prot_C-linearis_contig101.750.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig101.750.1
Unique Nameprot_C-linearis_contig101.750.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length323
Homology
BLAST of mRNA_C-linearis_contig101.750.1 vs. uniprot
Match: A0A6H5J9P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9P1_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.110e-12
Identity = 114/405 (28.15%), Postives = 170/405 (41.98%), Query Frame = 0
Query:    2 EADCWWVRSQEN-----DLLKRGSRPNAAQHRSCIKPGDERIHPPWLHPHRG------------EVQSSGSEHGGAALNQ-----------SSPLARPPRDISPRQLPVGQLAALELMND---TSQKEHQNLLVPGAG-HD-------AESSRQDEPFRSKYEGESDENAYLDARAHTLLEHCRQLLAPSSTPS-DQV-----STPASTG------------LEERARTLLTDCKHS---------------SGRPCIPEAQSKVAKASI--GEDSKVSC-----GGC----FGERENTHRFQQEQG-NVRHAANVSLVRET--EKYSALMTSLLHDVHRAGDRSKHDRSLFRSVLVRNGAEERA------------DWLRDDPALSALLRRFGKIEAEIEKRHS 308
            E D WW RSQEN     + ++  SR N  + RS     +     P+L    G            + +S   E+    L+Q           +SP  R   D  P QL      A EL+ND   T++ E  +  V   G HD       AE+   ++   ++ +G  DE   LDARA TLL+ CRQ+LAPSST + D+V     S   S G            LE+RA  LL  C+                 S +P   +AQ  + +     G+ +KV       GG      GERE  +   Q +G   R +++V  +R+   +    + +++    H     S  +R+ +   L  +G +ER             DW R DP LSALLRR  ++EAE+++R +
Sbjct:   36 EGDFWWTRSQENFGEATEAVR--SRCNDIEDRSSTHVAENAKPLPFLESGEGKSPQPSIGSPPKQSESDDCENERPTLDQIAVLEGSQPPLNSPPGRRAHDELPTQLSKRGSEAPELVNDRLATAEAEAADTNVHETGVHDMVPVGLHAENLVLNKSINAR-DGGGDELQTLDARARTLLQECRQVLAPSSTITLDEVASFTYSASQSNGPIIAALDDLPEELEKRAWMLLNHCEEPPLLPAYNEEVLAVPCSSKPPAIDAQGDLVRLGKYDGKTAKVLLRRNPPGGAVARPLGEREGAYHLDQGRGCQSRCSSDVRNLRDVNIDSIGRVCSTIAESRH-----SNRERTWYSPALDSSGVQERMSSMTVATTPGEEDWFRQDPVLSALLRRHDEVEAELKRRRA 432          
BLAST of mRNA_C-linearis_contig101.750.1 vs. uniprot
Match: D8LE30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE30_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.090e-6
Identity = 81/256 (31.64%), Postives = 103/256 (40.23%), Query Frame = 0
Query:    2 EADCWWVRSQENDLLKRGSRPNAAQHR-------------SCIKPGDERIHPPWLHPHRG------------EVQSSGSEHGGAALNQ-----------SSPLARPPRDISPRQLPVGQLAALELMND---TSQKEHQNLLVP------GAGHDAESSRQDEPFRSKYEGESDENAYLDARAHTLLEHCRQLLAPSSTPS-DQV-----STPASTG------------LEERARTLLTDCKHSSGRPCIPEAQSKV 194
            E D WW RSQE    K G    A + R               +KP      PP+L   +G            + +S   E+    L+Q           +SP  RP  D  P QL      A EL+ND   T++ E  +  V         G DAES  QD+   +   G  DE   LD RA TLLE CRQ+LAPSST + DQV     S   S G            LE+RA  LL +C+     P +P    +V
Sbjct:   36 EGDFWWTRSQE----KFGEATEAVRSRCNDIEDLPSTHVAEIVKP------PPYLESGKGKSPQPSIGSPSKQSESDDCENKRRMLDQLAVLEGSQTPLNSPPGRPAHDELPTQLSTSGSEAPELVNDRLATAEVEAADTNVDETGVHVSIGLDAESLVQDKSINACDRG-GDELETLDVRARTLLEECRQVLAPSSTITLDQVRSFTSSASQSNGPIIAALDNLPEELEKRAWMLLNNCEEP---PLLPTYNEEV 277          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.750.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9P1_9PHAE1.110e-1228.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE30_ECTSI1.090e-631.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:480315..484518 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.750.1mRNA_C-linearis_contig101.750.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig101 480274..484684 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig101.750.1 ID=prot_C-linearis_contig101.750.1|Name=mRNA_C-linearis_contig101.750.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=323bp
MEADCWWVRSQENDLLKRGSRPNAAQHRSCIKPGDERIHPPWLHPHRGEV
QSSGSEHGGAALNQSSPLARPPRDISPRQLPVGQLAALELMNDTSQKEHQ
NLLVPGAGHDAESSRQDEPFRSKYEGESDENAYLDARAHTLLEHCRQLLA
PSSTPSDQVSTPASTGLEERARTLLTDCKHSSGRPCIPEAQSKVAKASIG
EDSKVSCGGCFGERENTHRFQQEQGNVRHAANVSLVRETEKYSALMTSLL
HDVHRAGDRSKHDRSLFRSVLVRNGAEERADWLRDDPALSALLRRFGKIE
AEIEKRHSAKLKWRRPGVDLQK*
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