mRNA_C-linearis_contig101.764.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig101.764.1
Unique NamemRNA_C-linearis_contig101.764.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig101.764.1 vs. uniprot
Match: D7FJK5_ECTSI (UBX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJK5_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 1.120e-110
Identity = 217/359 (60.45%), Postives = 253/359 (70.47%), Query Frame = 3 
Query:  267 GIAFMSSLGFDLLGQGAGHGPCFQTRSGAPAEAGLKQALDLLSARRAQLEESEKQALQRADENTATPSAASRSGFNPFATAFSRKSRTQLQERAEHGLANLCQSQARQQQRFSKLEERGVTILLPREHSQRPQETTAPPNREMVEPEEXXXXXXXX--DRELELVAQLWRERMAQDEVERFETSAAKKLRLLRSAKVYPYVLLRVRLPGGVFLQGRFNPDETWETVYQVIGESLSVEAGYGTSDQRLCNNFELFMAPPVRVFPRDAT-SLKASNARAPACILHLRWGSENAQDKSWAEKLEESMSQ-TMGSSVHPRVPYSSRYDIPEAISSKRPQGPHHAKEGAHAAGLESGSEQESAE 1331
            GI+FMS+LGFDL   G G GPCFQ R+GAP E  ++QALDLLSAR     ES + A +      A P  AS  GFNPF TAFSRKSRT+LQERAE GLA+L  SQA++QQRFS LEER VTILLP    Q+P E +A    EM E E+           RELELVAQLWRERM  DEVERFET AAKKLRLLR+AK YPYVL R+RLPGGV+LQ RFN  E+ ET+YQV G+ LS+EA     D +LC+NFELFMAPP RV PRD+T SL+ SN  APAC+LHLRW S  A  ++WA+  EE +S+ TM     PRVPYSSR D+PEAISS+RPQ    A+EGA   G ES S +E+ E
Sbjct:   84 GISFMSALGFDL-NPGTGDGPCFQARTGAPVETDVRQALDLLSARLLHQSESGRPAAE------AEPREAS--GFNPFTTAFSRKSRTRLQERAEQGLAHLSYSQAKRQQRFSTLEERLVTILLP----QQPHEASA----EMEEQEQDGEQGEADAEQRELELVAQLWRERMGNDEVERFETRAAKKLRLLRTAKSYPYVLCRIRLPGGVYLQARFNSKESLETIYQVFGQVLSMEAEV---DGQLCHNFELFMAPPTRVLPRDSTQSLEDSNILAPACVLHLRWKSGEAGLQTWAQNFEERLSRATMDGLALPRVPYSSRLDVPEAISSRRPQELPPAEEGADDDGSESESAEEAPE 422
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BLAST of mRNA_C-linearis_contig101.764.1 vs. uniprot
Match: A0A835YNR5_9STRA (UBX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.240e-12
Identity = 97/362 (26.80%), Postives = 153/362 (42.27%), Query Frame = 3 
Query:  267 GIAFMSSLGFDLLGQGAGHGPCFQTRSGAPAEAGLKQALDLLSARRAQLEESEKQALQRADENT----------------ATPSAASRSGFNPFATAFSRKSRTQLQERAEHGLANLCQSQARQQQRFSKLEERGVTILLPR--EHSQRPQETTAPPNREMVEPEEXXXXXXXXDRELEL---------------VAQLWRERMAQDEVERFETSAAKKLRLLRSAKVYPYVLLRVRLPGGVFLQGRFNPDE-TWETVYQVIGESLSVEAGYGTSDQRLCNNFELFMAPPVRVFPRDATSLKASNARAPACILHLRW--GSENAQDKSWAEKLEESMSQTMGSSVHPRVPYSSRYDIPEAIS 1244
            GI  M +LGF+L  +G G GP F  R  A           LL   +A L+E E  AL +   ++                A   A+++S FNP+A+AFSRK++T++Q+            +     RF K+E+R +T+L P   + +     T+A  N  +   E           E +                V Q  R   A+ + + F ++AA++L  LR+A++  Y L+ VR P GV LQ R+N  E T   V  V+  SL  E  +          F L    P R    D   L+ +   A A ++HL+W  G E     + AE +    ++ +  +         +YD+P  I+
Sbjct:   51 GIGLMMALGFELEDRGDGRGPAFVLRGDADRS--------LLELAQALLQE-ELAALGKGSVSSSXXXXXXXXXXXXXIGAIAGASAQSDFNPYASAFSRKAKTRVQDXXXXXXXXXXXQRRAHLLRFDKMEDRNITVLQPLTGKPATGAAATSADANASLSSSEADAASSGDHSSEYDXXXXXXXXLSAATASAVLQAIRSSRARQQTQPFASAAARRLHALRAARLRAYALVNVRFPDGVQLQARYNAQEDTVGHVVDVVRHSLRREVRHLP--------FRLSALGPTRALLPDQL-LQEAGMVAAANVVHLKWEAGEEAKSSAAMAETMSVLRAELVQGARCLAAARREQYDVPPPIT 394
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJK5_ECTSI1.120e-11060.45UBX domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YNR5_9STRA1.240e-1226.80UBX domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:607392..610098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1810
Cds size1068
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927367.1238773-UTR-C-linearis_contig101:607391..6078551622927367.1238773-UTR-C-linearis_contig101:607391..607855Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 607392..607855 -
1690879656.8607051-UTR-C-linearis_contig101:607391..6078551690879656.8607051-UTR-C-linearis_contig101:607391..607855Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 607392..607855 -
1622927367.1895728-UTR-C-linearis_contig101:609820..6100981622927367.1895728-UTR-C-linearis_contig101:609820..610098Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 609821..610098 -
1690879656.9271588-UTR-C-linearis_contig101:609820..6100981690879656.9271588-UTR-C-linearis_contig101:609820..610098Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 609821..610098 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927367.1369963-CDS-C-linearis_contig101:607855..6079821622927367.1369963-CDS-C-linearis_contig101:607855..607982Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 607856..607982 -
1690879656.8720846-CDS-C-linearis_contig101:607855..6079821690879656.8720846-CDS-C-linearis_contig101:607855..607982Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 607856..607982 -
1622927367.1490982-CDS-C-linearis_contig101:608101..6083881622927367.1490982-CDS-C-linearis_contig101:608101..608388Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 608102..608388 -
1690879656.881436-CDS-C-linearis_contig101:608101..6083881690879656.881436-CDS-C-linearis_contig101:608101..608388Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 608102..608388 -
1622927367.1583025-CDS-C-linearis_contig101:608552..6090041622927367.1583025-CDS-C-linearis_contig101:608552..609004Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 608553..609004 -
1690879656.8906069-CDS-C-linearis_contig101:608552..6090041690879656.8906069-CDS-C-linearis_contig101:608552..609004Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 608553..609004 -
1622927367.1672485-CDS-C-linearis_contig101:609148..6093161622927367.1672485-CDS-C-linearis_contig101:609148..609316Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 609149..609316 -
1690879656.8996165-CDS-C-linearis_contig101:609148..6093161690879656.8996165-CDS-C-linearis_contig101:609148..609316Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 609149..609316 -
1622927367.1774561-CDS-C-linearis_contig101:609786..6098201622927367.1774561-CDS-C-linearis_contig101:609786..609820Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 609787..609820 -
1690879656.9114008-CDS-C-linearis_contig101:609786..6098201690879656.9114008-CDS-C-linearis_contig101:609786..609820Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 609787..609820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.764.1prot_C-linearis_contig101.764.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig101 607856..609820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig101.764.1

>prot_C-linearis_contig101.764.1 ID=prot_C-linearis_contig101.764.1|Name=mRNA_C-linearis_contig101.764.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=356bp
MSSLGFDLLGQGAGHGPCFQTRSGAPAEAGLKQALDLLSARRAQLEESEK
QALQRADENTATPSAASRSGFNPFATAFSRKSRTQLQERAEHGLANLCQS
QARQQQRFSKLEERGVTILLPREHSQRPQETTAPPNREMVEPEEQEEEEE
EEDRELELVAQLWRERMAQDEVERFETSAAKKLRLLRSAKVYPYVLLRVR
LPGGVFLQGRFNPDETWETVYQVIGESLSVEAGYGTSDQRLCNNFELFMA
PPVRVFPRDATSLKASNARAPACILHLRWGSENAQDKSWAEKLEESMSQT
MGSSVHPRVPYSSRYDIPEAISSKRPQGPHHAKEGAHAAGLESGSEQESA
ESPTL*
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mRNA from alignment at C-linearis_contig101:607392..610098-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.764.1 ID=mRNA_C-linearis_contig101.764.1|Name=mRNA_C-linearis_contig101.764.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2707bp|location=Sequence derived from alignment at C-linearis_contig101:607392..610098- (Chordaria linearis ClinC8C monoicous)
CTCTCACCATCCCTGGTAACGATGATACGGGCATACTTGTACGCCCTACT
GCTTCATGTTGGGGTCGTGGTGGCTTCCAGCAGTTTCCAGGCGGCGTTAG
ATGAAATCGTGGCATTCCACAGGCAAGACACCGCAGCGCTTGCTCGCACC
CTCGACAGCTTGCGCACAATTGCCACTCGATTGCAGTCCGAGCCGGACAA
CCCCAGTTACCGCAACATACGACTTCTGAACAAGACCTTCTGGGAGAGAG
TCGGTAGCGTCGACGGGGCATCGCATTCATGTCCTCCTTGGGGTTCGACT
TACTTGGGCAAGGTGAGGTGTTTCTCCGGTGGGTGACAGACCTGGTCACA
CCGGTACGTGAGTCATGAGTACGTCGGGCGCATCGTAGGCTGAGGTGCTC
GTTTTATTTGCTGGAAGTTCGCCATTTTTGTTTAACAAGCAGTTCTCCCT
TCATGTTGGGAAACTGATTCGATGCTGAATAGAAACACAAACATAAACAT
CCGTATACACGATAACTGGTGTAGTCTATGCATGATAGGATAGACGACAA
AGCGGTCTACCCGTAGGATACGTTGTACTCCGAGCGAGACAGAGAACTAT
AGTTACAATGTGTTCACCCCGCGTAGCTAAGTGGCCCGCTGTATGATACG
GGTTCCGTGCGTTCCTCTCAGCTCCTCGTGTTCACTTTGTACAGTAAAGA
CGAGGAATTTTCCACTCTGTTGTATGACGGCAATGGCCTTCACTGCACCC
GGGGATGTTATGGCAAATATTCTTTCACGCAGGCGCAGGCCACGGCCCGT
GTTTTCAGACTCGCTCAGGCGCCCCAGCTGAAGCCGGCTTAAAACAGGCT
TTGGACCTCCTCTCTGCGCGACGTGCACAGCTTGAGGAGTCTGAGAAGCA
AGCTCTCCAGAGGGCCGACGAAAACACGGCAACACCTTCTGCTGCATCTC
GTGAGTTGATCGAGTTCACGCCCCTCGTACAAAGTGATCCGGAAGCATCG
TGGTAGACTATTCAGCGAGCCCAACATAGTAAAATCCGCTAGCGCCAACC
ACCAAAGTGTCGTACCCACCGTAATTGAATAATAATAATGGCAGGCTCGG
GTTTCAATCCCTTTGCGACCGCGTTCTCGCGAAAGTCTAGAACGCAATTG
CAAGAACGCGCAGAGCACGGGCTGGCGAATCTTTGTCAGAGTCAGGCGAG
GCAGCAGCAGCGCTTCTCGAAGCTTGAAGAACGCGGTGTCACAATCTTAC
TGCCTCGAGAGCATTCGCAACGGCCGCAAGAAACAACGGCTCCACCCAAT
CGGGAGATGGTGGAGCCCGAGGAGCAGGAGGAGGAGGAGGAGGAAGAAGA
TCGCGAACTTGAGCTCGTAGCGCAGCTGTGGCGAGAAAGGATGGCCCAAG
ATGAGGTGGAGCGGTTCGAAACCAGTGCAGCAAAAAAGCTGAGATTGTTG
AGGTCTGCCAAGGTGTATCCGTACGTTTTGCTGCGGGTACGGCTACCAGG
AGGAGTGTTCCTTCAGGGCCGCTTCAATCCAGACGAAACATGGGAGGTGA
GGATTGGGGCATCAGGGTGCGCAATCTTCGACAAAGCGGACACGGCCTAC
CAACTGTACCTTTTTAGCGGACTTTGAACGGCAGTAAATCTTGTAGCCTC
AATATCATGCACACTACGAGCACACCGTGGTTTCTTGGTCCCGCATCATT
CCGGTTGCAGACTGTGTATCAGGTGATTGGAGAAAGCCTTTCGGTGGAGG
CTGGCTACGGTACTTCTGATCAACGGCTATGCAACAACTTCGAGCTGTTC
ATGGCGCCACCAGTGCGAGTGTTTCCACGAGACGCTACCAGCCTCAAAGC
ATCCAACGCCCGTGCTCCAGCGTGCATTCTGCATCTACGATGGGGGAGCG
AAAACGCTCAGGATAAAAGTTGGGCAGAGAAATTGGAAGAGAGCATGTCG
CAGACGATGGGCAGCTCGGTCCACCCAAGGGTGCCGTACTCGTCAAGGTA
CGCACGATCTCTTTGCCTCATGACGCTAACGCCACCCCGCCATCCGAGTA
TTGCGGCTTTGGAGCACTACTGTACGAGCTAACTCGTCTTGATTGCGCCT
CTGATCACTTTCACAGATACGACATCCCTGAAGCCATTTCTTCCAAACGA
CCCCAAGGGCCTCATCATGCTAAAGAGGGCGCTCATGCTGCCGGATTGGA
ATCAGGATCGGAACAGGAATCGGCAGAATCACCAACGCTGTAGCCGTTTA
GCTAAAGTATCTTCATCGGGTTGCAAAGACTAATTACAACAACAGTAGGT
GCACGATCAAAACAACGAAGTTTTTTTTGCCGTGCGGGCATCTTGACTCC
ATACCGCCGGCGACTAGTAGAAAACTTCTTCCCGCATGGCAAGTGATGCG
AAAGAAGAACCGTGCATTGGGTGAATGAACTAACTGCAGTTGCCGTTTTC
GTCTTTCTTTGCGCTGATGTCACACCGCCTGCAACTTTTTCAAAAATACA
TAAAAACACGCCCGGTGTGATTCTGTCGATTTTTTTTTCTAGACTCTCTG
AGGGAGGGGGGTAGTGTGGTGTGCGGGATAACTTTCCTTGTGTGCGCCGT
TTTGGGCAAGCACCGCAGAAGATGGATGGGGGACTCAGGGGGAGGAACCT
TCTGTGTGACCACGGTTCAGATGTTCTGGCAAGATGCCTCGCGTGGCAAG
GCGCCCC
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Coding sequence (CDS) from alignment at C-linearis_contig101:607392..610098-

>mRNA_C-linearis_contig101.764.1 ID=mRNA_C-linearis_contig101.764.1|Name=mRNA_C-linearis_contig101.764.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2136bp|location=Sequence derived from alignment at C-linearis_contig101:607392..610098- (Chordaria linearis ClinC8C monoicous)
ATGTCCTCCTTGGGGTTCGACTTACTTGGGCAAGATGTCCTCCTTGGGGT
TCGACTTACTTGGGCAAGGCGCAGGCCACGGCCCGTGTTTTCAGACTCGC
TCAGGCGCCCCAGCTGAAGCCGGCTTAAAACAGGCTTTGGACCTCCTCTC
TGCGCGACGTGCACAGCTTGAGGAGTCTGAGAAGCAAGCTCTCCAGAGGG
CCGACGAAAACACGGCAACACCTTCTGCTGCATCTCGCGCAGGCCACGGC
CCGTGTTTTCAGACTCGCTCAGGCGCCCCAGCTGAAGCCGGCTTAAAACA
GGCTTTGGACCTCCTCTCTGCGCGACGTGCACAGCTTGAGGAGTCTGAGA
AGCAAGCTCTCCAGAGGGCCGACGAAAACACGGCAACACCTTCTGCTGCA
TCTCGCTCGGGTTTCAATCCCTTTGCGACCGCGTTCTCGCGAAAGTCTAG
AACGCAATTGCAAGAACGCGCAGAGCACGGGCTGGCGAATCTTTGTCAGA
GTCAGGCGAGGCAGCAGCAGCGCTTCTCGAAGCTTGAAGAACGCGGTGTC
ACAATCTTACTGCCTCGAGAGCATTCGCAACGGCCGCAAGAAACAACGGC
TCCACCCAATCGGGAGATGGTGGAGCCCGAGGAGCAGGAGGAGGAGGAGG
AGGAAGAAGATCGCGAACTTGAGCTCGTAGCGCAGCTGTGGCGAGAAAGG
ATGGCCCAAGATGAGGTGGAGCGGTTCGAAACCAGTGCAGCAAAAAAGCT
GAGATTGTTGAGGTCTGCCAAGGTGTATCCGTACGTTTTGCTGCGGGTAC
GGCTACCAGGAGGAGTGTTCCTTCAGGGCCGCTTCAATCCAGACGAAACA
TGGGAGGCTCGGGTTTCAATCCCTTTGCGACCGCGTTCTCGCGAAAGTCT
AGAACGCAATTGCAAGAACGCGCAGAGCACGGGCTGGCGAATCTTTGTCA
GAGTCAGGCGAGGCAGCAGCAGCGCTTCTCGAAGCTTGAAGAACGCGGTG
TCACAATCTTACTGCCTCGAGAGCATTCGCAACGGCCGCAAGAAACAACG
GCTCCACCCAATCGGGAGATGGTGGAGCCCGAGGAGCAGGAGGAGGAGGA
GGAGGAAGAAGATCGCGAACTTGAGCTCGTAGCGCAGCTGTGGCGAGAAA
GGATGGCCCAAGATGAGGTGGAGCGGTTCGAAACCAGTGCAGCAAAAAAG
CTGAGATTGTTGAGGTCTGCCAAGGTGTATCCGTACGTTTTGCTGCGGGT
ACGGCTACCAGGAGGAGTGTTCCTTCAGGGCCGCTTCAATCCAGACGAAA
CATGGGAGACTGTGTATCAGGTGATTGGAGAAAGCCTTTCGGTGGAGGCT
GGCTACGGTACTTCTGATCAACGGCTATGCAACAACTTCGAGCTGTTCAT
GGCGCCACCAGTGCGAGTGTTTCCACGAGACGCTACCAGCCTCAAAGCAT
CCAACGCCCGTGCTCCAGCGTGCATTCTGCATCTACGATGGGGGAGCGAA
AACGCTCAGGATAAAAGTTGGGCAGAGAAATTGGAAGAGAGCATGTCGCA
GACGATGGGCAGCTCGGTCCACCCAAGGGTGCCGTACTCGTCAAGACTGT
GTATCAGGTGATTGGAGAAAGCCTTTCGGTGGAGGCTGGCTACGGTACTT
CTGATCAACGGCTATGCAACAACTTCGAGCTGTTCATGGCGCCACCAGTG
CGAGTGTTTCCACGAGACGCTACCAGCCTCAAAGCATCCAACGCCCGTGC
TCCAGCGTGCATTCTGCATCTACGATGGGGGAGCGAAAACGCTCAGGATA
AAAGTTGGGCAGAGAAATTGGAAGAGAGCATGTCGCAGACGATGGGCAGC
TCGGTCCACCCAAGGGTGCCGTACTCGTCAAGATACGACATCCCTGAAGC
CATTTCTTCCAAACGACCCCAAGGGCCTCATCATGCTAAAGAGGGCGCTC
ATGCTGCCGGATTGGAATCAGGATCGGAACAGGAATCGGCAGAATCACCA
ACGCTGTAGATACGACATCCCTGAAGCCATTTCTTCCAAACGACCCCAAG
GGCCTCATCATGCTAAAGAGGGCGCTCATGCTGCCGGATTGGAATCAGGA
TCGGAACAGGAATCGGCAGAATCACCAACGCTGTAG
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