mRNA_C-linearis_contig102.784.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig102.784.1
Unique NamemRNA_C-linearis_contig102.784.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig102.784.1 vs. uniprot
Match: D7FSJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ9_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 8.820e-24
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 MGASYSLVGVSYHLALGAGSRNHFASQMRLRGRWHTYDCLDGGVVTSFDNFDPAWNASSPH 183
            MGA+YSLVGVSYH+A G   +NHF +Q+R+RGRWH YDCL GG +TS D FD  WN+SS +
Sbjct:    1 MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAITSSDTFDADWNSSSQY 61
[Close]
BLAST of mRNA_C-linearis_contig102.784.1 vs. uniprot
Match: D7G7U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U5_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.210e-22
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 MGASYSLVGVSYHLALGAGSRNHFASQMRLRGRWHTYDCLDGGVVTSFDNFDPAWNASS 177
            MGA+YSLVGVSYH+A G   +NHF +Q+R+RGRWH YDCL GG VTS D FD  WN+SS
Sbjct:    1 MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAVTSTDTFDADWNSSS 59
[Close]
BLAST of mRNA_C-linearis_contig102.784.1 vs. uniprot
Match: A0A6H5KDI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI5_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.240e-17
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 MGASYSLVGVSYHLALGAG-SRNHFASQMRLRGRWHTYDCLDGGVVTSFDNFDPAWNASSPH 183
            MG +YSLVG+S  LALG G +RNHF SQ+ +RGRWH  DCL GG+VTS D F   W+ SS H
Sbjct:  102 MGVTYSLVGISCFLALGGGPNRNHFVSQVWIRGRWHKDDCLQGGIVTSSDAFGSGWHVSSVH 163
[Close]
BLAST of mRNA_C-linearis_contig102.784.1 vs. uniprot
Match: A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.430e-6
Identity = 20/32 (62.50%), Postives = 23/32 (71.88%), Query Frame = 1 
Query:   88 LRGRWHTYDCLDGGVVTSFDNFDPAWNASSPH 183
            L GRWH YDCL GG+VTS D +D  W+ SS H
Sbjct:  574 LCGRWHKYDCLQGGIVTSSDAYDSGWHVSSVH 605
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FSJ9_ECTSI8.820e-2463.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G7U5_ECTSI1.210e-2267.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDI5_9PHAE2.240e-1761.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPV6_9PHAE3.430e-662.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig102contigC-linearis_contig102:274166..274348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927369.6229796-CDS-C-linearis_contig102:274165..2743481622927369.6229796-CDS-C-linearis_contig102:274165..274348Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 274166..274348 -
1690879658.5423882-CDS-C-linearis_contig102:274165..2743481690879658.5423882-CDS-C-linearis_contig102:274165..274348Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 274166..274348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig102.784.1prot_C-linearis_contig102.784.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig102 274166..274348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig102.784.1

>prot_C-linearis_contig102.784.1 ID=prot_C-linearis_contig102.784.1|Name=mRNA_C-linearis_contig102.784.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=61bp
MGASYSLVGVSYHLALGAGSRNHFASQMRLRGRWHTYDCLDGGVVTSFDN
FDPAWNASSPH
back to top

mRNA from alignment at C-linearis_contig102:274166..274348-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig102.784.1 ID=mRNA_C-linearis_contig102.784.1|Name=mRNA_C-linearis_contig102.784.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at C-linearis_contig102:274166..274348- (Chordaria linearis ClinC8C monoicous)
ATGGGGGCATCATATTCTTTGGTCGGAGTTTCGTACCATCTGGCGCTTGG
CGCCGGCTCTCGGAACCATTTCGCATCCCAAATGCGACTTCGGGGAAGAT
GGCACACCTACGATTGTCTGGACGGCGGGGTCGTCACTTCTTTCGACAAC
TTCGACCCTGCGTGGAACGCTTCGTCTCCACAC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig102:274166..274348-

>mRNA_C-linearis_contig102.784.1 ID=mRNA_C-linearis_contig102.784.1|Name=mRNA_C-linearis_contig102.784.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at C-linearis_contig102:274166..274348- (Chordaria linearis ClinC8C monoicous)
ATGGGGGCATCATATTCTTTGGTCGGAGTTTCGTACCATCTGGCGCTTGG
CGCCGGCTCTCGGAACCATTTCGCATCCCAAATGCGACTTCGGGGAAGAT
GGCACACCTACGATTGTCTGGACGGCGGGGTCGTCACTTCTTTCGACAAC
TTCGACCCTGCGTGGAACGCTTCGTCTCCACACATGGGGGCATCATATTC
TTTGGTCGGAGTTTCGTACCATCTGGCGCTTGGCGCCGGCTCTCGGAACC
ATTTCGCATCCCAAATGCGACTTCGGGGAAGATGGCACACCTACGATTGT
CTGGACGGCGGGGTCGTCACTTCTTTCGACAACTTCGACCCTGCGTGGAA
CGCTTCGTCTCCACAC
back to top