mRNA_C-linearis_contig102.765.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig102.765.1
Unique NamemRNA_C-linearis_contig102.765.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig102contigC-linearis_contig102:1353..1939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size257
Cds size255
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig102.765.1prot_C-linearis_contig102.765.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig102 1353..1938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927367.219649-CDS-C-linearis_contig102:1352..14001622927367.219649-CDS-C-linearis_contig102:1352..1400Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 1353..1400 +
1690879656.936333-CDS-C-linearis_contig102:1352..14001690879656.936333-CDS-C-linearis_contig102:1352..1400Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 1353..1400 +
1622927367.2289839-CDS-C-linearis_contig102:1731..19381622927367.2289839-CDS-C-linearis_contig102:1731..1938Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 1732..1938 +
1690879656.9458652-CDS-C-linearis_contig102:1731..19381690879656.9458652-CDS-C-linearis_contig102:1731..1938Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 1732..1938 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927367.2395322-UTR-C-linearis_contig102:1938..19391622927367.2395322-UTR-C-linearis_contig102:1938..1939Chordaria linearis ClinC8C monoicousUTRC-linearis_contig102 1939..1939 +
1690879656.9552014-UTR-C-linearis_contig102:1938..19391690879656.9552014-UTR-C-linearis_contig102:1938..1939Chordaria linearis ClinC8C monoicousUTRC-linearis_contig102 1939..1939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig102.765.1

>prot_C-linearis_contig102.765.1 ID=prot_C-linearis_contig102.765.1|Name=mRNA_C-linearis_contig102.765.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=85bp
HTHHQGQPDRPTLQGQPRRAHARLDQPISLQPSIDPASPSPLVATGQPTE
IHTEHRKSKTPGSRSSLGKPRAGTRRGGGRATNP*
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mRNA from alignment at C-linearis_contig102:1353..1939+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig102.765.1 ID=mRNA_C-linearis_contig102.765.1|Name=mRNA_C-linearis_contig102.765.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=587bp|location=Sequence derived from alignment at C-linearis_contig102:1353..1939+ (Chordaria linearis ClinC8C monoicous)
CACACCCACCACCAGGGGCAGCCCGACAGGCCAACTTTACAGGGGCAGGT
GCGTAGAAAGTGGATGAATACGGGACGGTAATTTTGTTCGTTCGACGGGT
GCATATGGGCCAAGACGCTTTCGGCCAAGAGAAGGAGCGTGCCCGCCCAT
GGATACCATCGCAACTTACTATAGTCGCTTCGTTTCAAACGAACAGAGCG
AAGCAAGGCAGGTGCCAACACAATCATGATCACGGTATTCTCGGGAAGTG
CCATTATTAAACGATGCTTTTGCCAGTATGCCGGAAGGTATGTACAACAA
CGTGATATTGAGGCCAAACCCGCCCGTGCACGCCTTTACTTTTCGTTCGC
GTTCATTGTGTGTGCGCTCATTATCGCAGCCACGTCGTGCCCACGCTCGA
TTGGACCAACCCATTTCTCTGCAGCCATCCATAGACCCTGCCTCGCCGAG
CCCTTTAGTCGCAACGGGCCAGCCAACGGAGATCCACACGGAGCATCGGA
AATCCAAAACCCCAGGCAGCCGCAGTTCCTTGGGGAAGCCTAGGGCTGGT
ACGAGGAGGGGTGGAGGAAGGGCAACGAACCCGTAGA
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Coding sequence (CDS) from alignment at C-linearis_contig102:1353..1939+

>mRNA_C-linearis_contig102.765.1 ID=mRNA_C-linearis_contig102.765.1|Name=mRNA_C-linearis_contig102.765.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at C-linearis_contig102:1353..1939+ (Chordaria linearis ClinC8C monoicous)
CACACCCACCACCAGGGGCAGCCCGACAGGCCAACTTTACAGGGGCAGCA
CACCCACCACCAGGGGCAGCCCGACAGGCCAACTTTACAGGGGCAGCCAC
GTCGTGCCCACGCTCGATTGGACCAACCCATTTCTCTGCAGCCATCCATA
GACCCTGCCTCGCCGAGCCCTTTAGTCGCAACGGGCCAGCCAACGGAGAT
CCACACGGAGCATCGGAAATCCAAAACCCCAGGCAGCCGCAGTTCCTTGG
GGAAGCCTAGGGCTGGTACGAGGAGGGGTGGAGGAAGGGCAACGAACCCG
TAGCCACGTCGTGCCCACGCTCGATTGGACCAACCCATTTCTCTGCAGCC
ATCCATAGACCCTGCCTCGCCGAGCCCTTTAGTCGCAACGGGCCAGCCAA
CGGAGATCCACACGGAGCATCGGAAATCCAAAACCCCAGGCAGCCGCAGT
TCCTTGGGGAAGCCTAGGGCTGGTACGAGGAGGGGTGGAGGAAGGGCAAC
GAACCCGTAG
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