mRNA_C-linearis_contig101.754.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig101.754.1
Unique NamemRNA_C-linearis_contig101.754.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match: A0A6H5KGZ7_9PHAE (MULE domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGZ7_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.630e-27
Identity = 57/81 (70.37%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   62 NRLGDGRAEEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQ 304
            NR+     E++  AL YH + IQDNTFNTNQYKY LAL V VDKEN+T IAMQALL+NERTEDF FLFR FRELI GAQP+
Sbjct:   18 NRIAWALDEQKTNALRYHSLIIQDNTFNTNQYKYHLALKVAVDKENYTHIAMQALLANERTEDFEFLFREFRELIEGAQPE 98          
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match: A0A6H5KJW1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW1_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.210e-27
Identity = 54/73 (73.97%), Postives = 61/73 (83.56%), Query Frame = 2
Query:   86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQ 304
            E++  AL Y  + IQDNTFNTN+YKY LALIVVVDKEN+TQIAMQALL+NERTEDF FLFR FREL  G QP+
Sbjct:  124 EQQGNALRYSSIIIQDNTFNTNEYKYHLALIVVVDKENYTQIAMQALLANERTEDFKFLFRVFRELCEGVQPE 196          
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match: A0A6H5KQ14_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ14_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.350e-26
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 2
Query:   86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQV 307
            E+E  A  YH V +QDNTFNTN YK+FLALIVVVD EN+TQIAMQALLSNER+EDF+FL  TF+EL GG  PQV
Sbjct:   20 EQEQNARRYHRVILQDNTFNTNVYKFFLALIVVVDMENYTQIAMQALLSNERSEDFIFLMETFKELCGGLMPQV 93          
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match: A0A6H5JYV9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV9_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 4.800e-26
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 2
Query:   86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQV 307
            E++  AL Y  + IQDNTFNTN+YKY LALIVVVD EN+TQIAMQALL+NERTEDF FLFR FREL  G QP+V
Sbjct:  124 EQQGNALRYSSIIIQDNTFNTNEYKYHLALIVVVDNENYTQIAMQALLANERTEDFKFLFRVFRELCEGVQPEV 197          
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match: A0A6H5K030_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K030_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.590e-24
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 2
Query:   86 EEECTALSYHMVSIQDNTFNTNQ--YKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQV 307
            E++  AL Y  + IQDNTFNTN+  YKY LALIVVVDKEN+TQIAMQALL+NERTED+ FLFR FREL  G QP+V
Sbjct:   53 EQKRNALRYSRIIIQDNTFNTNERVYKYHLALIVVVDKENYTQIAMQALLANERTEDYKFLFRVFRELCQGMQPEV 128          
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match: A0A6H5JXK5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK5_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 7.000e-24
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 2
Query:   86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQV 307
            +++  A+ YH + IQDNTFNTN YK+FLALIVVVDKEN TQIAMQALL+NER+E F F+F +F+EL GG  P V
Sbjct:  333 DQKVLAMRYHKIIIQDNTFNTNVYKFFLALIVVVDKENHTQIAMQALLANERSESFEFIFESFKELCGGGSPGV 406          
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match: A0A6H5KFX3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX3_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.750e-23
Identity = 51/73 (69.86%), Postives = 58/73 (79.45%), Query Frame = 2
Query:   86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQ 304
            E++  AL Y  + IQDNTFNTN+YKY LALIVVVD EN+TQIAMQALL+NERTEDF FLFR F  L  G QP+
Sbjct:   28 EQQRNALRYSSIIIQDNTFNTNEYKYHLALIVVVDNENYTQIAMQALLANERTEDFKFLFRVFGGLCEGLQPE 100          
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match: A0A6H5JG50_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG50_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 4.340e-22
Identity = 56/104 (53.85%), Postives = 64/104 (61.54%), Query Frame = 2
Query:   86 EEECTALSYHMVSIQDNTFNTN------------------------------QYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQV 307
            E++  AL Y+ + IQDNTF TN                              +YKY+LALIVVVDKEN+TQIAMQALLSNERTEDF FLFR FREL  GAQP+V
Sbjct:  130 EQKKNALRYYPIIIQDNTFGTNAPLVYSGKLLIPRVSDCVSDLNSACSWYSTRYKYWLALIVVVDKENYTQIAMQALLSNERTEDFRFLFRVFRELCEGAQPEV 233          
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match: D7G8C7_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C7_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.180e-20
Identity = 45/74 (60.81%), Postives = 59/74 (79.73%), Query Frame = 2
Query:   86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQV 307
            +++  A+ YH V +QDNTFNTN YK+ LALIVVVDKEN +QIAMQALLS+ER+E F F+F +F++L  G  P+V
Sbjct:   57 QQKYNAVRYHSVIVQDNTFNTNIYKFHLALIVVVDKENHSQIAMQALLSDERSESFEFVFESFKQLCEGGTPEV 130          
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Match: A0A6H5K2E4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E4_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.790e-20
Identity = 42/73 (57.53%), Postives = 58/73 (79.45%), Query Frame = 2
Query:   86 EEECTALSYHMVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLFRTFRELIGGAQPQ 304
            +++  A+ YH V +QDNTFNTN YK+ LAL+VV+DKEN +QIAMQALLS+ER+E F F+F +F++L  G  P+
Sbjct:  111 QQKYNAVRYHFVIVQDNTFNTNIYKFHLALMVVLDKENHSQIAMQALLSDERSESFEFVFESFKQLCEGGTPE 183          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5KGZ7_9PHAE1.630e-2770.37MULE domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6H5KJW1_9PHAE3.210e-2773.97MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KQ14_9PHAE1.350e-2672.97SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JYV9_9PHAE4.800e-2672.97SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K030_9PHAE2.590e-2471.05MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JXK5_9PHAE7.000e-2466.22SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KFX3_9PHAE1.750e-2369.86SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JG50_9PHAE4.340e-2253.85MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G8C7_ECTSI1.180e-2060.81Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5K2E4_9PHAE2.790e-2057.53MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:502627..503101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size308
Cds size192
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.754.1prot_C-linearis_contig101.754.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig101 502627..502986 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927365.5263271-CDS-C-linearis_contig101:502626..5027801622927365.5263271-CDS-C-linearis_contig101:502626..502780Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 502627..502780 -
1690879655.5306256-CDS-C-linearis_contig101:502626..5027801690879655.5306256-CDS-C-linearis_contig101:502626..502780Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 502627..502780 -
1622927365.536178-CDS-C-linearis_contig101:502948..5029861622927365.536178-CDS-C-linearis_contig101:502948..502986Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 502949..502986 -
1690879655.5397215-CDS-C-linearis_contig101:502948..5029861690879655.5397215-CDS-C-linearis_contig101:502948..502986Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 502949..502986 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927365.5478282-UTR-C-linearis_contig101:502986..5031011622927365.5478282-UTR-C-linearis_contig101:502986..503101Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 502987..503101 -
1690879655.5483096-UTR-C-linearis_contig101:502986..5031011690879655.5483096-UTR-C-linearis_contig101:502986..503101Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 502987..503101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig101.754.1

>prot_C-linearis_contig101.754.1 ID=prot_C-linearis_contig101.754.1|Name=mRNA_C-linearis_contig101.754.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=64bp
MVSIQDNTFNTNQYKYFLALIVVVDKENFTQIAMQALLSNERTEDFVFLF
RTFRELIGGAQPQV
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mRNA from alignment at C-linearis_contig101:502627..503101-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.754.1 ID=mRNA_C-linearis_contig101.754.1|Name=mRNA_C-linearis_contig101.754.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=475bp|location=Sequence derived from alignment at C-linearis_contig101:502627..503101- (Chordaria linearis ClinC8C monoicous)
AGCTTCAGCTGGAGGGTTGTTGGATGAGGTTCAAGTTGGACAAGGCCGGA CGGGTTAAGCTAATCGCTTGGGCGACGGACGAGCAGAGGAAGAATGCACT GCGCTATCATACCACATGGTCAGCATCCAGGACAACACGTTCAACACGAA CCAGTGAGCGGAAATTTTTGCGTTCTGTGTCCCGGGACCTCTGTGTGACC CGGTGTGATTTGAGCATTCCCGTACAAAATGATACTTTCGCTCGTCCTCC GTTTTCCGAATGTCTTCTCATAACATGCGTGTCCGTTGTGTGCTCAACTT GTTCGTGATCCTCCAACAAAGGTACAAGTACTTTCTGGCACTGATAGTCG TTGTGGACAAGGAAAACTTCACCCAGATCGCGATGCAGGCCCTGCTTTCA AACGAGCGGACGGAGGACTTTGTTTTCCTCTTTCGAACCTTTAGAGAACT GATCGGGGGAGCGCAGCCGCAGGTG
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Coding sequence (CDS) from alignment at C-linearis_contig101:502627..503101-

>mRNA_C-linearis_contig101.754.1 ID=mRNA_C-linearis_contig101.754.1|Name=mRNA_C-linearis_contig101.754.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at C-linearis_contig101:502627..503101- (Chordaria linearis ClinC8C monoicous)
ATGGTCAGCATCCAGGACAACACGTTCAACACGAACCAATGGTCAGCATC
CAGGACAACACGTTCAACACGAACCAGTACAAGTACTTTCTGGCACTGAT
AGTCGTTGTGGACAAGGAAAACTTCACCCAGATCGCGATGCAGGCCCTGC
TTTCAAACGAGCGGACGGAGGACTTTGTTTTCCTCTTTCGAACCTTTAGA
GAACTGATCGGGGGAGCGCAGCCGCAGGTGGTACAAGTACTTTCTGGCAC
TGATAGTCGTTGTGGACAAGGAAAACTTCACCCAGATCGCGATGCAGGCC
CTGCTTTCAAACGAGCGGACGGAGGACTTTGTTTTCCTCTTTCGAACCTT
TAGAGAACTGATCGGGGGAGCGCAGCCGCAGGTG
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