEIDLYYCGSYCMSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTSGGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMGDIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTDGSGDCGTYVTSICDKESIGCKDSAGDYDVKIPCDTPAGEYAVRVGRFEDASLYDCSAPFMVVAGDSS 779
            M RT FVALACGMLGAANALKV TP +GLTVI+DRTYTVEW GTSS+NRFEIDLYYCGS CM D+CG+WVT LCPYGE GCPDNEGDYDIVMPEPM GTSG GYKVRV DI +EEDADCSD+FYLLAS+EAP VGD DGPTL+VTSPA GD+A  C EYTVEFDYDNGVGS VDRF+IDLY  DG GDCGTYV SICDK +IGCKDS GDYDV+IPCDT AGEY +RV RFED SLY CS  F +  GD S
Sbjct:    1 MTRTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDS 251
[Close]
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 378 bits (970), Expect = 2.110e-121
Identity = 180/249 (72.29%), Postives = 195/249 (78.31%), Query Frame = 3 
Query:   27 MVRTAFVALACGMLGAANALKVKTPEEGLTVISDRTYTVEWDGTSSNNRFEIDLYYCGSYCMSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTSGGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMGDIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTDGSGDCGTYVTSICDKESIGCKDSAGDYDVKIPCDTPAGEYAVRVGRFEDASLYDCSAPFMVVAGD 773
            M RT FVALAC MLGAANAL+V TP   L V++DRTYTVEW G  S  RFEIDLY+CGS CM D CG+WVT LCPYGE GCPDNEGDYDIVMPEPM G S  GYKVRVMD+ +E+  DCSD FYL+AS +AP  G   G  L VTSPA GD AEA  EYTVEFDYDNGVGSKVDRFSIDLY  DG GDCGTYVTSICDK SIGCKDS GDYDV+IP DT AG+Y +RVGRFED  LY CS  F ++ GD
Sbjct:    1 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGD 248
[Close]
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 369 bits (946), Expect = 8.130e-118
Identity = 172/251 (68.53%), Postives = 196/251 (78.09%), Query Frame = 3 
Query:   27 MVRTAFVALACGMLGAANALKVKTPEEGLTVISDRTYTVEWDGTSSNNRFEIDLYYCGSYCMSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTSGGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMGDIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTDGSGDCGTYVTSICDKESIGCKDSAGDYDVKIPCDTPAGEYAVRVGRFEDASLYDCSAPFMVVAGDSS 779
            MVRT FVALACGMLG A+AL+V TP  G  V+S R YTVEW GT SN RFEIDLYYC S CM DECGEWVT LCPYGE GCPDNEGDYDIVMPEPM GTSG GYKVRV D+D+E+ +DCSD+FYL+A  +AP   DA GP + VTSP+ GD AEA  EYTVEFDYDNG+GS V RF+IDLY   GSGDCGT++ ++CDK +IGCKDS GDYDV+IP D  AG Y +RVG FED S+Y CS  F ++  D S
Sbjct:    2 MVRTGFVALACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDS 252
[Close]
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 364 bits (934), Expect = 2.860e-116
Identity = 169/207 (81.64%), Postives = 183/207 (88.41%), Query Frame = 3 
Query:   27 MVRTAFVALACGMLGAANALKVKTPEEGLTVISDRTYTVEWDGTSSNNRFEIDLYYCGSYCMSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTSGGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMGDIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTDGSGDCGTYVTSICDKESIGCKDS 647
            M RT FVALACGMLGAANALKV TP +GLTVI+DRTYTVEW GTSS+NRFEIDLYYCGS CM D+CG+WVT LCPYGE GCPDNEGDYDIVMPEPM GTSG GYKVRV DI +EEDADCSD+FYL+AS+EAP VGD DGPTL+VTSPA GD+A  C EYTVEFDYDNGVGS+VDRF+IDLY  DG GDCGTYV SICDK +IGCKDS
Sbjct:    2 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208
[Close]
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 353 bits (907), Expect = 8.550e-112
Identity = 163/239 (68.20%), Postives = 190/239 (79.50%), Query Frame = 3 
Query:   63 MLGAANALKVKTPEEGLTVISDRTYTVEWDGTSSNNRFEIDLYYCGSYCMSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTSGGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMGDIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTDGSGDCGTYVTSICDKESIGCKDSAGDYDVKIPCDTPAGEYAVRVGRFEDASLYDCSAPFMVVAGDSS 779
            MLGAA+AL+V TP EG  V++ R YTVEW GT SNNR+EIDLYYCGS CM DECG+WVT LCPYGE GCPDNEGDYDIVMPEPM GTSG GYKVRV D+D+++  DCSD+FYL+A  EAP  GDA GP + VTSP+ GD AEA  EYTVEFDYDNG+GS V RF+IDLY+  GSGDCGT++ ++CDK +IGCKDS GDYDV+IP D  AG Y +RVG FED S+Y CS  F ++  D S
Sbjct:    1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDS 239
[Close]
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 323 bits (829), Expect = 1.150e-100
Identity = 160/250 (64.00%), Postives = 187/250 (74.80%), Query Frame = 3 
Query:   27 MVRTAFVALACGMLGAANALKVKTPEEGLTVISDRTYTVEWDGTSSNNRFEIDLYYCGSYCMSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTSGGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMGDIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTDGSGDCGTYVTSICDKESIGCKDSAGDYDVKIPCDTPAGEYAVRVGRFEDASLYDCSAPFMVVAGDS 776
            M RTAF ALA GMLGAANAL+V +P  G  V++D  YTVEW G +S  R++IDLYYCGS CM DECG+WVT LCPYG+ GCPD +GDYD+VMPEPM GTS G YKV V D  +E D  CS  F L+AS EAP   D  G  + VTSP+ GD A A  EYTVEFDYDNG+GS V+RF+IDLY++ GSGDCGTYVT+ICDK SIGCKDS GDYDV IP  T +G Y++RVG FED  +Y CS  F +V G+S
Sbjct:    1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATSG-RYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSG-YKVMVTDSSDESDYGCSGDFTLIASTEAPDATDM-GAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGES 247
[Close]
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 321 bits (823), Expect = 9.350e-100
Identity = 160/247 (64.78%), Postives = 190/247 (76.92%), Query Frame = 3 
Query:   27 MVRTAFVALACGMLGAANALKVKTPEEGLTVISDRTYTVEWDGTSSNNRFEIDLYYCGSYCMSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTSGGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMGDIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTD-GSGDCGTYVTSICDKESIGCKDSAGDYDVKIPCDTPAGEYAVRVGRFEDASLYDCSAPFMVV 764
            M RTAF ALA GMLGAANAL+V +P  G++VI+DRTYTVEW GTS ++RFEIDLYYCGS+CM DECG+WVT LCPYG  GCPD +GDYDIVMPEPM GTS G YKV V D ++E    CS  F L+AS +AP  G+  G +L VTSP+ GD A A   YTVE+DY+NG+GS  DRF+IDLY+   G+GDCGTYV ++CDK SIGC DS GDYDV+IP DTPAG Y+VRVG F D  ++DCS  F +V
Sbjct:    1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTS-DSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTSSG-YKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEV-GYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV 244
[Close]
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 3.600e-99
Identity = 153/249 (61.45%), Postives = 189/249 (75.90%), Query Frame = 3 
Query:   27 MVRTAFVALACGMLGAANALKVKTPEEGLTVISDRTYTVEWDGTSSNNRFEIDLYYCGSYCMSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTSGGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMGDIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTDGSGDCGTYVTSICDKESIGCKDSAGDYDVKIPCDTPAGEYAVRVGRFEDASLYDCSAPFMVVAGD 773
            M RTAF A+A GML AANAL+V +P+ G++V++DR YTVEW GT++  RFEIDLYYC S+CM D CG+WVT LCPYG  GCPD+ GDYDI+MPEPM GTS G YKV V + ++E D  CSD F L+AS +AP+ G+  G +L VTSP+ GD A A   YTVE+DY+NG GS  DRF++DLY   G+GDCGTYVT++CD+ SIGC DS GDYDV+IP DTPAG Y++RVG F+D  +YDCS  F V   D
Sbjct:    1 MARTAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTG-RFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSSG-YKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEM-GYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSD 246
[Close]
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 9.460e-84
Identity = 142/251 (56.57%), Postives = 167/251 (66.53%), Query Frame = 3 
Query:   27 MVRTAFVALACGMLGAANALKVKTPEEGLTVISDRTYTVEWDGTSSNNRFEIDLYYCGSYCMSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTSGGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMGDIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTDGSGDCGTYVTSICDKESIGCKDSAGDYDVKIPCDTPAGEYAVRVGRFEDASLYDCSAPFMVVAGDSS 779
            M RTAF ALA GMLGA NAL+V +P  G  +++  + TVEW GTSS  RF+IDLYYCGS CM DECG+WVT LCPYG+ GCPD +GDYD+VMPEPM GTS G YKV V D  +E D  CS +F L+AS                                  FD+DNG GS V+RFSIDLY + GSGDCGTYVTSICDK SIGCKDS GDYDV IP DT +G Y++RVG FED  ++ CS  F ++ G+SS
Sbjct:    1 MARTAFAALAFGMLGAVNALEVTSPAAGDMIVAASSTTVEWTGTSSG-RFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSG-YKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGGESS 248
[Close]
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 1.570e-81
Identity = 131/189 (69.31%), Postives = 150/189 (79.37%), Query Frame = 3 
Query:  210 MSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTSGGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMGDIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTDGSGDCGTYVTSICDKESIGCKDSAGDYDVKIPCDTPAGEYAVRVGRFEDASLYDCSAPFMVVAGDS 776
            + DECGEWVT LCPYG  GCPDNEGDYDIVMPEPM GTSG GYKVRV D+D  +DADCSD+FYL+AS EAP VG  D P L VTSP+ GD A+A  EYTVEFDYDNGVGS+VDRF IDLY+  G+GDCGT+V ++CDKE+IGCKDS GDYDV+IP     G Y++RVGRFED +LY CS  F +V   S
Sbjct:   12 VEDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVGSSS 200
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JRG9_9PHAE7.970e-14079.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL2_ECTSI2.110e-12172.29EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
A0A6H5JFT9_9PHAE8.130e-11868.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH21_ECTSI2.860e-11681.64Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]
D8LI46_ECTSI8.550e-11268.20EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G3E8_ECTSI1.150e-10064.00Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
D7G3F0_ECTSI9.350e-10064.78EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JY62_9PHAE3.600e-9961.45GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
A0A6H5KP11_9PHAE9.460e-8456.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEJ8_9PHAE1.570e-8169.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig102contigC-linearis_contig102:333666..338402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSecreted protein similar to EsV-1-163
Ec32 orthologEc-26_003200.1
Exons5
Model size2770
Cds size867
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927369.6524494-UTR-C-linearis_contig102:333665..3355421622927369.6524494-UTR-C-linearis_contig102:333665..335542Chordaria linearis ClinC8C monoicousUTRC-linearis_contig102 333666..335542 -
1690879658.5532632-UTR-C-linearis_contig102:333665..3355421690879658.5532632-UTR-C-linearis_contig102:333665..335542Chordaria linearis ClinC8C monoicousUTRC-linearis_contig102 333666..335542 -
1622927369.714644-UTR-C-linearis_contig102:338376..3384021622927369.714644-UTR-C-linearis_contig102:338376..338402Chordaria linearis ClinC8C monoicousUTRC-linearis_contig102 338377..338402 -
1690879658.6443946-UTR-C-linearis_contig102:338376..3384021690879658.6443946-UTR-C-linearis_contig102:338376..338402Chordaria linearis ClinC8C monoicousUTRC-linearis_contig102 338377..338402 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927369.6639042-CDS-C-linearis_contig102:335542..3357871622927369.6639042-CDS-C-linearis_contig102:335542..335787Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 335543..335787 -
1690879658.5730426-CDS-C-linearis_contig102:335542..3357871690879658.5730426-CDS-C-linearis_contig102:335542..335787Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 335543..335787 -
1622927369.6737292-CDS-C-linearis_contig102:336054..3361901622927369.6737292-CDS-C-linearis_contig102:336054..336190Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 336055..336190 -
1690879658.5909925-CDS-C-linearis_contig102:336054..3361901690879658.5909925-CDS-C-linearis_contig102:336054..336190Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 336055..336190 -
1622927369.6824276-CDS-C-linearis_contig102:337008..3373051622927369.6824276-CDS-C-linearis_contig102:337008..337305Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 337009..337305 -
1690879658.6077657-CDS-C-linearis_contig102:337008..3373051690879658.6077657-CDS-C-linearis_contig102:337008..337305Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 337009..337305 -
1622927369.6907551-CDS-C-linearis_contig102:337955..3380401622927369.6907551-CDS-C-linearis_contig102:337955..338040Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 337956..338040 -
1690879658.624587-CDS-C-linearis_contig102:337955..3380401690879658.624587-CDS-C-linearis_contig102:337955..338040Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 337956..338040 -
1622927369.7026558-CDS-C-linearis_contig102:338272..3383761622927369.7026558-CDS-C-linearis_contig102:338272..338376Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 338273..338376 -
1690879658.634441-CDS-C-linearis_contig102:338272..3383761690879658.634441-CDS-C-linearis_contig102:338272..338376Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 338273..338376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig102.785.1prot_C-linearis_contig102.785.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig102 335543..338376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig102.785.1

>prot_C-linearis_contig102.785.1 ID=prot_C-linearis_contig102.785.1|Name=mRNA_C-linearis_contig102.785.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=289bp
MVRTAFVALACGMLGAANALKVKTPEEGLTVISDRTYTVEWDGTSSNNRF
EIDLYYCGSYCMSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTS
GGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMG
DIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTDGSGDCGTYVTSICDKE
SIGCKDSAGDYDVKIPCDTPAGEYAVRVGRFEDASLYDCSAPFMVVAGDS
SDSSDDSNSSDSSDSSDDSDDGSMSYSYSYSYSYSHKF*
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mRNA from alignment at C-linearis_contig102:333666..338402-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig102.785.1 ID=mRNA_C-linearis_contig102.785.1|Name=mRNA_C-linearis_contig102.785.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4737bp|location=Sequence derived from alignment at C-linearis_contig102:333666..338402- (Chordaria linearis ClinC8C monoicous)
TTCCTCTACACCTTTTACGCGACAAGATGGTGCGCACTGCTTTCGTTGCT
TTGGCTTGCGGCATGCTCGGCGCTGCCAACGCCCTCAAGGTCAAGACGCC
GGAGGAGGGCTTGACGGTGATCTCGGACCGGTAAGTTTTTTGTATCAAGA
GTGAGAGAGAGCACGATCCGCCCACCAAATACACGACCATGGCTAACAAG
CTTGCCAGCCATCACCGCTGTTCTTGGTGGACCGCAGGAGCAAGTGCGAG
ATAGAAATGTAAAGACACGCGACCACCCTCACCACCAACCAACGAAGAAT
TGCGGTCTGAAATATCTGGATGTATCTGCTTTCCCCGGCCTCCTTTGCTT
TGCGACGCACAGCACGTACACCGTCGAGTGGGACGGAACCAGCAGCAACA
ACCGCTTTGAGATCGACCTCTACTACTGTGGCTCCTACTGCATGAGCGTA
AGTCGTTCGTGGCAAATGCGCCCAACTAAATTGCGTGAGAGGGGGAAGCG
GGAAAGAGCGCGCGCGTTCTTTTGTTGCTTTTTTTCACCCGCGCTCTCTC
TTTTCTCGTGAGACTTTCCCCCCCTTTTCTCTTGCCTCGATCCTGTCCAC
CATCTGTTTGGCCGTAGGGTTGTGGCTAGGCACGAGGCACGTTTGGACTC
GGCTGTGTTTGTACGATACAGAATATCGCATAGACCCTCCCGTATTTTGC
GTTTGCCCCCTCTTCTGGATTGATACACTCACAGGAAAAGAGGCTCTTGA
GAGCGTACGCAAATGTGCAAAATTTGCTTTGCCTGTGTTCTTGTTTTTTA
TTCGAGATCTCACGCCGTCCAATTCGGGAGATTGTCGCACAAACGGGGGG
CATACGATAGCCCATTCAGTTAGGCCGGCGACAGCTGCCGTCGTTGACGC
CCATTACCGCTGTACAGCTCCCCCAATCGTCGTCGCCAACGGTTGTGTTT
CAGAGCGATATATTGGAAGTGGAAGAGTAATAGTTGGGAGATGTTTCAGT
AAACTGGTTGGCAGCTTGCTCGAACAGTTGGCGCTCCGGAAAATAGTGAC
GCGTCCTCATAAATGCCCCCCCTTTCCCTTACTAACTGCCCCTACAGGAT
GAGTGCGGTGAGTGGGTGACCCCCCTATGCCCCTACGGCGAGGCCGGCTG
CCCCGACAACGAGGGTGACTACGACATCGTTATGCCTGAACCCATGAAGG
GAACCTCCGGGGGAGGATACAAGGTGCGTGTGATGGACATCGACAACGAG
GAGGACGCGGACTGCTCAGACCAGTTCTACCTGCTCGCCTCCAACGAGGC
GCCTAAGGTTGGGGACGCCGATGGGCCGACCCTGAAGGTCACCTCACCCG
CTATGGGCGACATCGCGGAGGCGTGCAACGAATACACCGTCGAGGTAAAA
GCAGCTGCGTACAGATTGTGTTTTGGAGTGGCGTCGTATAAATCAGCTCG
AAACCCATCGCTTTACCATACACACCTAGAGGTGCGTTCGCCACCCCCTG
ATGCTTGAAGATGCTTACGTTATTTCATGTGTTGTTGTACGTTCAATACT
CCTGGAAATGGATCGGTTGAACACGACGAGCACACAAAACACGCTTTTAC
CCGTTCCTTATACGGCTGCGCGCAGCGCTTTCACGCTTTACCTTGAACTC
CTTTTCCGATAACAATATTTCAGCTTCACGTTTTACCTTTTTCCTCTCTT
TGGTATATACCCTCGACGTAAAATCAAGACTTCACGCAGCGCAAATAATT
TTCTTGGTGGCCCATCTGACCACAACTCAGTTTCGCAGCTATGATTGTTT
GGTACACCCATTCCAGGTCCATGGTATTGTTGAATATCCGCGGTGTGACG
ACAAATTTGTCTTGTTATCTTGCTGCCTTTTTAGTGCTGTTGTACCGTCG
AGAAGCACGGAGCGTGTACCATCACGACAATCGCAAAACAACCAGGAGCT
CACATTCGGACTGCCAATTCTGAACTCTCCGTCTTTTTTATGCATGCCCG
CCCTGTTTTCTGGAAGGGGAAAATTGAACAAAGGCTACTTGTCCATCCAA
CATTGTCTTCGGTATTTTCCGGACCGTTGGCTGGGCCTTTTGCGTCATCC
CTTCCTGACTTGATTACAGAACACATGTAAAAAGCATCGTTTGCTCACAC
ACAACAAACGCGTTTCGTCCCGACATCCTTTTCCGTCAACGCCCACCTCT
GTGGTCGATTAGTTCGACTACGACAACGGTGTCGGATCCAAGGTGGACCG
ATTCTCGATTGACCTCTACACCACCGACGGAAGCGGCGACTGCGGAACCT
ACGTGACGTCAATCTGCGACAAGGAGTCCATTGGCTGCAAGGACTCCGGT
GAGCTTAGCTTGGTTTTTTGATGGAACATCAGTTGTTTAGGGCTGGCAGG
CAACCAAGTCCCAACGTGTAGCTTGGGGCCAAATTCTACCAAGGATCCCT
CCCTGCATCCCATGATATGTTACCTGTGGAGGTTCCACGGGCACTGACTG
ACAGCTGCATCGGATATTTTGTGTTGCGTCTAGTTTCGCTATGATATTTT
TCATGTCTTTCATCTTCACACGGACCTGAACACCTACTTCTTGTCCCGTG
GTGTCTGTTCTGCAGCCGGTGACTACGACGTCAAAATCCCCTGTGACACC
CCGGCCGGAGAGTACGCCGTCCGAGTGGGCCGCTTCGAGGACGCCAGTCT
CTACGACTGCTCCGCGCCTTTCATGGTGGTCGCTGGGGACAGCTCGGACA
GCTCGGACGACTCGAACAGCTCGGACAGCTCGGACAGCTCGGACGACTCG
GACGATGGGTCCATGTCTTACTCTTACTCTTATTCTTACTCTTACTCTCA
CAAGTTCTAAATCAATTCATGCGGTTCTAGGACATCATTTTTGTTGAATG
TTCGCGTGGGCGGCGGCGGGCTTAAGTCAAAACATAACCTTGTGTTGCGT
GTTGTTTTTAGCACGTAGTGCAGGAGAAAAGTGAGCTGCATTGCGAACTG
CTCGATGTGGTTTTTTGTCAACCTGACGGTTTGTCGGGCTCGTGTACTAT
GTTTTTTGGACCGGGATCACTCACGGGAAGACATCAGAAATAATCGCAAG
TACCGGGGGGTTCAGATCTGGTAGAGGCGGGAATGCGTTTGGTCGCCTTG
GCGAAGGGCGTTGGAGAGCTTTTTATTGCTTGCGGCGCTCTTGAGCGTCG
ATGGGTTACGAAAACACGGCTCAATTCTGCGATCGTGCGTCCTTGGCTTT
CATGTTCCAAGTCGGGTGAAGGTTTCACCCTCATTTGCTTCCTTTGTGTA
AAGACTTTTTGGTTGCCCGCGGTACTTGGTGTAACTGCTGCTTACTAGCA
ATATTTTGTTCGGTATTTCTGTTCTATTATGTTGATGTTTTTGCCTGAAG
ACAGGGGCAATGTTTGCTCGCGAGTTGTCTGATTCGGTCGGTCAACCGTT
TTGAGCGCGTTTTCCCCTTATTTAATTTGTGCGCAAGCCTCAAGTGACGA
TCCCAACTGCTGCTTTTTCCCTTGGGGAGAGAAGTGGTGATCTGGCCGCG
ACAAGTGAACGCTTCGTGTTGTGATTGTGCGTCGTCTGCGGCTGGTTTGC
TGTTGGCTGTGTGCCTGAAAACTTTTGATGGTTTGCTCTTGAAAGCTTGG
TTGAGAATTGGTTTGCTTTTGTTGCGTACCTGAAAACTTTGATGGCTTGC
TCTTGAAGGCTTGGTTGAGAATGTTACTCTGGCACCAATCGATGCCCCGT
GTGCTAGCAATTAATGAAGTGCCTGTCGGCGCCATTCCTGTAACATTAAT
TTCAACTTAGTCAAATTGACCCAGCTTCCGATGTGTGATGGACTACGGTT
TTGGGGCGGCCTTCGGCTGACCATGTGGCCCGTCAGTATATTCTCAACAA
GTTTGGTGTGCATCCCTTTGCGCCTCTAGTGCTAAGTCTTGTTTCGCCGG
CGGTCCCGGTGAGGACGGCCGCGATGTATGCAGGATGGCACTTCGAAATG
GTTCACGCCCGGCTGAGTAAATTGGATACCGTTATTTCTGGAGGATGTAA
TGGATGGAAATTTACTGAGAAACGACCAAAACGTGTACAATTATTTATAG
GTTTCCTACAACCATTTTTGAGAGCTGTTACATTTTTCAGTATGAAATTG
GTTGTTGTCTCTGGCCTACTAGAATGCGATTGTCTTTCTTGTGACAGAAA
ATTGCATGTGTTCCTGGAACAGAAAAGTTTGAATCACACCACAATAGGCA
AAGCCTCGCGAACGCTGGGTCTCAAAAGCCGATCTGAGCTCCTATGCGAG
ATTCTAGGTTGCGAGGGCATTTGAGTAGACGAGATATTTCCGAGCTCCCT
CGTCGCGGTTAGAGCACGTCTAGTCTGTCGGGGCGCGAGGTCTCTGGTAC
CGCATACAAGCTGGATTGACGTAAAAGCTCTTTGGTTGGGAAATTCATTT
AGTAAGTCGAATCGAGTGGAGGTGTTCGGCCCTTCCTGTCATATGAAGTA
GAACCAGAACCTACGCCTTTTGGTGTAAACTTCGATAGGTTAACAAAAGA
CCGGCAAAAAACTTGACCGCCTCCTTTATAGGGGGGGGAGAAAAAAATCG
ACACGCACGCTCGAGCAGTTGACGCAAAAAAAAGAGACAAGAGAGAGCCA
ACGCGCCAAGCCCCAACGACGCCGTCAGATTCGTGGAAGGAGACCTAACT
TTGCGTTATTTATATAGACAAGCTGAGTGAAGCGGCG
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Coding sequence (CDS) from alignment at C-linearis_contig102:333666..338402-

>mRNA_C-linearis_contig102.785.1 ID=mRNA_C-linearis_contig102.785.1|Name=mRNA_C-linearis_contig102.785.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at C-linearis_contig102:333666..338402- (Chordaria linearis ClinC8C monoicous)
ATGGTGCGCACTGCTTTCGTTGCTTTGGCTTGCGGCATGCTCGGCGCTGC
CAACGCCCTCAAGGTCAAGACGCCGGAGGAGGGCTTGACGGTGATCTCGG
ACCGATGGTGCGCACTGCTTTCGTTGCTTTGGCTTGCGGCATGCTCGGCG
CTGCCAACGCCCTCAAGGTCAAGACGCCGGAGGAGGGCTTGACGGTGATC
TCGGACCGCACGTACACCGTCGAGTGGGACGGAACCAGCAGCAACAACCG
CTTTGAGATCGACCTCTACTACTGTGGCTCCTACTGCATGAGCCACGTAC
ACCGTCGAGTGGGACGGAACCAGCAGCAACAACCGCTTTGAGATCGACCT
CTACTACTGTGGCTCCTACTGCATGAGCGATGAGTGCGGTGAGTGGGTGA
CCCCCCTATGCCCCTACGGCGAGGCCGGCTGCCCCGACAACGAGGGTGAC
TACGACATCGTTATGCCTGAACCCATGAAGGGAACCTCCGGGGGAGGATA
CAAGGTGCGTGTGATGGACATCGACAACGAGGAGGACGCGGACTGCTCAG
ACCAGTTCTACCTGCTCGCCTCCAACGAGGCGCCTAAGGTTGGGGACGCC
GATGGGCCGACCCTGAAGGTCACCTCACCCGCTATGGGCGACATCGCGGA
GGCGTGCAACGAATACACCGTCGAGGATGAGTGCGGTGAGTGGGTGACCC
CCCTATGCCCCTACGGCGAGGCCGGCTGCCCCGACAACGAGGGTGACTAC
GACATCGTTATGCCTGAACCCATGAAGGGAACCTCCGGGGGAGGATACAA
GGTGCGTGTGATGGACATCGACAACGAGGAGGACGCGGACTGCTCAGACC
AGTTCTACCTGCTCGCCTCCAACGAGGCGCCTAAGGTTGGGGACGCCGAT
GGGCCGACCCTGAAGGTCACCTCACCCGCTATGGGCGACATCGCGGAGGC
GTGCAACGAATACACCGTCGAGTTCGACTACGACAACGGTGTCGGATCCA
AGGTGGACCGATTCTCGATTGACCTCTACACCACCGACGGAAGCGGCGAC
TGCGGAACCTACGTGACGTCAATCTGCGACAAGGAGTCCATTGGCTGCAA
GGACTCCGTTCGACTACGACAACGGTGTCGGATCCAAGGTGGACCGATTC
TCGATTGACCTCTACACCACCGACGGAAGCGGCGACTGCGGAACCTACGT
GACGTCAATCTGCGACAAGGAGTCCATTGGCTGCAAGGACTCCGCCGGTG
ACTACGACGTCAAAATCCCCTGTGACACCCCGGCCGGAGAGTACGCCGTC
CGAGTGGGCCGCTTCGAGGACGCCAGTCTCTACGACTGCTCCGCGCCTTT
CATGGTGGTCGCTGGGGACAGCTCGGACAGCTCGGACGACTCGAACAGCT
CGGACAGCTCGGACAGCTCGGACGACTCGGACGATGGGTCCATGTCTTAC
TCTTACTCTTATTCTTACTCTTACTCTCACAAGTTCTAACCGGTGACTAC
GACGTCAAAATCCCCTGTGACACCCCGGCCGGAGAGTACGCCGTCCGAGT
GGGCCGCTTCGAGGACGCCAGTCTCTACGACTGCTCCGCGCCTTTCATGG
TGGTCGCTGGGGACAGCTCGGACAGCTCGGACGACTCGAACAGCTCGGAC
AGCTCGGACAGCTCGGACGACTCGGACGATGGGTCCATGTCTTACTCTTA
CTCTTATTCTTACTCTTACTCTCACAAGTTCTAA
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