prot_C-linearis_contig102.771.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig102.771.1
Unique Nameprot_C-linearis_contig102.771.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length445
Homology
BLAST of mRNA_C-linearis_contig102.771.1 vs. uniprot
Match: A0A8J2T2D7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2D7_9STRA)

HSP 1 Score: 137 bits (346), Expect = 7.260e-35
Identity = 72/166 (43.37%), Postives = 100/166 (60.24%), Query Frame = 0
Query:    8 RLTPFMLFYTEHRDAVKSRITKANTACNPADISREICRLWQRLSPQQTKGYCLLSNLYVESLAKHGASGGIQ-----AKSAGKRQKDPRLPKPPVSSFMWFSRHHRAVLRNGNSELSFGEIGKAVGVLWKSADAAARRPFDDLAAEDKARYARELADYKARLIQTQ 168
            RLTPFMLFY E RD V+    K +    P ++S EI R W+ L   Q++ Y +LS  Y E       S  +       K   +R KDPR PK   S++M+FS+HHR +L+  N+ L+FG++GK VG +WK+A    ++PF+DLAA D+ARYAREL +YK   +  Q
Sbjct:    5 RLTPFMLFYCEVRDKVE----KESPKLQPHEVSSEIARRWKALPADQSRAYSVLSATYAEQKKFQKDSPKVPPSPKPVKKRKERYKDPRAPKSATSAYMYFSKHHRTLLKRENASLTFGDLGKTVGAMWKAATPGEKKPFEDLAARDRARYARELEEYKKERLAEQ 166          
BLAST of mRNA_C-linearis_contig102.771.1 vs. uniprot
Match: A0A7S3JW32_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JW32_9STRA)

HSP 1 Score: 133 bits (334), Expect = 4.970e-32
Identity = 74/172 (43.02%), Postives = 106/172 (61.63%), Query Frame = 0
Query:    8 RLTPFMLFYTEHRDAVKSRITKANTACNPADISREICRLWQRLSPQQTKGYCLLSNLYVE-----SLAKH------------GASGGIQAKSAGKRQKDPRLPKPPVSSFMWFSRHHRAVLRNGNSELSFGEIGKAVGVLWKSADAAARRPFDDLAAEDKARYARELADYKA 162
            RLTPFMLF+ EH+D V+    +AN +  P ++S+ I   W+ L+P++ + Y +LS  Y E     SLA                +G   AK  GK +KDP+ PK   S++M+FS+HHR +L+  NS L+FG++GK VG +WK+A    +RPF++LAAEDK RY  EL DYK+
Sbjct:    4 RLTPFMLFFCEHKDVVQ----QANPSAAPHEVSQIIADNWKALAPEKARAYSVLSATYTEQKKANSLATSKXXXXXXXXXXXXETGNGGAKVNGK-EKDPKAPKSATSAYMYFSKHHRMLLKQENSYLTFGDLGKTVGAMWKAATPEEKRPFEELAAEDKNRYVNELHDYKS 170          
BLAST of mRNA_C-linearis_contig102.771.1 vs. uniprot
Match: A0A6H5JGF1_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF1_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 8.590e-23
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 0
Query:  101 MWFSRHHRAVLRNGNSELSFGEIGKAVGVLWKSADAAARRPFDDLAAEDKARYARELADYKARLIQTQGSRERE 174
            MWFSRHHRA+LR  N E+SF +IGKAVGVLWKSA    +RPFDDL+AEDKARYARELA+YKA L+  QGS E +
Sbjct:    1 MWFSRHHRAILRTKNREMSFSDIGKAVGVLWKSATDEQKRPFDDLSAEDKARYARELAEYKAWLLLKQGSTENK 74          
BLAST of mRNA_C-linearis_contig102.771.1 vs. uniprot
Match: A0A4V5NCD6_9BASI (Non-histone chromosomal protein 6 n=1 Tax=Rhodotorula sp. CCFEE 5036 TaxID=1965284 RepID=A0A4V5NCD6_9BASI)

HSP 1 Score: 85.1 bits (209), Expect = 3.070e-16
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 0
Query:   69 LAKHGASGGIQAKSAGKRQKDPRLPKPPVSSFMWFSRHHRAVLRNGNSELSFGEIGKAVGVLWKSADAAARRPFDDLAAEDKARYARELADYKA 162
            + K G +   +A +A K +KDP  PK P+S++M FS+  RA ++    +++FGEIGK +G  WK AD A R+P++D AA +KARY +E A Y A
Sbjct:    1 MPKEGKTRSGKATAAAKPKKDPNAPKRPLSAYMLFSQDKRAEVKEEKPDVTFGEIGKILGAKWKEADEAERKPYEDKAAAEKARYEKEKAAYDA 94          
BLAST of mRNA_C-linearis_contig102.771.1 vs. uniprot
Match: A0A5C5G4Q3_9BASI (High mobility group box domain-containing protein n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5G4Q3_9BASI)

HSP 1 Score: 79.7 bits (195), Expect = 1.490e-14
Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 0
Query:   79 QAKSAGKRQKDPRLPKPPVSSFMWFSRHHRAVLRNGNSELSFGEIGKAVGVLWKSADAAARRPFDDLAAEDKARYARELADYKARLI 165
            +A +A K +KDP  PK P+S++M FS+  R+V++  N +++FGEIGK +GV WK A    ++P+++ A  DK RY +E A Y  RL+
Sbjct:   11 KATAAAKPKKDPNAPKRPLSAYMHFSQDMRSVVKEENPDVTFGEIGKLLGVKWKEATENDKKPYEEKAKADKERYEKEKAAYDVRLL 97          
BLAST of mRNA_C-linearis_contig102.771.1 vs. uniprot
Match: F0YAN0_AURAN (HMG box domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAN0_AURAN)

HSP 1 Score: 78.2 bits (191), Expect = 2.460e-14
Identity = 32/64 (50.00%), Postives = 50/64 (78.12%), Query Frame = 0
Query:   97 VSSFMWFSRHHRAVLRNGNSELSFGEIGKAVGVLWKSADAAARRPFDDLAAEDKARYARELADY 160
             S++M+FS+HHR +L+  NS+L+FG++GK VG +WK+A    ++PF+DLAA D+ RY  EL++Y
Sbjct:   20 TSAYMYFSKHHRLLLKRENSDLTFGDLGKTVGAMWKAATPQEKKPFEDLAAADRTRYNSELSEY 83          
BLAST of mRNA_C-linearis_contig102.771.1 vs. uniprot
Match: A0A1B6F3S3_9HEMI (Uncharacterized protein (Fragment) n=2 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6F3S3_9HEMI)

HSP 1 Score: 85.1 bits (209), Expect = 2.780e-14
Identity = 48/170 (28.24%), Postives = 84/170 (49.41%), Query Frame = 0
Query:    7 GRLTPFMLFYTEHRDAVKSRITKANTACNPADISREICRLWQRLSPQQTKGYCLLSNL----YVESLAKHGASGGIQAKSAGKRQ--KDPRLPKPPVSSFMWFSRHHRAVLRNGNSELSFGEIGKAVGVLWKSADAAARRPFDDLAAEDKARYARELADYKARLIQTQGS 170
            GR+T +  F    R+  K    + N     A+ S++    W+ +S +  K +   + +    Y E +  +    G++ +   KR+  KDP  PK  +S+F WF    R+ ++  N +LS G+I K +G  W   +   R  ++ +A +DKARY +E++DYK    QT  +
Sbjct:  216 GRMTAYAYFVQTCREEHKKMHPEENVVF--AEFSKKCAERWKSMSDEDKKRFQEKAEIDKIRYEEQMKDYTPPDGVEKRGGKKRKQIKDPNAPKKSISAFFWFCHDERSKVKQDNPDLSMGDISKVLGRRWADVNPEIRMKYESMAIQDKARYEKEMSDYKNGQKQTDNA 383          
BLAST of mRNA_C-linearis_contig102.771.1 vs. uniprot
Match: D7G1C1_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C1_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.850e-14
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0
Query:  101 MWFSRHHRAVLRNGNSELSFGEIGKAVGVLWKSADAAARRPFDDLAAE 148
            MWFSRHHRA+LR  N E+SF +IGKAVGVLWKSA    +RPFDDL+AE
Sbjct:    1 MWFSRHHRAILRTKNREMSFSDIGKAVGVLWKSATDEQKRPFDDLSAE 48          
BLAST of mRNA_C-linearis_contig102.771.1 vs. uniprot
Match: F4RQM9_MELLP (HMG box domain-containing protein (Fragment) n=1 Tax=Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) TaxID=747676 RepID=F4RQM9_MELLP)

HSP 1 Score: 77.0 bits (188), Expect = 6.150e-14
Identity = 34/77 (44.16%), Postives = 54/77 (70.13%), Query Frame = 0
Query:   85 KRQKDPRLPKPPVSSFMWFSRHHRAVLRNGNSELSFGEIGKAVGVLWKSADAAARRPFDDLAAEDKARYARELADYK 161
            KR+KDP  PK P+S++M+FS+  R  ++  N E+SFGEIG+ +G+ WKS     ++P++D+A  DK R+  E A+Y+
Sbjct:    5 KREKDPNAPKRPLSAYMFFSQDWRERIKTENPEVSFGEIGRLLGLKWKSLGEEEKKPYEDMACRDKKRHETEKAEYE 81          
BLAST of mRNA_C-linearis_contig102.771.1 vs. uniprot
Match: A0A0L0V1A0_9BASI (HMG box domain-containing protein n=2 Tax=Puccinia striiformis TaxID=27350 RepID=A0A0L0V1A0_9BASI)

HSP 1 Score: 75.5 bits (184), Expect = 4.130e-13
Identity = 33/77 (42.86%), Postives = 54/77 (70.13%), Query Frame = 0
Query:   85 KRQKDPRLPKPPVSSFMWFSRHHRAVLRNGNSELSFGEIGKAVGVLWKSADAAARRPFDDLAAEDKARYARELADYK 161
            K++KDP  PK P+S++M+FS+  R  ++  N E+SFGEIG+ +G+ WK      ++P++D+AA DK R+  E A+Y+
Sbjct:   28 KKEKDPNAPKRPLSAYMFFSQDWRERIKTENPEVSFGEIGRLLGLKWKGLTDEEKKPYEDMAARDKKRHEAEKAEYE 104          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.771.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2T2D7_9STRA7.260e-3543.37Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3JW32_9STRA4.970e-3243.02Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A6H5JGF1_9PHAE8.590e-2371.62HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
A0A4V5NCD6_9BASI3.070e-1644.68Non-histone chromosomal protein 6 n=1 Tax=Rhodotor... [more]
A0A5C5G4Q3_9BASI1.490e-1443.68High mobility group box domain-containing protein ... [more]
F0YAN0_AURAN2.460e-1450.00HMG box domain-containing protein (Fragment) n=1 T... [more]
A0A1B6F3S3_9HEMI2.780e-1428.24Uncharacterized protein (Fragment) n=2 Tax=Cuerna ... [more]
D7G1C1_ECTSI2.850e-1472.92HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
F4RQM9_MELLP6.150e-1444.16HMG box domain-containing protein (Fragment) n=1 T... [more]
A0A0L0V1A0_9BASI4.130e-1342.86HMG box domain-containing protein n=2 Tax=Puccinia... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 4..77
e-value: 2.2
score: 9.0
coord: 92..162
e-value: 2.7E-17
score: 73.5
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 93..161
e-value: 3.0E-16
score: 59.6
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 93..161
score: 16.311
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 77..175
e-value: 2.9E-21
score: 77.5
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 8..72
e-value: 7.7E-5
score: 25.1
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 81..163
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 9..58
NoneNo IPR availablePANTHERPTHR13711:SF302HIGH MOBILITY GROUP PROTEIN DSP1-RELATEDcoord: 75..424
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 75..424

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig102contigC-linearis_contig102:171656..173851 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig102.771.1mRNA_C-linearis_contig102.771.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig102 171596..175428 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig102.771.1 ID=prot_C-linearis_contig102.771.1|Name=mRNA_C-linearis_contig102.771.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=445bp
MDALVVGRLTPFMLFYTEHRDAVKSRITKANTACNPADISREICRLWQRL
SPQQTKGYCLLSNLYVESLAKHGASGGIQAKSAGKRQKDPRLPKPPVSSF
MWFSRHHRAVLRNGNSELSFGEIGKAVGVLWKSADAAARRPFDDLAAEDK
ARYARELADYKARLIQTQGSREREAGELAVAAAAAPAPGAGAAATAPATP
TGIGTGAEAAAAATTLSASMGVTPSPRHTPLAPAAPAPSGIADAAVSSAG
RTLLSSVAGAAERERVVSATAPAAATATAPPSLPPPLPPPPPLSSSFPDR
SSQGSAMRMAMGRSQAKRQRQEETAVAAGGGNGISTASPPGGAIAGGIPA
ATMGGVVVTATAPEPLAASRREHPPHLAQQQQQEEQYHQARQQQHRQQPY
APHYPHAHPQQQPKQQPQQLQQQQPQQLQQQQQQHNITTISWAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR036910HMG_box_dom_sf