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Homology
BLAST of mRNA_C-linearis_contig101.750.1 vs. uniprot
Match: D8LE30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE30_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 1.560e-14 Identity = 124/436 (28.44%), Postives = 174/436 (39.91%), Query Frame = 3
Query: 3 REDEPNSRDAR-----KAMEADCWWVRSQENDLLKRGSRPNAAQHR-------------SCIKPGDERIHPPWLHPHRG------------EVQSSGSEHGGAALNQ-----------SSPLARPPRDISPRQLPVGQLAALELMND---TSQKEHQNLLVP------GAGHDAESSRQDEPFRSKYEGESDENAYLDARAHTLLEHCRQLLAPSSTPS-DQV-----STPASTG------------LEERARTLLTDCKHS---------------SGRPCIPEAQSKVAKASIGEDSKVSC---------GGC----FGERENTHRFQQEQG-------NVRHAANVSLVRETEKYSALMTSLLHDVHRAGDRSKHDRSLFRSVLVRNGAEERA------------DWLRDDPALSALLRRFGKIEAEIEKRHS 965
R+ EP R+ R +A E D WW RSQE K G A + R +KP PP+L +G + +S E+ L+Q +SP RP D P QL A EL+ND T++ E + V G DAES QD+ + G DE LD RA TLLE CRQ+LAPSST + DQV S S G LE+RA LL +C+ S +P + Q + + +GED + GG FGERE + QE+G +V + +V++ + + S S ++R+ + L +G +ER DW R DP LSALLRR ++E E+++R +
Sbjct: 17 RQSEPLPREERXXXXXEATEGDFWWTRSQE----KFGEATEAVRSRCNDIEDLPSTHVAEIVKP------PPYLESGKGKSPQPSIGSPSKQSESDDCENKRRMLDQLAVLEGSQTPLNSPPGRPAHDELPTQLSTSGSEAPELVNDRLATAEVEAADTNVDETGVHVSIGLDAESLVQDKSINACDRG-GDELETLDVRARTLLEECRQVLAPSSTITLDQVRSFTSSASQSNGPIIAALDNLPEELEKRAWMLLNNCEEPPLLPTYNEEVLAVPCSSKPPALDTQGDLVR--LGEDDGKTAKVLLRRNPPGGVVARPFGEREGAYHLDQERGWQPTCSSDVGNLGDVNVDSIGRVFPTITDSRY---------SNNERTWYSPALDSSGVQERMSSMTLATTPGEEDWFRRDPVLSALLRRHDEVETELKRRRA 430
BLAST of mRNA_C-linearis_contig101.750.1 vs. uniprot
Match: A0A6H5J9P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9P1_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 5.390e-13 Identity = 120/424 (28.30%), Postives = 179/424 (42.22%), Query Frame = 3
Query: 3 REDEPNSRDARK-----AMEADCWWVRSQEN-----DLLKRGSRPNAAQHRSCIKPGDERIHPPWLHPHRG------------EVQSSGSEHGGAALNQ-----------SSPLARPPRDISPRQLPVGQLAALELMND---TSQKEHQNLLVPGAG-HD-------AESSRQDEPFRSKYEGESDENAYLDARAHTLLEHCRQLLAPSSTPS-DQV-----STPASTG------------LEERARTLLTDCKHS---------------SGRPCIPEAQSKVAKASI--GEDSKVSC-----GGC----FGERENTHRFQQEQG-NVRHAANVSLVRET--EKYSALMTSLLHDVHRAGDRSKHDRSLFRSVLVRNGAEERA------------DWLRDDPALSALLRRFGKIEAEIEKRHS 965
R+ EP R+ R+ A E D WW RSQEN + ++ SR N + RS + P+L G + +S E+ L+Q +SP R D P QL A EL+ND T++ E + V G HD AE+ ++ ++ +G DE LDARA TLL+ CRQ+LAPSST + D+V S S G LE+RA LL C+ S +P +AQ + + G+ +KV GG GERE + Q +G R +++V +R+ + + +++ H S +R+ + L +G +ER DW R DP LSALLRR ++EAE+++R +
Sbjct: 17 RQSEPLPREERRRXRQEAKEGDFWWTRSQENFGEATEAVR--SRCNDIEDRSSTHVAENAKPLPFLESGEGKSPQPSIGSPPKQSESDDCENERPTLDQIAVLEGSQPPLNSPPGRRAHDELPTQLSKRGSEAPELVNDRLATAEAEAADTNVHETGVHDMVPVGLHAENLVLNKSINAR-DGGGDELQTLDARARTLLQECRQVLAPSSTITLDEVASFTYSASQSNGPIIAALDDLPEELEKRAWMLLNHCEEPPLLPAYNEEVLAVPCSSKPPAIDAQGDLVRLGKYDGKTAKVLLRRNPPGGAVARPLGEREGAYHLDQGRGCQSRCSSDVRNLRDVNIDSIGRVCSTIAESRH-----SNRERTWYSPALDSSGVQERMSSMTVATTPGEEDWFRQDPVLSALLRRHDEVEAELKRRRA 432
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1176 |
| Cds size | 969 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927365.2196527-UTR-C-linearis_contig101:480273..480314 | 1622927365.2196527-UTR-C-linearis_contig101:480273..480314 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig101 480274..480314 + |
| 1690879655.4282982-UTR-C-linearis_contig101:480273..480314 | 1690879655.4282982-UTR-C-linearis_contig101:480273..480314 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig101 480274..480314 + |
| 1622927365.2632654-UTR-C-linearis_contig101:484518..484684 | 1622927365.2632654-UTR-C-linearis_contig101:484518..484684 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig101 484519..484684 + |
| 1690879655.4627688-UTR-C-linearis_contig101:484518..484684 | 1690879655.4627688-UTR-C-linearis_contig101:484518..484684 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig101 484519..484684 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927365.231615-CDS-C-linearis_contig101:480314..480331 | 1622927365.231615-CDS-C-linearis_contig101:480314..480331 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig101 480315..480331 + |
| 1690879655.4375193-CDS-C-linearis_contig101:480314..480331 | 1690879655.4375193-CDS-C-linearis_contig101:480314..480331 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig101 480315..480331 + |
| 1622927365.2434206-CDS-C-linearis_contig101:483196..483653 | 1622927365.2434206-CDS-C-linearis_contig101:483196..483653 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig101 483197..483653 + |
| 1690879655.4460218-CDS-C-linearis_contig101:483196..483653 | 1690879655.4460218-CDS-C-linearis_contig101:483196..483653 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig101 483197..483653 + |
| 1622927365.252184-CDS-C-linearis_contig101:484023..484518 | 1622927365.252184-CDS-C-linearis_contig101:484023..484518 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig101 484024..484518 + |
| 1690879655.4543908-CDS-C-linearis_contig101:484023..484518 | 1690879655.4543908-CDS-C-linearis_contig101:484023..484518 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig101 484024..484518 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.750.1 >prot_C-linearis_contig101.750.1 ID=prot_C-linearis_contig101.750.1|Name=mRNA_C-linearis_contig101.750.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=323bp
MEADCWWVRSQENDLLKRGSRPNAAQHRSCIKPGDERIHPPWLHPHRGEV QSSGSEHGGAALNQSSPLARPPRDISPRQLPVGQLAALELMNDTSQKEHQ NLLVPGAGHDAESSRQDEPFRSKYEGESDENAYLDARAHTLLEHCRQLLA PSSTPSDQVSTPASTGLEERARTLLTDCKHSSGRPCIPEAQSKVAKASIG EDSKVSCGGCFGERENTHRFQQEQGNVRHAANVSLVRETEKYSALMTSLL HDVHRAGDRSKHDRSLFRSVLVRNGAEERADWLRDDPALSALLRRFGKIE AEIEKRHSAKLKWRRPGVDLQK* back to topmRNA from alignment at C-linearis_contig101:480274..484684+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig101.750.1 ID=mRNA_C-linearis_contig101.750.1|Name=mRNA_C-linearis_contig101.750.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4411bp|location=Sequence derived from alignment at C-linearis_contig101:480274..484684+ (Chordaria linearis ClinC8C monoicous) TCCGTGAGGACGAGCCGAACTCCCGTGATGCACGTAAAGCCATGGAAGCA
GATTGTTGGTAAGCGTGTCGGACACTTGTTTAATCATCTCTTTACACACC
GCAGGAGGTAGGTGGAGACATCCCCTCTTGTGTGACCCCGGATGATAGGC
TAGCTAGTTGTAGTGAAGAAGAGGAGGCAGGCTACGAAAAAACATTAATG
GGCGATAAAAAAAATAAAAAAATAGGTGCTTCGCAAGTAAATTACGACCC
GCAGCGGATGACCGTTGAGTTGCCGTGAATATCGCCCCTACACACCTCCT
TGGCAGTAACCTCTCATCTGGTAACCAAGCCGTCTGTTCATCATATAAAA
TGATCAAATCGGCTATGATAGCATGTCTATACTGCTGTGGCCAACTGCCA
GATGATTTGGCAACTATTTCATATGTACCTGGTAGTCTACATGACAACGT
GTTTAGTAGCGATTGATCGCCGCTTCTTCGGCTCAACATCGAACCACGAT
GTTAATCTACTGCTGTAGTCTCCTCTTGAGCTGATTTGTGGCAAAGGCGT
GATCTATACGATGAGCAGCTGACCAATCGTGTCGGGGGATGCGGAGGGGC
TCAGGAAATCACGATGGCAGGACATATCGTGTGTGATGTGTAATGCGTGT
AAACGTGTATCCATTGGAACGGGTGTACCATCGCCATTTTGTTCTTTGTG
GGGATGGTACGTAAGCATCAACTTAGCTATGTAGATCTCTCCAACAGACA
TCGGTTCGGTGTTTGCATTTCCTGCCACAGCAGTGCATACTCACTTGCTC
TGGCGCTCTTCTCTCTGACGAGTGTCTGCCCTTTGCGATGGCTATGTACT
GAAAGCGCCCCAGACCCTTAGCTACGCTGGGTATTGAGTTTTGAGAGTCT
CAACCTCTGGTATCCGCAGGTTTTCGTACCGGCTCTCCGTCACACGCACA
AATCTACCGAGCTGAACTGCTACATAACTACTCCGAGCTTTGAGGCCTTT
TTGCATAGATAGCAAATTCTTGCGCACCCGGCCGGCGTTTTGGGAAGTCC
AGAAACAGGTACACGCGTCATATTAAAGTAGTAGGACGGTTCAGACTCGG
AATACTTCAAGCGAGTTTGCTGGGGTCAAGCTGGGGAAGGGAGAACCCGG
AACTAACCGTGTCAGCCCAGTTTCTTCTATAGGCAGAGGAACGTATGAAG
ACAAAGAAGATCGCGAAGTGTGTACTGCTAAAATTCCTGATTGTCAGTTT
GCTCGGGTTAGGATGAGGCGCGAAAACAGTCTTGTTGCACGTAACATCGA
GAGCGACGACATAGTGCCGCGCTTCTCATCATGTGCTACTCGTAGATCTC
TTTCTTTTCAGCATGTTGGCGATTTCGCGTATTTTATAGCAAGATGAGTG
CATGTCAGTCCAACCCCAGCACGATCGAATTGGTGCCTGCGTCGAATCTA
CGGAAGCATGTAGACAAGGCACGGCGGCGGTGGATGTGTATACTTCGAAG
TATACATTGTTCCCTCATACGCTTTGATATTCCGCACACTGGGCGTGGTA
AGACTCAAGAAGGCCCAGGCACTTGCTTCGGCATGTGTCACTGCGATAGC
CATGCGACGCTTGTGTCATTCAAGCTGATGACCTTTCAGCTTGCGATCCA
CTTGCTGCGCAGAATGAGTAAGATATAGGACAATGCAGGAGCAGAGAACA
CCCTCGTTTCTGTTGCGAAAAATGTACTGCGTACAAGACCGGGCGTAGCT
GCCCGCCCTCAATAAATGTGCGGAAATGTAGTTGCGGGATGTCACCGACT
TACTCACAAAAGGAATACGTTACGGTTATGGAGTGTACCAAGAGGTTGAG
ACGTTCTGCACGATATGCCTCTACGGCTTTAACAACACACGTGAGAACAG
CAGTCCGGTCACCAATATATCAGTGCTACTGCTGTAGCCGGCAGAAAACA
AATATTTGCTGCGCTCATAGATGTGGAGTCTGCGATACACAGCGATGCGT
CTCCCCATCACACTCATCAACGTGCGTGCTGCCTTTCCTGATGTGCATAA
GCCGTCTCCGCACATGATGGGTGTGGGGTGTGTCTCCGCGTCGGAGGGGT
GCTTGGGAGAAAAGAGCAAGAAAATGCTGTTCGTTTCTTCCAACCAAAAA
GGAACCACTATTCATCCGTAGCCGGGCACAACTCTCGGGGAGCTGGAACT
CTAGTGCACCACGAATCCAGTGTCCATGAAAAGTGTGCTCAGAAGGGAAG
CATCGCACCACTTCTTCAAGCTTTCCAAAATACCCCGAAAGAAGAAAAAT
CCCAGCGCCGTGACGCAGTGACACAGAAGGGAGTTACTGCGGATGGGCAA
GGTTCTGCTCGTGCGCTATCGAAACAGCCAGAACCAAAAATTTGATCAGT
ACATAACTGCTAGCTGGGCACAACTGGACACCGATAGCTCTGCTCAAACG
CCGAATCTCGTGTCCGTGGAAGGTGTGCGATGATGAAAAATTATTGCTCT
GCCTCGTCAATCTTTCCTAAATGTAAAATGGCGTAAGGTGACGCGTTACT
GAAGGGTTTCGTGAAGTGTACTGTTTTGAGAGTAGGGCGAATTGTCCCGC
TTCCATGAGAGCGTTTACACGTAACTCTAGTCATCCATATGGGACACAGG
TTCACGAAAGGAGATGGTAGCATCTTTCTCGGCTCGTGCAGACCCACGGC
CTGCCTGATTGCAAAGCAGTTCTATTCAAGATGGACCTGGAAACTTGAGA
AGAAGAGCTCTCCGAGTCCCTTTTCTCCCTAGACTTGTATCACCGCTCGG
ATATTTTGTCGGCACAATGTGTCTCCGTTGTAACGGAGAGTTTGAGCGTC
ATGTCGGGGAGAGTTTGAACCCCTGTCCGAATTCGTCAATTATTTTTTGT
GTTGTTTAAATTCATGCTCGTAGGTGGGTGAGATCTCAGGAGAACGATTT
GTTGAAAAGGGGTTCAAGGCCAAACGCCGCCCAGCACCGATCATGCATCA
AACCCGGAGACGAGAGGATACACCCTCCTTGGCTGCATCCACATCGAGGC
GAGGTTCAATCTAGTGGCTCGGAGCACGGAGGCGCGGCGTTGAATCAGAG
TTCGCCTTTAGCGCGTCCTCCGCGTGATATATCGCCTCGACAACTACCTG
TCGGCCAACTAGCGGCGCTCGAGCTCATGAACGACACGTCCCAAAAGGAA
CATCAGAATCTGCTCGTTCCAGGAGCTGGTCATGATGCTGAAAGCTCCAG
GCAGGATGAACCATTCCGTTCAAAGTATGAGGGAGAAAGCGACGAAAACG
CGTACCTGGATGCTCGCGCCCACACGTTACTCGAACACTGTAGACAGCTG
CTTGCGCCATCATCTACTCCATCAGATCAGGTCCGTCGGGTTGTTATTAA
TTTTTAGCTCACATTGAGTGCAACATCGCACGCCTCGAGGCCATCGTCTG
ATGTAACCGTTGCTTCTCCAGGCCTCAGAAAGTTCGAATTTTTTCACTCA
AACTCCAAGTTTTCACCAAAAGCTATGTGGGATCGAAGCATGATCGACTA
CTATTATAGGAATCCCTGTTGAGCAGCTGCAGATTATTTAGAGTGCCGTA
TCTCATGCGAGGCACCGCCGTATCGCGTTGTCACAAAGATAAGGGTGCCA
ATCGCCTGGAGGACCTTTGCTTTCAATATTTTGGTTGCCTTCGGTCATTT
TTCGAGCACAGGACCAAAACTGACCGGGTACGTGGCGCTGCTGCATGCAG
GTGTCGACGCCTGCTTCTACTGGTTTAGAGGAGCGTGCGCGGACGCTGTT
GACCGACTGCAAGCATTCTAGTGGCCGACCTTGCATTCCAGAAGCACAGA
GCAAGGTTGCCAAGGCCTCTATTGGGGAAGATTCCAAAGTTTCTTGTGGT
GGGTGTTTCGGTGAGAGGGAGAACACGCACCGTTTCCAGCAAGAACAGGG
GAATGTTCGACATGCTGCCAACGTGAGCCTCGTTCGTGAAACGGAGAAGT
ATTCAGCACTCATGACTTCTCTCCTCCACGATGTCCATCGAGCCGGCGAC
AGGAGCAAGCATGACCGCTCGTTGTTCAGGTCAGTATTGGTCCGTAATGG
TGCTGAAGAGCGGGCGGACTGGCTACGTGACGACCCCGCACTCTCGGCAT
TGCTCCGCCGTTTTGGCAAGATCGAGGCGGAGATTGAGAAGCGGCACTCT
GCGAAATTGAAATGGCGCAGACCGGGCGTTGATCTACAGAAGTGACGACA
CGCACGAACACACGATTGACAGACGGGCACCTCTTTCCCGCGAAATCTGG
AAGCCAGCACAGGCCTGACTAGTGGTTTTCTCGGTCTTCTGTGATCGCTT
CTAACTGTGTCTGCTTTGTGTATAGTAGCTCGCAAAAATGAAGAATCTGA
AAACCAACAAA back to topCoding sequence (CDS) from alignment at C-linearis_contig101:480274..484684+ >mRNA_C-linearis_contig101.750.1 ID=mRNA_C-linearis_contig101.750.1|Name=mRNA_C-linearis_contig101.750.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1938bp|location=Sequence derived from alignment at C-linearis_contig101:480274..484684+ (Chordaria linearis ClinC8C monoicous) ATGGAAGCAGATTGTTGATGGAAGCAGATTGTTGGTGGGTGAGATCTCAG GAGAACGATTTGTTGAAAAGGGGTTCAAGGCCAAACGCCGCCCAGCACCG ATCATGCATCAAACCCGGAGACGAGAGGATACACCCTCCTTGGCTGCATC CACATCGAGGCGAGGTTCAATCTAGTGGCTCGGAGCACGGAGGCGCGGCG TTGAATCAGAGTTCGCCTTTAGCGCGTCCTCCGCGTGATATATCGCCTCG ACAACTACCTGTCGGCCAACTAGCGGCGCTCGAGCTCATGAACGACACGT CCCAAAAGGAACATCAGAATCTGCTCGTTCCAGGAGCTGGTCATGATGCT GAAAGCTCCAGGCAGGATGAACCATTCCGTTCAAAGTATGAGGGAGAAAG CGACGAAAACGCGTACCTGGATGCTCGCGCCCACACGTTACTCGAACACT GTAGACAGCTGCTTGCGCCATCATCTACTCCATCAGATCAGGTGGGTGAG ATCTCAGGAGAACGATTTGTTGAAAAGGGGTTCAAGGCCAAACGCCGCCC AGCACCGATCATGCATCAAACCCGGAGACGAGAGGATACACCCTCCTTGG CTGCATCCACATCGAGGCGAGGTTCAATCTAGTGGCTCGGAGCACGGAGG CGCGGCGTTGAATCAGAGTTCGCCTTTAGCGCGTCCTCCGCGTGATATAT CGCCTCGACAACTACCTGTCGGCCAACTAGCGGCGCTCGAGCTCATGAAC GACACGTCCCAAAAGGAACATCAGAATCTGCTCGTTCCAGGAGCTGGTCA TGATGCTGAAAGCTCCAGGCAGGATGAACCATTCCGTTCAAAGTATGAGG GAGAAAGCGACGAAAACGCGTACCTGGATGCTCGCGCCCACACGTTACTC GAACACTGTAGACAGCTGCTTGCGCCATCATCTACTCCATCAGATCAGGT GTCGACGCCTGCTTCTACTGGTTTAGAGGAGCGTGCGCGGACGCTGTTGA CCGACTGCAAGCATTCTAGTGGCCGACCTTGCATTCCAGAAGCACAGAGC AAGGTTGCCAAGGCCTCTATTGGGGAAGATTCCAAAGTTTCTTGTGGTGG GTGTTTCGGTGAGAGGGAGAACACGCACCGTTTCCAGCAAGAACAGGGGA ATGTTCGACATGCTGCCAACGTGAGCCTCGTTCGTGAAACGGAGAAGTAT TCAGCACTCATGACTTCTCTCCTCCACGATGTCCATCGAGCCGGCGACAG GAGCAAGCATGACCGCTCGTTGTTCAGGTCAGTATTGGTCCGTAATGGTG CTGAAGAGCGGGCGGACTGGCTACGTGACGACCCCGCACTCTCGGCATTG CTCCGCCGTTTTGGCAAGATCGAGGCGGAGATTGAGAAGCGGCACTCTGC GAAATTGAAATGGCGCAGACCGGGCGTTGATCTACAGAAGTGAGTGTCGA CGCCTGCTTCTACTGGTTTAGAGGAGCGTGCGCGGACGCTGTTGACCGAC TGCAAGCATTCTAGTGGCCGACCTTGCATTCCAGAAGCACAGAGCAAGGT TGCCAAGGCCTCTATTGGGGAAGATTCCAAAGTTTCTTGTGGTGGGTGTT TCGGTGAGAGGGAGAACACGCACCGTTTCCAGCAAGAACAGGGGAATGTT CGACATGCTGCCAACGTGAGCCTCGTTCGTGAAACGGAGAAGTATTCAGC ACTCATGACTTCTCTCCTCCACGATGTCCATCGAGCCGGCGACAGGAGCA AGCATGACCGCTCGTTGTTCAGGTCAGTATTGGTCCGTAATGGTGCTGAA GAGCGGGCGGACTGGCTACGTGACGACCCCGCACTCTCGGCATTGCTCCG CCGTTTTGGCAAGATCGAGGCGGAGATTGAGAAGCGGCACTCTGCGAAAT TGAAATGGCGCAGACCGGGCGTTGATCTACAGAAGTGA back to top
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