prot_C-linearis_contig102.773.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig102.773.1
Unique Nameprot_C-linearis_contig102.773.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length568
Homology
BLAST of mRNA_C-linearis_contig102.773.1 vs. uniprot
Match: A0A6H5KA59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA59_9PHAE)

HSP 1 Score: 375 bits (962), Expect = 1.400e-122
Identity = 175/271 (64.58%), Postives = 215/271 (79.34%), Query Frame = 0
Query:  193 LPQMDENSGKQIQLPTGVAITLQNWDVECAEKHIGAIKDSVASHDDLCSFTFMEGEEPVKVLDLAGLENAPGLFEDVSQRCRVAFTNKNRLVFTQAKHSAEVGMPKMRFPMSLCACFQDLWSRRKWSSFYAAINATEVLQVFVQQTLTTSYQTSHCTFNDVFDVLCCPMGGNMYSEKDLIHSTQTLGDHDPGSCMSKWDKTRFMRHALVIRYVDCSSNTVMQTVAMAHPATPASNIFKMAGLIESNITIRTADWLKGKHLPTPLAPAAFDN 463
            +PQ+D +S K +Q+ +GVA  L+ WD+ECA KH+ AIKDSV +HDDL  FT M+GE+ V  LDLAGL +APGLF+D++QRCRV FTNK RL+FTQA HSA VG+PKMR   SL  C  D WSRR W+++ A INA+EVLQVFV Q L+TSYQTS CTFND+ + LCCP GG+MYSEKD+   TQTLGDHDPG CMS+WDKTRFMRHALVIRYVDC+S++V++T AMAHP+ PAS +++MA  IE+NIT+R  DW K K LPT L  + FDN
Sbjct:    1 MPQIDPSSRKMLQMTSGVAADLEEWDIECATKHLDAIKDSVTTHDDLHEFTLMKGEKVVNALDLAGLVDAPGLFDDLTQRCRVVFTNKKRLIFTQANHSAVVGLPKMRCLASLLTCCHDRWSRRTWTAYCATINASEVLQVFVHQELSTSYQTSTCTFNDILEFLCCPTGGSMYSEKDIDGVTQTLGDHDPGDCMSRWDKTRFMRHALVIRYVDCASHSVLETRAMAHPSVPASQLYEMARSIEANITVRMTDWTKSKSLPTALDASRFDN 271          
BLAST of mRNA_C-linearis_contig102.773.1 vs. uniprot
Match: D7FH32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH32_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 2.220e-105
Identity = 174/311 (55.95%), Postives = 210/311 (67.52%), Query Frame = 0
Query:  155 DPVYLVTDTYPYTYKQFDRQEEDRLLGVDISGLVYKKELPQMDENSGKQIQLPTGVAITLQNWDVECAEKHIGAIKDSVASHDDLCSFTFMEGEEPVKVLDLAGLENAPGLFEDVSQRCRVAFTNKNRLVFTQAKHSAEVGMPKMRFPMSLCACFQDLWSRRKWSSFYAAINATEVLQVFVQQTLTTSYQTSHCTFNDVFDVLCCPMGGNMYSEKDLIHSTQTLGDHDPGSCMSKWDKTRFMRHALVIRYVDCSSNTVMQTVAMAHPATPASNIFKMAGLIESNITIRTADWLKGKHLPTPLAPAAFDNEP 465
            D  Y  TD YP+T  QFDR+ E+ LLG   +GL  K  + Q+D +S K +Q+ +GVA  L+ WD+ECA KH+ AIKDSV +HDDL  FTFM+GE+ V  LDLAGLE APG+F++V+QRCRV FTNK RL+FTQ                                          VLQVFVQQ LTTSYQTS CTFND+ D LCCP GG MYSEK++   TQTLGDHDPG CMS+WDKTR MRHALVIRYVDC+SN+V +T AMAHP+ PAS +++MA  IE+NITIRTADW+K K LPT L   +F+N P
Sbjct:   99 DEAYFFTDVYPFTAAQFDREREN-LLGHH-TGLDPK--MAQIDPSSRKMLQMTSGVAADLEKWDIECARKHLDAIKDSVTTHDDLHQFTFMKGEKVVNALDLAGLEEAPGVFDEVTQRCRVVFTNKKRLIFTQ------------------------------------------VLQVFVQQKLTTSYQTSTCTFNDILDFLCCPTGGTMYSEKNIHGVTQTLGDHDPGDCMSRWDKTRHMRHALVIRYVDCASNSVKETTAMAHPSIPASQLYEMARSIEANITIRTADWMKCKSLPTALNAGSFNNSP 363          
BLAST of mRNA_C-linearis_contig102.773.1 vs. uniprot
Match: D7FWP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP8_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 2.110e-97
Identity = 146/220 (66.36%), Postives = 176/220 (80.00%), Query Frame = 0
Query:  245 MEGEEPVKVLDLAGLENAPGLFEDVSQRCRVAFTNKNRLVFTQAKHSAEVGMPKMRFPMSLCACFQDLWSRRKWSSFYAAINATEVLQVFVQQTLTTSYQTSHCTFNDVFDVLCCPMGGNMYSEKDLIHSTQTLGDHDPGSCMSKWDKTRFMRHALVIRYVDCSSNTVMQTVAMAHPATPASNIFKMAGLIESNITIRTADWLKGKHLPTPLAPAAFDNE 464
            M+GE  V VLDLAG+E+APGL++ V+Q+CRV FTN+ RLVFTQA HSAEVG+PKM    SL  CF D WSRRKW+S+YA+I A+EVLQVFVQQTLTTSYQTS CTF D  DVLCCP GG + SEKD+   TQTLGDHDPGSCM++WDKTRFMRHALVIRY+DC+SN+V +T  MA  +TPAS +++MA  I++NITI+  +WL  K LP PLA   F N+
Sbjct:    1 MKGEHAVNVLDLAGMEDAPGLYDTVTQQCRVVFTNEKRLVFTQANHSAEVGLPKMNCLASLLTCFHDRWSRRKWTSYYASIKASEVLQVFVQQTLTTSYQTSTCTFTDFLDVLCCPTGGTLKSEKDINGVTQTLGDHDPGSCMTRWDKTRFMRHALVIRYLDCASNSVQETTLMALASTPASKLYEMARAIDTNITIKANNWLSHKSLPNPLAAQPFRNQ 220          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.773.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KA59_9PHAE1.400e-12264.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH32_ECTSI2.220e-10555.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWP8_ECTSI2.110e-9766.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..479
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 522..539
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 540..544
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 511..521
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 480..510
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 562..567
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 545..561
NoneNo IPR availableTMHMMTMhelixcoord: 527..561
NoneNo IPR availableTMHMMTMhelixcoord: 480..514

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig102contigC-linearis_contig102:183242..192328 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig102.773.1mRNA_C-linearis_contig102.773.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig102 181926..192552 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig102.773.1 ID=prot_C-linearis_contig102.773.1|Name=mRNA_C-linearis_contig102.773.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=568bp
MPGGERRRSSREGHGTDRTPRSTSSSGRDGGRERTGRNIISNDSVRGSHG
GASVQDGGGPNAVGGLFSSRPKDSTGGGVEPGGGDYSRRKTLPDPPPYHD
DDDTAVMVEQQLPVPSSSLSVNSRSTAPASTVPERNGGAHRPAAAGAGPG
VVLEDPVYLVTDTYPYTYKQFDRQEEDRLLGVDISGLVYKKELPQMDENS
GKQIQLPTGVAITLQNWDVECAEKHIGAIKDSVASHDDLCSFTFMEGEEP
VKVLDLAGLENAPGLFEDVSQRCRVAFTNKNRLVFTQAKHSAEVGMPKMR
FPMSLCACFQDLWSRRKWSSFYAAINATEVLQVFVQQTLTTSYQTSHCTF
NDVFDVLCCPMGGNMYSEKDLIHSTQTLGDHDPGSCMSKWDKTRFMRHAL
VIRYVDCSSNTVMQTVAMAHPATPASNIFKMAGLIESNITIRTADWLKGK
HLPTPLAPAAFDNEPPPPPLFQRSSYKSTIFIFFVVALIYFSINTTAAVI
MLLAVMTSFFGSYISSKSRRRVTRRAAGGVMSILLGGAGLPSKTVVSTSG
GGLLVFVVVFLRNPPVP*
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