mRNA_C-linearis_contig102.774.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig102.774.1 vs. uniprot
Match: A0A6H5KA59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA59_9PHAE) HSP 1 Score: 394 bits (1011), Expect = 1.610e-126 Identity = 202/359 (56.27%), Postives = 251/359 (69.92%), Query Frame = 3
Query: 852 VPLMDPESHTQLNLTAAKGSNLQELDLECARKHLEAIKDSVTTHEELHEFILMEGEELARELNLAGLENAPGLFGDVTQQCRVAFTNKNRLIFTQANHSAEVGQPMLPFLASLLSCCQDRWSRRKWTAYYAAINASEVLQVFVQQTLLTSYETSNCTCKDAWDLICCPVGGTMYSQKGMDGTTQTLGDHDPNSCMSKWDKTRYKRHALVIRYVDCASNAVVQTTAMALPSTPAPKLYEMARLIDASITMTMADWLKHKTLPTPLVSGPFQNAPPSPSLFRRASYKGLLFVLFVISLGFLALNAAAAVFMILAIFIALGGSYYSMSTPHN---NAARAVGVMSKTLLGTQGVGLGVYAIA 1919
+P +DP S L +T+ ++L+E D+ECA KHL+AIKDSVTTH++LHEF LM+GE++ L+LAGL +APGLF D+TQ+CRV FTNK RLIFTQANHSA VG P + LASLL+CC DRWSRR WTAY A INASEVLQVFV Q L TSY+TS CT D + +CCP GG+MYS+K +DG TQTLGDHDP CMS+WDKTR+ RHALVIRYVDCAS++V++T AMA PS PA +LYEMAR I+A+IT+ M DW K K+LPT L + F N+ P A++ AAVFM+ A+ +AL G+Y T NA + +SK LG+ G G GVYAI+
Sbjct: 1 MPQIDPSSRKMLQMTSGVAADLEEWDIECATKHLDAIKDSVTTHDDLHEFTLMKGEKVVNALDLAGLVDAPGLFDDLTQRCRVVFTNKKRLIFTQANHSAVVGLPKMRCLASLLTCCHDRWSRRTWTAYCATINASEVLQVFVHQELSTSYQTSTCTFNDILEFLCCPTGGSMYSEKDIDGVTQTLGDHDPGDCMSRWDKTRFMRHALVIRYVDCASHSVLETRAMAHPSVPASQLYEMARSIEANITVRMTDWTKSKSLPTALDASRFDNSSPXXXXXXXXXXXXXXXXXXXXXXXXXAVDTTAAVFMVFAVLVALYGAYSGSRTQRRRIRNAGWWIFNVSKKTLGSNGAGAGVYAIS 359
BLAST of mRNA_C-linearis_contig102.774.1 vs. uniprot
Match: D7FH32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH32_ECTSI) HSP 1 Score: 393 bits (1009), Expect = 6.970e-125 Identity = 207/396 (52.27%), Postives = 262/396 (66.16%), Query Frame = 3
Query: 747 EVYLCTDEYPFTSKQYDREKEHLLGQDPNATIDEKVPLMDPESHTQLNLTAAKGSNLQELDLECARKHLEAIKDSVTTHEELHEFILMEGEELARELNLAGLENAPGLFGDVTQQCRVAFTNKNRLIFTQANHSAEVGQPMLPFLASLLSCCQDRWSRRKWTAYYAAINASEVLQVFVQQTLLTSYETSNCTCKDAWDLICCPVGGTMYSQKGMDGTTQTLGDHDPNSCMSKWDKTRYKRHALVIRYVDCASNAVVQTTAMALPSTPAPKLYEMARLIDASITMTMADWLKHKTLPTPLVSGPFQNAPPSPSLFRRASYKGLLFVLFVISLGFLALNAAAAVFMILAIFIALGGSYYSMSTPHNNAARA----VGVMSKTLLGTQGVGLGVYAIAF 1922
E Y TD YPFT+ Q+DRE+E+LLG + +D K+ +DP S L +T+ ++L++ D+ECARKHL+AIKDSVTTH++LH+F M+GE++ L+LAGLE APG+F +VTQ+CRV FTNK RLIFTQ VLQVFVQQ L TSY+TS CT D D +CCP GGTMYS+K + G TQTLGDHDP CMS+WDKTR+ RHALVIRYVDCASN+V +TTAMA PS PA +LYEMAR I+A+IT+ ADW+K K+LPT L +G F N+PPSP LF+R SYKGL+F+L ++SL F A+N AAVFM L++ AL G+Y T A + SK LG+ G G GVYA++F
Sbjct: 100 EAYFFTDVYPFTAAQFDRERENLLGH--HTGLDPKMAQIDPSSRKMLQMTSGVAADLEKWDIECARKHLDAIKDSVTTHDDLHQFTFMKGEKVVNALDLAGLEEAPGVFDEVTQRCRVVFTNKKRLIFTQ------------------------------------------VLQVFVQQKLTTSYQTSTCTFNDILDFLCCPTGGTMYSEKNIHGVTQTLGDHDPGDCMSRWDKTRHMRHALVIRYVDCASNSVKETTAMAHPSIPASQLYEMARSIEANITIRTADWMKCKSLPTALNAGSFNNSPPSPPLFKRKSYKGLMFLLLIVSLIFFAVNPTAAVFMFLSVLAALFGAYSGSKTQQKRVRNAGSWILNAASKRTLGSNGAGAGVYALSF 451
BLAST of mRNA_C-linearis_contig102.774.1 vs. uniprot
Match: D7FWP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP8_ECTSI) HSP 1 Score: 367 bits (942), Expect = 6.360e-117 Identity = 183/310 (59.03%), Postives = 231/310 (74.52%), Query Frame = 3
Query: 1008 MEGEELARELNLAGLENAPGLFGDVTQQCRVAFTNKNRLIFTQANHSAEVGQPMLPFLASLLSCCQDRWSRRKWTAYYAAINASEVLQVFVQQTLLTSYETSNCTCKDAWDLICCPVGGTMYSQKGMDGTTQTLGDHDPNSCMSKWDKTRYKRHALVIRYVDCASNAVVQTTAMALPSTPAPKLYEMARLIDASITMTMADWLKHKTLPTPLVSGPFQNAPPSPSLFRRASYKGLLFVLFVISLGFLALNAAAAVFMILAIFIALGGSYYSMSTPHNNAARAVGVM-----SKTLLGTQGVGLGVYAIAF 1922
M+GE L+LAG+E+APGL+ VTQQCRV FTN+ RL+FTQANHSAEVG P + LASLL+C DRWSRRKWT+YYA+I ASEVLQVFVQQTL TSY+TS CT D D++CCP GGT+ S+K ++G TQTLGDHDP SCM++WDKTR+ RHALVIRY+DCASN+V +TT MAL STPA KLYEMAR ID +IT+ +WL HK+LP PL + PF+N P +L ++ YK L+F+L V+SL F A+N AAVFM++A+F A+ G+Y +P A ++ G SKT + T GL VY ++F
Sbjct: 1 MKGEHAVNVLDLAGMEDAPGLYDTVTQQCRVVFTNEKRLVFTQANHSAEVGLPKMNCLASLLTCFHDRWSRRKWTSYYASIKASEVLQVFVQQTLTTSYQTSTCTFTDFLDVLCCPTGGTLKSEKDINGVTQTLGDHDPGSCMTRWDKTRFMRHALVIRYLDCASNSVQETTLMALASTPASKLYEMARAIDTNITIKANNWLSHKSLPNPLAAQPFRNQTPPQALIKQKPYKILVFILLVVSLIFFAINPTAAVFMLIAVFAAVFGAYSGSKSPVMRARKSAGFGMFGSGSKTTVSTNAFGLAVYLLSF 310 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.774.1 >prot_C-linearis_contig102.774.1 ID=prot_C-linearis_contig102.774.1|Name=mRNA_C-linearis_contig102.774.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=608bp MSDSSESSSTSTSSTIDLISGIHDSSDGHQGGRDIISLKNGRASSDHQQSback to top mRNA from alignment at C-linearis_contig102:193588..200342+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.774.1 ID=mRNA_C-linearis_contig102.774.1|Name=mRNA_C-linearis_contig102.774.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6755bp|location=Sequence derived from alignment at C-linearis_contig102:193588..200342+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:193588..200342+ >mRNA_C-linearis_contig102.774.1 ID=mRNA_C-linearis_contig102.774.1|Name=mRNA_C-linearis_contig102.774.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3648bp|location=Sequence derived from alignment at C-linearis_contig102:193588..200342+ (Chordaria linearis ClinC8C monoicous)back to top |