mRNA_C-linearis_contig101.748.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig101.748.1
Unique NamemRNA_C-linearis_contig101.748.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig101.748.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 426 bits (1095), Expect = 1.200e-129
Identity = 234/456 (51.32%), Postives = 300/456 (65.79%), Query Frame = 1 
Query: 1627 RCRENDIVISG--EEGAKLYEALQ-KPEIVQMTSRLEEGSIARAVVEENNRWNRSNGAAKGWRFDAKVLRWACYVQAKIGGGGYDILREVLHLPHRDHLRKLKASSAPLKSGLQEHNIEAEGKIAAANNASR--------------------FELLGMLVWDLMHINANGFTFRPNGGGLSGLIDTHSFF-NPVWAVKGVDANIGLEKTLETFVATQYLEVFWVSLGNPEYKFVVWREAVRSLNADYIATMLHEVMLALAQAHEDKVLDVVCTVCDVAAEHRSYQSNMATETFGRWARQGGSRSARFEAKFKDFPTASQHPYHLRPVFNLSDPMHLVKKLVNALWHSDLAWKKRSLGKLFYNEATGEEEWADFSLKTLERVYEQEEMGGGTKTVEELVADLQRFRSLTPEQFRRTSHNCMSVQLSCKDILEHRFAHIRQAMG----CHKNPTKELA 2910
            RCRE+D+VI+   E+G +L+E L   P++  + +RL EGS+ARAVVEE  R+N+  G+AKGWRF+AKVLRWACY  AK+GG GY +LR+VLHLPH  H++K+ A+S   K G Q H IEA  K+A  +N S                     F+LLG+LVWDLMH+N N F   PNGGG+ GL+D  SFF +P+ AV+GVD +I LEKTLETFVATQYLEVFWVS+GNP+YKF V+REAVR L+   I+ ML E+   L +AHEDK  DV+ TVCD AAEHRS+Q + AT TF  WA+        FE + KD+P A +HP+H  PVFN+SDP+HL+KK+VNALW+S L  K+R L  L++N  T   E A FSLKTLE+ + +EE     +T  E  A L+RF  +      R SH CMSV+LS K + +     I  A G      K P+ ELA
Sbjct:  225 RCREDDVVIAADNEQGRRLHETLSGNPDVKDVFARLPEGSLARAVVEEMMRYNQHRGSAKGWRFNAKVLRWACYALAKMGGAGYQVLRDVLHLPHIKHVQKIVAASTSTKMGEQYHLIEAFAKMACEDNXSTSRYVELFWFYSLLWRPYGLVFDLLGILVWDLMHLNQNDFRVCPNGGGIEGLVDRDSFFRHPLDAVQGVDEHITLEKTLETFVATQYLEVFWVSIGNPKYKFCVYREAVRGLSGPKISRMLDEITNKLYEAHEDKKFDVIGTVCDGAAEHRSFQQHFATTTFSEWAKSDSV----FEQRHKDYPVAFKHPHHDGPVFNMSDPVHLLKKVVNALWYSGLDSKERHLQNLWWNPLTDAPELASFSLKTLEKAWREEEGHRANRTAAERAATLRRFLKMDAACLDRDSHTCMSVKLSAKCVSKTAMHVIASAQGKLLALDKPPSGELA 676
[Close]
BLAST of mRNA_C-linearis_contig101.748.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 391 bits (1005), Expect = 3.780e-119
Identity = 205/407 (50.37%), Postives = 270/407 (66.34%), Query Frame = 1 
Query: 1639 NDIVI----SGEEGAKLYEALQKPEIVQMTSRLEEGSIARAVVEENNRWNRSNGAAKGWRFDAKVLRWACYVQAKIGGGGYDILREVLHLPHRDHL-RKLKASSAPLKSGLQEHNIEAEGKIAAANNASRFELLGMLVWDLMHINANGFTFRPNGGGLSGLIDTHS-FFNPVWAVKGVDANIGLEKTLETFVATQYLEVFWVSLGNPEYKFVVWREAVRSLNADYIATMLHEVMLALAQAHEDKVLDVVCTVCDVAAEHRSYQSNMATETFGRWARQGGSRSARFEAKFKDFPTASQHPYHLRPVFNLSDPMHLVKKLVNALWHSDLAWKKRSLGKLFYNEATGEEEWADFSLKTLERVYEQEEMGGGTKTVEELVADLQRFRSLTPEQFRRTSHNCMSVQLSCKDI 2841
            +DIVI      ++G +L+EAL+  ++ ++ + + E S  RA+V+     N   G  KGWR+  KV+RW CY  AK+G  GY ++R++LHLP    + R  +A       GLQ   IEA GK+AA  N  RF+L G+L WD MH+N NGFT RPNGGG+SGL+   S  ++P+ AV+GVD  I LE TLETF+ATQYLEV+WVS+GNP+YKF V+REAVR L+   I+ ML E+ML L +AH DK +DV+ TVCD A EHRS+Q+ +AT TFG WA       +R E +F DFP A  HP+H  PVFN+S P HL+  +VNALW+S L  K+R L  LF+N  T E EW  FSLKTLE V+  EE GGG+ +  E+ ++L+RF    PE   R SHNCMSV+LS K +
Sbjct:   32 DDIVIHPGEDDDQGRRLHEALKTEDVEELFADIPEDSYERALVDHMMDRNEREGPKKGWRYSPKVVRWYCYALAKMGKAGYALIRDILHLPSISTVNRARRAGRGTATWGLQHDLIEAHGKMAAEENLGRFDLAGILCWDCMHLNTNGFTVRPNGGGISGLVSGDSVLYHPLEAVQGVDKTISLEDTLETFMATQYLEVWWVSIGNPKYKFCVYREAVRGLSGPKISRMLDEIMLRLYEAHPDKKIDVIGTVCDGAGEHRSFQTKLATSTFGEWA----DPKSRLEERFADFPMAFNHPHHGEPVFNMSGPPHLLX-VVNALWYSSLPSKQRHLKNLFWNRDTEEFEWVSFSLKTLETVWVNEERGGGSLSAAEVASNLRRFLKFEPEMLDRNSHNCMSVRLSAKCV 433
[Close]
BLAST of mRNA_C-linearis_contig101.748.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 363 bits (931), Expect = 1.410e-105
Identity = 278/848 (32.78%), Postives = 407/848 (48.00%), Query Frame = 1 
Query:  646 YLWEHNRLREEMSAKSEDWCRWILEWAREKKPFKGSDTAELSVRATGLYMKAIVMDKPLAALYGLTSTKNKRNYSVFVLSTSPLASDLALAEVHFSVLTGWTRH------YSGGDTGGFQL------AYPKPR**MVTMDTPGPSGSTRVNKVAVRGHDATSDKVFRDICDGIKEIHTVDQLHEALLAVGSVRPCEDMRHNHLLPYGPKVDAG----FDHLVRLAHRSGKPND-------GSGSLGYLPGF--GSTSVSATLQMVDEEYV-----------FFHDTCSVLADSTSTATQG-----QCKGCTSSGKGRFVARAERAASGEFDMSTPNVLLTTVQK-----------DQKL-AVQASMAKVPKKKVT-RQKALRCRENDIVISGEEGAKLYEALQKPEIVQMT-SRLEEGSIARAVVEENNRWNRSNGAAKGWRFDAKVLRWACYVQAKIGGGGYDILREVLHLPHRDHLRKLKASSAPLKSGLQEHNIEAEGKIAAANNASRFELLGMLVWDLMHINANGFTFRPNGGGLSGLIDTHSFFNPVWAVKGVDANIGLEKTLETFVATQYLEVFWVSLGNPEYKFVVWREAVRSLNADYIATMLHEVMLALAQAHEDKVLDVVCTVCDVAAEHRSYQSNMATETFGRWARQGGSRSARFEAKFKDFPTASQHPYHLRPVFNLSDPMHLVKKLVNALWHSDLAWKKRSLGKLFYNEATGEEEWADFSLKTLERVYEQEEMGGGTKTVEELVADLQRFRSLTPEQFRRTSHNCMSVQLSCKDILEHRFAHIRQ--------------AMGCHKNPTKELAFEAGRVGDLVRFLHGSSGRRNASR 2982
            +L  H+R          D  RW+ EW    + ++   T +++ +    ++KA+     LA ++GL +          +++     +   +   H+   T  T+       ++G D  GF        A+ +       +   GP  S   N   VR HDA               I   D L E L  V    PC+ +   H+     K+ AG    F  LVR A R+ + N        G     ++ G   G + VS  L  V    V           F+   C  +A    T  QG     +C+GC    +     R E A+  E   S+ N+ +T+ QK           D KL +  AS+ +     V  R++ +  R+  + +  E+G  L++ L   E  ++  SRL +GS  R   E+  +WN S+G AKG+RF    +R A Y+Q   G   Y++LR VLHLP  + +++L+ ++AP ++ +   NI   GK+AA  +A + +L+G+L WDLMH+N NGF+F PNGGG +GL+D  +FFNP++  +G      +E TLE  VATQY+E+F+VS+G PEYKFVVWREAVRSL+ DYI  ML  VM  LA AH DK  DVV T+CD A EHRS+Q++ A   F  W +  G +    E  F  F     HP HL  VFN+SDPMH++KK+VNALWHSD+  K+R LG     +   E +++ FSLKT +RVY   E    + T EE  A L  F  +    F RT+  CM+V+LS K +       IR+              A+GC++     L        D V   +G    R  +R
Sbjct:  135 FLTLHDRGNGHKIGTGADVLRWVREWLATSR-YRDVVTLDITSQQVAQHLKALAQKDNLADIFGLDAD---------IVTEKGKDAFYTIPSYHWGSWTKTTKPWGADWGFTGNDADGFTFFTAARGAHVEVCLGPTKLKGVGPITSITFNGHCVRNHDALR---------RFTAIGAEDDLTELLNVVWHTLPCQGVSQQHVRE-DAKMPAGAADVFPSLVRQAQRNLESNPTLPFGERGRWQNAFVEGLLSGPSGVSGVLGTVGGHSVPGHGGVGGHKVFWAKGCVGVA----TPFQGLNSVPRCQGCRGFVREALRPRLENASKAESLKSSKNIYMTSAQKVDETIVLAPQRDHKLWSTAASLNRERNATVRLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLRNVLHLPSPERIKQLRRNAAPPRTCVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGFTGLVDETAFFNPIYKHEGGVVK-EVEPTLEKIVATQYVEMFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRVMRYLAMAHPDKAFDVVATICDGAPEHRSFQTHAAILGFCHWIK--GPK----EGSFAGFKVGFLHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLGMWCVTDQD-ELKFSQFSLKTAQRVYNDVEYDNDSMTPEERPATLTIFPGMPVGAFNRTNFTCMNVKLSAKVVSGTIVRAIREVRANQETRGESPDLALGCYEGLAVHL-------NDFVDIFNGEETTRGLAR 943
[Close]
BLAST of mRNA_C-linearis_contig101.748.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 348 bits (893), Expect = 1.310e-99
Identity = 249/712 (34.97%), Postives = 355/712 (49.86%), Query Frame = 1 
Query: 1051 TRVNKVAVRGHDATSDKVFRDICDGIKEIHTVDQLHEALLAVGSVRPCEDMRHNHLLPYGPKVDAG----FDHLVRLAHRSGKPND-------GSGSLGYLPGF--GSTSVSATLQMVDEEYV-----------FFHDTCSVLADSTSTATQG-----QCKGCTSSGKGRFVARAERAASGEFDMSTPNVLLTTVQKDQKLAVQA-------------SMAKVPKKKVT----RQKALRCRENDIVISGEEGAKLYEALQKPEIVQMT-SRLEEGSIARAVVEENNRWNRSNGAAKGWRFDAKVLRWACYVQAKIGGGGYDILREVLHLPHRDHLRKLKASSAPLKSGLQEHNIEAEGKIAAANNASRFELLGMLVWDLMHINANGFTFRPNGGGLSGLIDTHSFFNPVWAVKGVDANIGLEKTLETFVATQYLEVFWVSLGNPEYKFVVWREAVRSLNADYIATMLHEVMLALAQAHEDKVLDVVCTVCDVAAEHRSYQSNMATETFGRWARQGGSRSARFEAKFKDFPTASQHPYHLRPVFNLSDPMHLVKKLVNALWHSDLAWKKRSLGKLFYNEATGEEEWADFSLKTLERVYEQEEMGGGTKTVEELVADLQRFRSLTPEQFRRTSHNCMSVQLSCKDILEHRFAHIRQ--------------AMGCHKNPTKELAFEAGRVGDLVRFLHGSSGRRNASRSNSVFRL 3003
            T +N   VR HDA               I   D L E L  V    PC+ +   H+     K+ AG    F  LVR A R+ + N        G     ++ G   G + VS  L  V    V           F+   C  +A    T  QG     +C+GC    +     R + A+  E   S+ N+ +T  QK     V A             + A + +++ T    R++ +  R+  + +  E+G  L++ L   E  ++  SRL +GS  R   E+  +WN S+G AKG+RF    +R A Y+Q   G   Y++LR VLHLP  + +++L+ ++AP ++G+   NI   GK+AA  +A + +L+G+L WDLMH+N NGF+F PNGGG +GL+D  +FFNP++  +G      +E  LE  VATQY+E+F+VS+G PEYKFVVWREAVRSL+ DYI  ML   M  LA AH DK  DV+ T CD A EHRS+Q++ A   F  W +  G +    E  F  F     HP HL  VFN+SDPMH++KK+VNALWHSD+  K+R LG     +   E +++ FSLKT +RVY   E    + T EE  A L  F  +    F RT+  CM+V+LS K +       IR+              A+GC++     L        D V   +G  GR    R   + ++
Sbjct:  177 TSINGHCVRNHDALR---------RFTAIGAEDDLTELLNVVWYTLPCQGVSQQHVRE-DAKMPAGAADVFPSLVRQAQRNLESNPTLPFGERGRWQNAFVEGLLSGPSGVSGVLGTVGGHSVPGHGGVGGHKVFWAKGCVGVA----TPFQGLNSVPRCQGCRGFVREALRPRLQNASKAESLKSSKNIYMTRAQKVDVTIVSAPQRVPRITSKLWSTAADLNRERTTTARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLRNVLHLPSPERIKQLRRNAAPPRTGVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGFTGLVDETTFFNPIYKHEGGVVK-EVEPILEKIVATQYVEMFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRAMRYLAMAHPDKAFDVIATECDGAPEHRSFQTHAAILGFCHWIK--GPK----EGSFAGFKVGFLHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLGMWCVTDQD-ELKFSQFSLKTAQRVYNDVEYDNDSMTPEERAATLTIFPGMPVGAFNRTNFTCMNVKLSAKVVSGTIVRAIREVRANQETRGESPDLALGCYEGLAVHL-------NDFVDIFNGDYGRTKFERRAKINKM 859
[Close]
BLAST of mRNA_C-linearis_contig101.748.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 300 bits (769), Expect = 1.090e-84
Identity = 172/440 (39.09%), Postives = 241/440 (54.77%), Query Frame = 1 
Query: 1753 VEENNRWNRSNGAAKGWRFDAKVLRWACYVQAKIGGGGYDILREVLHLPHRDHLRKLKASSAPLKSGLQEHNIEAEGKIAAANNASRFELLGMLVWDLMHINANGFTFRPNGGGLSGLIDTHSFFNPVWAVKGVDANIGLEKTLETFVATQYLEVFWVSLGNPEYKFVVWREAVRSLNADYIATMLHEVMLALAQAHEDKVLDVVCTVCDVAA----------------------------------------EHRSYQSNMATETFGRWARQGGSRSARFEAKFKDFPTASQHPYHLRPVFNLSDPMHLVKKLVNALWHSDLAWKKRSLGKLFYNEATGEEEWADFSLKTLERVYEQEEMGGGTKTVEELVADLQRFRSLTPEQFRRTSHNCMSVQLSCKDILEHRFAHIRQAMGCHKN----PTKELAFEAGRVGDLV 2940
             ++  +WN S+G AKG+RF    +R A Y+Q   G   Y++L  VLHLP  + +++L+ ++AP ++G+   NI   GK+AA  +  + +L+G+L WDLMH+N NGF+F PNGGG +GL+D  +FFNP++  +G      +E  LE  VATQY+E+++VS+G PEYKFVVWREAVRSL+ D+I  ML  VM +LA AH DK  DV+ TVCD A                                         + RS+Q++ A   F RW +  G +    E  F  F     HP HL  VFN+SDPMH++KK+VNALWHSD+  K+R LG     +   E +++ FSLKT +RVY   E    + T EE  A L  F  +    F RT+  CM+V+LS K +       IR+     +     P   L    G + D V
Sbjct:  302 AQDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLTNVLHLPSPERIKQLRRNAAPPRTGVLTENILKNGKLAATQDTDKADLMGVLAWDLMHLNKNGFSFAPNGGGFTGLVDETTFFNPIYKHEGGIVK-EVEPILEKIVATQYVEMYFVSVGKPEYKFVVWREAVRSLSTDFIQRMLIRVMRSLAMAHPDKAFDVIATVCDGAPGQLGEVTLVVAKWMTLERPCVEPYFMIGPFPLVAPSRTPLDSRSFQTHAAISGFCRWIK--GPQ----EGSFTSFKVGILHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLGMWCVTDQD-ELKFSQFSLKTAQRVYNDVEYDNNSITPEERAATLTIFPGMPVSAFNRTNFTCMNVKLSAKVVSGTIVRAIREVRANRETRGEPPDLALGCYEGHLNDFV 733
[Close]
BLAST of mRNA_C-linearis_contig101.748.1 vs. uniprot
Match: A0A6H5KQL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL9_9PHAE)

HSP 1 Score: 258 bits (659), Expect = 1.050e-75
Identity = 125/215 (58.14%), Postives = 160/215 (74.42%), Query Frame = 1 
Query: 1771 WNRSNGAAKGWRFDAKVLRWACYVQAKIGGGGYDILREVLHLPHRDHLRKLKASSAPLKS-GLQEHNIEAEGKIAAANNASRFELLGMLVWDLMHINANGFTFRPNGGGLSGLIDTHSFF-NPVWAVKGVDANIGLEKTLETFVATQYLEVFWVSLGNPEYKFVVWREAVRSLNADYIATMLHEVMLALAQAHEDKVLDVVCTVCDVAAEHRSYQ 2409
            +N+  G++KGWRF  KVLRWA Y  A +G  GY+++++VLHLP   HLRK++ ++A   + G+Q H +EA GK+AA +N  RF+L G+LVWDLMH+N NGF  RPNGGG+ GL+D  S   +P+  VKGV  NI LE+TLETFVATQYLEVFWVS+GN +YKF V+REAV+ L    +  ML+EVML L   HEDK  DV+CTVCD AAEHRS+Q
Sbjct:    4 YNKFQGSSKGWRFSPKVLRWALYALANMGSAGYNVIQDVLHLPSIGHLRKVRRAAAGTTTWGVQHHLVEAYGKMAAEDNLGRFDLCGILVWDLMHLNTNGFKVRPNGGGIQGLVDPDSILRHPLDGVKGVADNISLEETLETFVATQYLEVFWVSIGNLKYKFCVYREAVKGLTGPKLKRMLNEVMLRLYTVHEDKQFDVICTVCDGAAEHRSFQ 218
[Close]
BLAST of mRNA_C-linearis_contig101.748.1 vs. uniprot
Match: D8LK65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK65_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 1.740e-65
Identity = 120/208 (57.69%), Postives = 145/208 (69.71%), Query Frame = 1 
Query: 2212 EVFWVSLGNPEYKFVVWREAVRSLNADYIATMLHEVMLALAQAHEDKVLDVVCTVCDVAAEHRSYQSNMATETFGRWARQGGSRSARFEAKFKDFPTASQHPYHLRPVFNLSDPMHLVKKLVNALWHSDLAWKKRSLGKLFYNEATGEEEWADFSLKTLERVYEQEEMGGGTKTVEELVADLQRFRSLTPEQFRRTSHNCMSVQLSCK 2835
            +VFWVSLGNP YKF V+REAVR L    +A ML ++M +L QAH DK  DV+ TVCD AAEHRS+Q  +A   F  WAR G S    FE +  DF  A +HP H  PVFN+SDP+HL+KK+VNALWHSD+  K+R L KL+YNEA  + EW  FSLKTLE+V+++EE GGG ++V E  A L RF    PE F R SHNCMSV LS K
Sbjct:   58 KVFWVSLGNPTYKFCVFREAVRGLTGPKLARMLDDIMTSLYQAHSDKNFDVIGTVCDGAAEHRSFQKYLAEIAFSEWAR-GDSA---FEKRMGDFKVAFKHPSHGGPVFNMSDPVHLLKKVVNALWHSDIPSKQRDLKKLWYNEAAEDYEWVSFSLKTLEKVWKEEEAGGGVRSVAEQAAHLIRFLKFDPEMFTRNSHNCMSVGLSAK 261
[Close]
BLAST of mRNA_C-linearis_contig101.748.1 vs. uniprot
Match: D7G5R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R1_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 2.870e-59
Identity = 120/260 (46.15%), Postives = 164/260 (63.08%), Query Frame = 1 
Query: 1618 KALRCRENDIVISGEEGAKLYEALQKPEIVQM-TSRLEEGSIARAVVEENNRWNRSNGAAKGWRFDAKVLRWACYVQAKIGGGGYDILREVLHLPHRDHLRKLKASSAPLKSGLQEHNIEAEGKIAAANNASRFELLGMLVWDLMHINANGFTFRPNGGGLSGLIDTHSFFNPVWAVKGVDANIGLEKTLETFVATQYLEVFWVSLGNPEYKFVVWREAVRSLNADYIATMLHEVMLALAQAHEDKVLDVVCTVCDVAAE 2394
            + L  R+    I+ ++GA L+E L  PE   +   +L E S  RA+ E+  RWN    ++KG+RF    LR A Y+    G  GY++LR  +HLP    +++L+A +AP ++G+   NI   G++AA  +A + +L G+L WDL H++ NG  F P  G L+GL+D  +FFNPV+  K VD + GL K L   +ATQY+E F+VSLGNPEYKFVVWREAVRSL+ DYI  ML   M  L+ AH DK  DVV TVCD A+E
Sbjct:   16 RVLAARKESERINDQQGAALHELLLDPESRTIFEKKLPEDSAQRAIFEDQLRWNTRMASSKGFRFHPATLRIAIYMHGVAGSAGYNMLRNFIHLPSPRRVQQLQAQAAPPRTGVLVDNIRKYGRLAAEQDADKADLTGVLSWDLTHLSKNGLDFAPKEGRLTGLVDEATFFNPVYQGK-VDEDGGLGKQLGKILATQYVE-FFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFLSIAHRDKGFDVVATVCDGASE 273
[Close]
BLAST of mRNA_C-linearis_contig101.748.1 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 4.530e-37
Identity = 87/241 (36.10%), Postives = 142/241 (58.92%), Query Frame = 1 
Query: 1438 QCKGCTSSGKGRFVARAERAASGEFDMSTPNVLLTTVQKDQKLAVQASMAKVPKKKVTR--QKALRCRENDIVISGEEGAKLYEALQKPEIVQMT-SRLEEGSIARAVVEENNRWNRSNGAAKGWRFDAKVLRWACYVQAKIGGGGYDILREVLHLPHRDHLRKLKASSAPLKSGLQEHNIEAEGKIAAANNASRFELLGMLVWDLMHINANGFTFRPNGGGLSGLIDTHSFFNPVWAVKG 2151
            +C+GC    +     R E A+  E   S+ N+ +T+ QKD KL   A+     +    R  ++ +  R+  + +  E+G  L++ L   E  ++  SRL +GS  R   E+  +WN S+G AKG+RF    +R A Y+Q   G   Y++L  VLHLP  + +++L+ ++AP ++G+   NI   GK+AA  +A + +L+G+L WDLMH+N +GF+F PNGGG +GL+D  +FFNP++  +G
Sbjct:  294 RCQGCRDFVREALRPRLENASKAESLKSSKNLYMTSAQKDHKLWSTAADLNRERNATARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLMNVLHLPSPERIKQLRRNAAPPRTGVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKSGFSFTPNGGGFTGLVDETTFFNPIYKHEG 534
[Close]
BLAST of mRNA_C-linearis_contig101.748.1 vs. uniprot
Match: A0A6H5KYD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD6_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 2.800e-36
Identity = 70/118 (59.32%), Postives = 86/118 (72.88%), Query Frame = 1 
Query: 2482 KFKDFPTASQHPYHLRPVFNLSDPMHLVKKLVNALWHSDLAWKKRSLGKLFYNEATGEEEWADFSLKTLERVYEQEEMGGGTKTVEELVADLQRFRSLTPEQFRRTSHNCMSVQLSCK 2835
            + KDF  A +HP H RPVFN+S+P+HL+KK+VNALWHS LA K+R L  L+++  T EEEW  FSLKTLE V+ QEE GGG ++  E  A L RFR + PE F R SHNCMSV+LS K
Sbjct:    2 RHKDFKVAFRHPQHGRPVFNMSEPVHLLKKVVNALWHSGLADKQRDLKGLWWDPKTEEEEWVSFSLKTLEEVWNQEEAGGGIRSGAEQAAHLSRFRKVNPEMFYRNSHNCMSVKLSAK 119
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KFP1_9PHAE1.200e-12951.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE3.780e-11950.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF4_9PHAE1.410e-10532.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI1.310e-9934.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5M0_9PHAE1.090e-8439.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQL9_9PHAE1.050e-7558.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK65_ECTSI1.740e-6557.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5R1_ECTSI2.870e-5946.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2I2_ECTSI4.530e-3736.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYD6_9PHAE2.800e-3659.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:442691..450950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_002920.1
Exons13
Model size3243
Cds size2172
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927364.8962078-UTR-C-linearis_contig101:442690..4429441622927364.8962078-UTR-C-linearis_contig101:442690..442944Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 442691..442944 +
1690879655.1418517-UTR-C-linearis_contig101:442690..4429441690879655.1418517-UTR-C-linearis_contig101:442690..442944Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 442691..442944 +
1622927364.9048834-UTR-C-linearis_contig101:443144..4432991622927364.9048834-UTR-C-linearis_contig101:443144..443299Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 443145..443299 +
1690879655.151747-UTR-C-linearis_contig101:443144..4432991690879655.151747-UTR-C-linearis_contig101:443144..443299Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 443145..443299 +
1622927364.914466-UTR-C-linearis_contig101:444608..4447661622927364.914466-UTR-C-linearis_contig101:444608..444766Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 444609..444766 +
1690879655.1607888-UTR-C-linearis_contig101:444608..4447661690879655.1607888-UTR-C-linearis_contig101:444608..444766Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 444609..444766 +
1622927364.9241788-UTR-C-linearis_contig101:445139..4453821622927364.9241788-UTR-C-linearis_contig101:445139..445382Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 445140..445382 +
1690879655.174914-UTR-C-linearis_contig101:445139..4453821690879655.174914-UTR-C-linearis_contig101:445139..445382Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 445140..445382 +
1622927364.9331985-UTR-C-linearis_contig101:445591..4457951622927364.9331985-UTR-C-linearis_contig101:445591..445795Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 445592..445795 +
1690879655.1858563-UTR-C-linearis_contig101:445591..4457951690879655.1858563-UTR-C-linearis_contig101:445591..445795Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 445592..445795 +
1622927365.034371-UTR-C-linearis_contig101:450893..4509501622927365.034371-UTR-C-linearis_contig101:450893..450950Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 450894..450950 +
1690879655.2819016-UTR-C-linearis_contig101:450893..4509501690879655.2819016-UTR-C-linearis_contig101:450893..450950Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 450894..450950 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927364.943695-CDS-C-linearis_contig101:445795..4457981622927364.943695-CDS-C-linearis_contig101:445795..445798Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 445796..445798 +
1690879655.1946929-CDS-C-linearis_contig101:445795..4457981690879655.1946929-CDS-C-linearis_contig101:445795..445798Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 445796..445798 +
1622927364.9531088-CDS-C-linearis_contig101:446236..4463801622927364.9531088-CDS-C-linearis_contig101:446236..446380Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 446237..446380 +
1690879655.2036617-CDS-C-linearis_contig101:446236..4463801690879655.2036617-CDS-C-linearis_contig101:446236..446380Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 446237..446380 +
1622927364.9645963-CDS-C-linearis_contig101:446742..4471351622927364.9645963-CDS-C-linearis_contig101:446742..447135Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 446743..447135 +
1690879655.212973-CDS-C-linearis_contig101:446742..4471351690879655.212973-CDS-C-linearis_contig101:446742..447135Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 446743..447135 +
1622927364.973868-CDS-C-linearis_contig101:447465..4476691622927364.973868-CDS-C-linearis_contig101:447465..447669Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 447466..447669 +
1690879655.222893-CDS-C-linearis_contig101:447465..4476691690879655.222893-CDS-C-linearis_contig101:447465..447669Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 447466..447669 +
1622927364.9827414-CDS-C-linearis_contig101:448306..4485221622927364.9827414-CDS-C-linearis_contig101:448306..448522Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 448307..448522 +
1690879655.232327-CDS-C-linearis_contig101:448306..4485221690879655.232327-CDS-C-linearis_contig101:448306..448522Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 448307..448522 +
1622927364.9948492-CDS-C-linearis_contig101:448700..4489401622927364.9948492-CDS-C-linearis_contig101:448700..448940Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 448701..448940 +
1690879655.2423882-CDS-C-linearis_contig101:448700..4489401690879655.2423882-CDS-C-linearis_contig101:448700..448940Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 448701..448940 +
1622927365.0032778-CDS-C-linearis_contig101:449112..4492941622927365.0032778-CDS-C-linearis_contig101:449112..449294Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 449113..449294 +
1690879655.2509282-CDS-C-linearis_contig101:449112..4492941690879655.2509282-CDS-C-linearis_contig101:449112..449294Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 449113..449294 +
1622927365.0126116-CDS-C-linearis_contig101:449556..4499951622927365.0126116-CDS-C-linearis_contig101:449556..449995Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 449557..449995 +
1690879655.2651668-CDS-C-linearis_contig101:449556..4499951690879655.2651668-CDS-C-linearis_contig101:449556..449995Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 449557..449995 +
1622927365.025013-CDS-C-linearis_contig101:450542..4508931622927365.025013-CDS-C-linearis_contig101:450542..450893Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 450543..450893 +
1690879655.2738376-CDS-C-linearis_contig101:450542..4508931690879655.2738376-CDS-C-linearis_contig101:450542..450893Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 450543..450893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.748.1prot_C-linearis_contig101.748.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig101 445796..450893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig101.748.1

>prot_C-linearis_contig101.748.1 ID=prot_C-linearis_contig101.748.1|Name=mRNA_C-linearis_contig101.748.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=724bp
MVTMDTPGPSGSTRVNKVAVRGHDATSDKVFRDICDGIKEIHTVDQLHEA
LLAVGSVRPCEDMRHNHLLPYGPKVDAGFDHLVRLAHRSGKPNDGSGSLG
YLPGFGSTSVSATLQMVDEEYVFFHDTCSVLADSTSTATQGQCKGCTSSG
KGRFVARAERAASGEFDMSTPNVLLTTVQKDQKLAVQASMAKVPKKKVTR
QKALRCRENDIVISGEEGAKLYEALQKPEIVQMTSRLEEGSIARAVVEEN
NRWNRSNGAAKGWRFDAKVLRWACYVQAKIGGGGYDILREVLHLPHRDHL
RKLKASSAPLKSGLQEHNIEAEGKIAAANNASRFELLGMLVWDLMHINAN
GFTFRPNGGGLSGLIDTHSFFNPVWAVKGVDANIGLEKTLETFVATQYLE
VFWVSLGNPEYKFVVWREAVRSLNADYIATMLHEVMLALAQAHEDKVLDV
VCTVCDVAAEHRSYQSNMATETFGRWARQGGSRSARFEAKFKDFPTASQH
PYHLRPVFNLSDPMHLVKKLVNALWHSDLAWKKRSLGKLFYNEATGEEEW
ADFSLKTLERVYEQEEMGGGTKTVEELVADLQRFRSLTPEQFRRTSHNCM
SVQLSCKDILEHRFAHIRQAMGCHKNPTKELAFEAGRVGDLVRFLHGSSG
RRNASRSNSVFRLPDMCGNSARASLPVSASERADGFRSPTCDEPCHVLEA
RSVLTECGPEWYALHVWSVCVFC*
back to top

mRNA from alignment at C-linearis_contig101:442691..450950+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.748.1 ID=mRNA_C-linearis_contig101.748.1|Name=mRNA_C-linearis_contig101.748.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8260bp|location=Sequence derived from alignment at C-linearis_contig101:442691..450950+ (Chordaria linearis ClinC8C monoicous)
TGGAGATCAAAAATACCAATCGACACACCCCACTTTTTCAAAAAATGTGT
GTTCTTTAAAAAATGCCTCTTTCAAATTTTTCGCGCGCTCCGCGCGAATA
ATTTAATTAGAACCCAGACCTCCTCTAATATATGGGAGGTGTGCCTACTT
GCCGGCTTGGCAGCCTCGGGCACGAGCGTCCGTGACGGAACAGAGAGAGA
GAGTACGATGGAACCCTCCGGCGAGAAGTACGCCATCTTGAAGCTTGTCG
AGAGGTAAGTCCGGCTCCTCAATACAGTACGAACGAAAGACTCCGGAGGT
CATTTATTTTGCAAACAGAATTCGGGTACAAAGTTGTCACAGAGTGCCCC
AAAGGTATACTTGTACGGACAAAAGGATAGGTGCTGCACTCGAAAAAAAA
ACAAAGTAAATAAGGAAAATGCGGTGGGACCACCTCCCGGCGATTCTGCA
GCAGGCGTTTTTATCAAGGGGATTGGGGGTAGCACCACGGTATCATCTCA
CTTCTTCGAGCCACCGGGAGACCCAACCGGCCTGGAACTGGTCCGAAAGG
GGGGCGTCGCGTAAAGATGGACATCATCGATGTCTCTGCCGAAGCAGAAG
CTCCGAGAGGTACGACAGAAGTAGCGCCATTTGATCACCCGTCACGTTTT
GGTTTGAAATCAGCACTTTTTGGACACTTTGAGGCTCTACGCCTCTCTCA
CATGCTCGTGCTCCGAGGATGTCACTAAGCTCTAACTGCTAGAGGACTTT
GCCACATCTATAGCCAAGCTACGACAAGTGACAGAATCGAAAAAGATTTA
CCAGAGAAAAAATGCGCGTACCTTGACCGACTGGCAGTAGGTGTGCAGTC
TCGCCGAACCTGGTACGCACCTCCTGGCGGCACCGCTACGGGCTGGCACG
AAGGGAGATGAGTCGTGCTGAGAACAGGCCCGCGAACGGTGCATACGGTG
CCTGTGTTGAATAGTTTGATCCCTGCAGGAGGTTGAGCTCTGAAAGCCGC
GGCAGAAGTAGAGCTTTGAGATCATGTTGACACTACTGTTGGTTTGAATC
AAGTTTGAAACAGCAGCACCGGCGCACACACGCGGACCACCAGTAGCAGG
GTCTCTCAACGTTGCTCGTGAACGACGGTTGCAAATGAGCCCACGCTGCA
CAAACGAAGTCCCGTGGCCCTATACCAGCTGAGGCACGTTGCGGATTGAA
AAAATATACACCACAGAAAAAATGCATGTACCTTTGCGGGAGCCGGTCCA
TGAGAGGGTTTTGCGCATGTAACCTCCCGTTCCGAAACACGCAGATGACT
GGACCACAACGTTTCCCCACGATGGACGATTTTTGCAATATGAATACGAA
GTGTTTGTCTTTATATAAGTATCTGACACGAACAAAATGCTCGAAATTGT
TCCAATACATCGAAATTGCCAAAGGTCGTAGGCTTAGGGTGACATTGCAC
ACCTGCCGATATTCCACGAGGGGTTTCCTGGGTTGAAAGGGAGAGAGCGG
GCAGAGTCGGTTGGTCGCCGCGTCTATATGAAACTGCTCTACGCGAAGGT
TGCTGCCCTGGACGTCTTCCTTGTGTGTGAATCATGCAACATTTTGTGCC
GTCTCCGAGGTGGAACATCAATAATTCGTTGTAATTGCACATCAAAATAC
GTGTACTTCGTAGCGCGCGGTCGGCGTACCTGTGCACGAGTTTCTGCTCT
TTGACTCCGAGCTGGAACACCTAAACGTTTACTTGTACCTTAAAACGACG
TACATTTACTTCCCCTGCGGTGGGCGTACCGGCGCAGGAGGTTCTGCTCT
GTGGCTCGACTGACATATGATGCGAAGTATATGTGTGTTGAGCGATACTG
CTGCAGGACTAATAACTACTCTAACTTTGATTCATCATGATTTTGGTCGT
TTTTTTCGTACTCGGCAGCGATGCCGGGTGAAGAACAAGGTACCCCCAAG
AAAGCTGCTGTTCCACATGCGCGCGGTACACCCACACCGTCTGCAGAGAA
GGCTGACCTCGTCAAAAGTAAACGTCCAAAGGGGGTGCAGGAGGAATATG
CTCCGATTCCGCACCACCCGGATAAGGTACGCATATGCTTCAGTGTACTT
TTGGCGGCGAACTTCGTCCACCGCGGTCGTACGATATGGTTCCGAATGCA
TACACAAGTAGATCGCAATCCATTTACGTTTGTACCAAGGCACGAAGTCC
CTGGAACTCTGCAACACGTGCGCGCACTGTCCGAACACGTACACCTGTTG
GTGCTAGAATACAAACCTGTTTCGTTTGCCCTCCGACAATTGCAGATTGA
ACACCACACACATAAATCGTACACACATATACGTATTCTACACCTGCTTT
CCATCTCTCTGTATTCTACATGTGCTTGATGAAGATAGCCACTCATCCTG
TCTTATCTTGCCTTCATACTATACAAACCAAAACTTTCCTTTTTCGCAGG
GTTCGCGCTCCGATCTTCTGCCCGGTTTGTCTGAGGCAGATTACAGCGGC
AAGTGCGACAAACGGCTGGTTTACACGTACCTTTGGGAGCACAACAGACT
TCGCGAGGAGATGTCAGCGAAGTCCGAAGACTGGTGCCGATGGATTCTGG
AGTGGGCGCGAGAGAAGAAACCATTCAAGGGCAGCGACACCGCCGAGCTT
TCCGTGAGGGCGACCGGGCTGTACATGAAGGCGATTGTCATGGTGAGCAG
AGTGTTGAATCAACGGAGGTCGGGGTATGGTTCCCTCGTGTTCATGCATG
ATACGACCCCGGCAGCAGTTTTCCTGTTTCAGTTTGTTGGATTCAACGTG
TGGTTTGGCTCCGTGGAGTTTGGTGCTTCATGGCAGCAATAGCAAGGTTA
AGGTTTGCCCGATGTCTTATGTCAGCAATCATCGACATGCTTCGGCCCCA
GGACAAGCCCTTGGCTGCCCTGTACGGATTGACATCAACCAAGAACAAGA
GGAACTACTCGGTCTTCGTTTTGTCGACCTCGCCGCTAGCATCCGACTTA
GCCCTGGCTGAAGTCCACTTCAGTGTACTAACGGGGTGGACGCGACACTA
CAGCGGTGGAGACACAGGAGGTTTTCAACTTGCATATCCGAAACCCCGAT
AGTAAATGGTGAGAAATTAAAATGACTGACACAGCAGAGTGGGGAGGACC
TTCGATTGCCCGTCTTTTTTTGAGACATATTTGGTAGTTCCTCTTCGTCG
TCTGAAGATAAGTACTCCCGCGCCCCAAAAAAGCAATATGTGTACACTAT
GGAGTCGGAACCCGAATTTAGTTTGTACTGCTTGATCGAGAAACTCCGTG
AATACCTCTCTATCTAGTCGTCCCTGTACAGAAAATGGTTTCCTCGGAAG
CCAACTCGATGTTGACGTAGATTGTTGATGTTGAGATACCCCCCCCCACC
CCCTTCTTCTGCTCTGAAAAACAAATCTTGAGACGAACTACATTGCGTCC
AGTTGCACGATCGTATTGCAAGCGCTTCGTGATTGTACCCTATGCATCCA
TCGCTCCGGTACTAAGTACCGCCGCATCCACTTTCACCGGTTGCAGGTGA
CGATGGACACGCCCGGCCCCAGCGGCAGCACACGGGTGAACAAGGTTGCA
GTCCGTGGGCACGACGCTACGAGCGATAAGGTGTTTCGAGACATCTGTGA
CGGGATCAAGGAGATCCACACCGTCGACCAGCTTCATGAGGTGAGCAAAA
AGCACATTATCAGCACAACGCTAGCAGACACGCGTTTGTTGTTTTATTGT
GAGGGCCTACGATGTGTGGTGCATATATCACTGGGGGGGGGGGGTCGATT
CCACTTCAGCGAGTTTCGGAATACGTGTCTGACAGGTAAAATCACTCCCG
ATAGGTATATCCGGGTTGCCTGAAAGGCCACGGGATTCGTTGTTGTTCTT
GTTTCGGAATTTGTATGTAGCATCGGCGATGACCTGTTCTGGCACGTCCG
CACTTGCCCCCACACACAAATATCGTCGCGCGAGTGTTGTGTTGAGTTGG
GTTGTGTTTCAAGCGACTTCAACTAGCGACCTCTTCGTGGTGCATATGGC
AGGCTCTGCTCGCAGTGGGCAGTGTGCGACCCTGCGAAGATATGCGTCAC
AACCATCTGCTGCCGTACGGACCCAAGGTCGACGCGGGCTTTGACCATCT
TGTCCGCCTAGCACACCGGAGCGGAAAGCCGAACGATGGCTCAGGCTCCC
TCGGTTACCTGCCGGGGTTTGGTTCGACCTCAGTGTCAGCTACCTTGCAG
ATGGTCGACGAGGAGTACGTGTTCTTCCACGACACGTGCAGTGTTCTGGC
GGATTCGACGTCGACCGCCACACAAGGACAGTGCAAGGGATGTACGTCAT
CTGGCAAAGGGAGATTCGTCGCGAGAGCGGAGCGCGCTGCTTCTGGCGAG
TTCGACATGAGCACCCCCAACGTACTTCTGACTACCGTCCAGAAGGTACA
TGTGGCATCTCTCATGTTGTGTCGTCATTGCTTCCTCTTGTGTTGAGCTC
TCAGTCTGGAGCTCGAAGACGCCTGCTTGTCACGTAACCCTCTCCAATGG
GGCTGTGCTGGTGCGGCTGGGTACTCTCTTACAGAAAACCTCAGAGTTTG
CCCCCGGCTCTGTGTTGCCCCCCCACCCAAAATGCTGAGTCATTCCCGGG
ACTTTTTTTGTTTGTTTTCAATGTATCCCCCCCGTAGAGATAGCCAAGGG
AGATCATTTTGGGCAGAAACGTTAGATATCCTCGGGGTTACTCCGTATGC
GTTATCGCTTTGTTCTGCTGCACAGGACCAGAAGCTGGCCGTCCAGGCGT
CGATGGCGAAGGTCCCGAAGAAGAAGGTGACGCGGCAGAAGGCTTTGAGG
TGTAGGGAGAACGACATCGTCATCAGCGGAGAGGAAGGGGCTAAACTTTA
CGAAGCTCTGCAGAAGCCTGAGATCGTGCAGATGACCAGTCGGCTGGAGG
AGGGAAGCATAGCCCGGGCAGTGGTGGAGGCAAGCTTGTATTGAAAATGC
TGGCACGCCATACAGCAGTAGTTTTTTTTTGACGCAAACGACATCGAAAT
AGGTGCCGTAAGTTAGCTTGATCTTCCCCCACTTTTTGACCTCCCGCCGC
CCGCCCCCCCTATTTCCCTCTCTGCCTTGAAGCTTTATTTCTTTGATTTC
CCCCCGGGGATCAGTTTTGAAAAAAAAACTGTATCCTCCCGGACTAGTAT
TTTCTTGGCATCCCCCCGGGGGTTGTGTGTACTCCCCTACCTTTCGTGAT
GGTTTCCGGACCTTTCCTGGTGTCGTTGGAGGATTTGGCATCATACGAAC
GGGTTCCGCCACCGCCAGATGCTGTATGTGGGTATGTGTGAGTGTGAGCG
TGTTTTTTGTCTTCACCTCGGGCAGATTTGTCCCCAGGGTAGTATTCGAA
AAAAAATCCCCCCCTTGATACTTGCCCCCCGGGGATGTGCATTAAAAAAA
ATGTAAAGTGCACCTCCCGGAAATCAACACAACTTACGATAGTTTCGCCA
GCCGCGTGTGACGTTGAATGTGTTCGTCTAACGGGCGCGCGCCTTTAGAT
GGTATATCTCACATCATTCCGTCGTTTGTGTTTTGTTCGTGTACATCCCT
CTGCGCCGTACAACAGGAGAACAACAGGTGGAATCGCAGCAATGGGGCTG
CGAAGGGATGGCGCTTCGATGCCAAGGTGCTTCGTTGGGCCTGCTACGTG
CAGGCCAAGATCGGTGGAGGAGGGTACGACATCCTGCGTGAAGTTTTGCA
CCTTCCGCACCGCGACCACCTGCGCAAGCTCAAGGCATCTAGTGCTCCTC
TAAAGTCGGGACTCCAGGAACACAACATTGAGGTGCGCAGTTCGTCATTC
TGCCGTTTACCAAGCACGAACAACTTGTTGTGCCACACGAAGCTTCCTCC
GTCTGGAATGCTCGAGTGCGTTGACGTCGTCAAGTGTGCCGCAGGTAAAC
GCAAAACAGTCGGGAGCTGGGTCAGTGTTTTAATACATCCCCTTTCTTTT
TGCGTTCCAGGCGGAAGGCAAGATCGCTGCTGCTAACAACGCGAGCCGTT
TCGAGCTTCTCGGTATGCTCGTTTGGGATCTGATGCACATCAACGCGAAC
GGCTTTACTTTTCGCCCCAACGGAGGGGGGTTGAGTGGTTTGATCGACAC
CCACTCGTTCTTCAACCCGGTGTGGGCGGTCAAGGGAGTAGACGCAAACA
TCGGGTTGGAGAAGACCTTGGAAACCTTCGTGGCTACCCAGTACCTTGAG
GTGCGCACGCGTCCATGTAGGGTTTACAAGTGCTGAAGCCAGGTATTTAT
TTCGCTTTTGCTCCCTCCAACGCCAATCGGGCGGCCTTCCCAACATTTCC
TACCAGCAACCAGCCTCCTTTCCAGAGCTCCCAATGTATGTTACTCATGA
AATAATTTTTGTAGATTTGCAGGTTTTCTGGGTGAGTCTTGGGAACCCAG
AGTACAAGTTCGTCGTCTGGCGGGAAGCAGTGCGTTCACTCAACGCCGAC
TACATCGCGACGATGTTGCACGAGGTCATGCTTGCCCTGGCCCAAGCACA
CGAGGACAAGGTCTTGGATGTGGTGTGCACGGTGTGCGATGTTGCGGCTG
AACAGTGAGTACACGCTGACAGAGATTATGAAGTATACGCGCGTTCACAA
CGTAGTGCGATATTATGGGAAAAGAGGCATCAGCATGCGTTATTTTTTTT
TTGTGTCTTCCGTTGCGGGTTAGGATTGTGCCAAAGCGCCTTGCCTCCTC
GTATTGCGTGTTCTGGCGACGTGTTGTCGTGACGACCACTACCACACCCA
TCTGGTAAATTGTGTGGCAAACTAACTCTGTGCTGCAATCCCTTTCCGCT
TCTCGCACGCTCCCAGCCGATCGTACCAGTCCAACATGGCGACGGAAACG
TTCGGTAGGTGGGCGAGACAGGGAGGGTCCAGGTCCGCGAGGTTCGAGGC
TAAGTTCAAAGACTTCCCAACAGCCTCCCAACACCCGTACCACCTCAGAC
CGGTTTTCAACCTTTCTGATCCCATGCACCTTGTCAAGAAGTTGGTAAAT
GCCCTTTGGCACAGCGACCTTGCCTGGAAGAAGCGGAGCCTGGGGAAGCT
GTTCTACAACGAAGCAACAGGGGAGGAAGAATGGGCGGACTTCTCCCTCA
AGACACTCGAGCGCGTGTACGAGCAAGAGGAGATGGGCGGTGGGACCAAG
ACGGTGGAGGAGCTGGTTGCGGACCTTCAGCGCTTTCGAAGCCTCACGCC
CGAGCAGTTCCGGCGGACGAGCCACAACTGCATGAGCGTTCAGCTTTCGT
GCAAGGTATGGTTTCGGTCAAAGTAAACAAAGGCTTGATCAAGTATTTTT
CGGAGATATTATTGACGGAGGGGGAGGGGGGCGCGGTTGGGCTCGAGAGG
CTGATGGTGATCCTCGAGTGGTTCTCGGAGTGGGAGGAACAAGCGCACTA
CGCGAGCGGCGCAGCTAACTGGAAGGAGAAGTTCATCACGTGGCAGTCGT
GGACGGACATGCGCACGACTATCCTGGGCTTTGTGGCCATGTCGCGATAC
ATCTTCTCCGACAACGACCTCGTTGCTCCCTCGTCCGGTCCCAAATGTTT
TCTGTACCCCAGGATGTTCAGCCAGGCAAGGGCAACCCGCAACCCGCTTT
GTTCTGTGCTTGTTCCCAAACTCTTGCGTCGTGAGATTTGACCTTCGAAG
TTCACCTCCGTGACACCTCCGTCGAGCGTGTGCCTTCAACTAAATAAGTG
TTTTTCCTGTCGAACCTCTCGGACGATTGGATATTCTCTACTTGTGTTTT
GAAATCGTACATGCCCTCTTCGGTCTGTTTGTCCTTGTTTTCTCCAAAGC
AGGACATTTTGGAGCACAGATTCGCGCACATCCGGCAGGCGATGGGGTGC
CACAAGAACCCCACGAAGGAACTAGCGTTCGAAGCGGGAAGGGTAGGCGA
CCTCGTGCGGTTTTTGCATGGCAGCAGTGGGCGCCGCAATGCATCTCGTT
CAAACAGTGTTTTCCGGTTGCCAGACATGTGTGGAAACTCAGCGCGAGCT
TCGTTGCCCGTAAGCGCATCGGAGAGAGCGGATGGGTTTAGATCGCCCAC
ATGCGACGAGCCGTGTCACGTTCTCGAGGCACGGAGTGTCCTCACAGAGT
GTGGGCCGGAGTGGTACGCCTTGCACGTATGGAGTGTGTGTGTATTTTGT
TGATGCGGTTGATGGCCGCTTTTACCTTTCTTCTGCCGTGCGCTTTCTAT
TGTGTCCTCG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig101:442691..450950+

>mRNA_C-linearis_contig101.748.1 ID=mRNA_C-linearis_contig101.748.1|Name=mRNA_C-linearis_contig101.748.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4344bp|location=Sequence derived from alignment at C-linearis_contig101:442691..450950+ (Chordaria linearis ClinC8C monoicous)
ATGATGGTGACGATGGACACGCCCGGCCCCAGCGGCAGCACACGGGTGAA
CAAGGTTGCAGTCCGTGGGCACGACGCTACGAGCGATAAGGTGTTTCGAG
ACATCTGTGACGGGATCAAGGAGATCCACACCGTCGACCAGCTTCATGAG
GTGACGATGGACACGCCCGGCCCCAGCGGCAGCACACGGGTGAACAAGGT
TGCAGTCCGTGGGCACGACGCTACGAGCGATAAGGTGTTTCGAGACATCT
GTGACGGGATCAAGGAGATCCACACCGTCGACCAGCTTCATGAGGCTCTG
CTCGCAGTGGGCAGTGTGCGACCCTGCGAAGATATGCGTCACAACCATCT
GCTGCCGTACGGACCCAAGGTCGACGCGGGCTTTGACCATCTTGTCCGCC
TAGCACACCGGAGCGGAAAGCCGAACGATGGCTCAGGCTCCCTCGGTTAC
CTGCCGGGGTTTGGTTCGACCTCAGTGTCAGCTACCTTGCAGATGGTCGA
CGAGGAGTACGTGTTCTTCCACGACACGTGCAGTGTTCTGGCGGATTCGA
CGTCGACCGCCACACAAGGACAGTGCAAGGGATGTACGTCATCTGGCAAA
GGGAGATTCGTCGCGAGAGCGGAGCGCGCTGCTTCTGGCGAGTTCGACAT
GAGCACCCCCAACGTACTTCTGACTACCGTCCAGAAGGCTCTGCTCGCAG
TGGGCAGTGTGCGACCCTGCGAAGATATGCGTCACAACCATCTGCTGCCG
TACGGACCCAAGGTCGACGCGGGCTTTGACCATCTTGTCCGCCTAGCACA
CCGGAGCGGAAAGCCGAACGATGGCTCAGGCTCCCTCGGTTACCTGCCGG
GGTTTGGTTCGACCTCAGTGTCAGCTACCTTGCAGATGGTCGACGAGGAG
TACGTGTTCTTCCACGACACGTGCAGTGTTCTGGCGGATTCGACGTCGAC
CGCCACACAAGGACAGTGCAAGGGATGTACGTCATCTGGCAAAGGGAGAT
TCGTCGCGAGAGCGGAGCGCGCTGCTTCTGGCGAGTTCGACATGAGCACC
CCCAACGTACTTCTGACTACCGTCCAGAAGGACCAGAAGCTGGCCGTCCA
GGCGTCGATGGCGAAGGTCCCGAAGAAGAAGGTGACGCGGCAGAAGGCTT
TGAGGTGTAGGGAGAACGACATCGTCATCAGCGGAGAGGAAGGGGCTAAA
CTTTACGAAGCTCTGCAGAAGCCTGAGATCGTGCAGATGACCAGTCGGCT
GGAGGAGGGAAGCATAGCCCGGGCAGTGGTGGAGGACCAGAAGCTGGCCG
TCCAGGCGTCGATGGCGAAGGTCCCGAAGAAGAAGGTGACGCGGCAGAAG
GCTTTGAGGTGTAGGGAGAACGACATCGTCATCAGCGGAGAGGAAGGGGC
TAAACTTTACGAAGCTCTGCAGAAGCCTGAGATCGTGCAGATGACCAGTC
GGCTGGAGGAGGGAAGCATAGCCCGGGCAGTGGTGGAGGAGAACAACAGG
TGGAATCGCAGCAATGGGGCTGCGAAGGGATGGCGCTTCGATGCCAAGGT
GCTTCGTTGGGCCTGCTACGTGCAGGCCAAGATCGGTGGAGGAGGGTACG
ACATCCTGCGTGAAGTTTTGCACCTTCCGCACCGCGACCACCTGCGCAAG
CTCAAGGCATCTAGTGCTCCTCTAAAGTCGGGACTCCAGGAACACAACAT
TGAGGAGAACAACAGGTGGAATCGCAGCAATGGGGCTGCGAAGGGATGGC
GCTTCGATGCCAAGGTGCTTCGTTGGGCCTGCTACGTGCAGGCCAAGATC
GGTGGAGGAGGGTACGACATCCTGCGTGAAGTTTTGCACCTTCCGCACCG
CGACCACCTGCGCAAGCTCAAGGCATCTAGTGCTCCTCTAAAGTCGGGAC
TCCAGGAACACAACATTGAGGCGGAAGGCAAGATCGCTGCTGCTAACAAC
GCGAGCCGTTTCGAGCTTCTCGGTATGCTCGTTTGGGATCTGATGCACAT
CAACGCGAACGGCTTTACTTTTCGCCCCAACGGAGGGGGGTTGAGTGGTT
TGATCGACACCCACTCGTTCTTCAACCCGGTGTGGGCGGTCAAGGGAGTA
GACGCAAACATCGGGTTGGAGAAGACCTTGGAAACCTTCGTGGCTACCCA
GTACCTTGAGGCGGAAGGCAAGATCGCTGCTGCTAACAACGCGAGCCGTT
TCGAGCTTCTCGGTATGCTCGTTTGGGATCTGATGCACATCAACGCGAAC
GGCTTTACTTTTCGCCCCAACGGAGGGGGGTTGAGTGGTTTGATCGACAC
CCACTCGTTCTTCAACCCGGTGTGGGCGGTCAAGGGAGTAGACGCAAACA
TCGGGTTGGAGAAGACCTTGGAAACCTTCGTGGCTACCCAGTACCTTGAG
GTTTTCTGGGTGAGTCTTGGGAACCCAGAGTACAAGTTCGTCGTCTGGCG
GGAAGCAGTGCGTTCACTCAACGCCGACTACATCGCGACGATGTTGCACG
AGGTCATGCTTGCCCTGGCCCAAGCACACGAGGACAAGGTCTTGGATGTG
GTGTGCACGGTGTGCGATGTTGCGGCTGAACAGTTTTCTGGGTGAGTCTT
GGGAACCCAGAGTACAAGTTCGTCGTCTGGCGGGAAGCAGTGCGTTCACT
CAACGCCGACTACATCGCGACGATGTTGCACGAGGTCATGCTTGCCCTGG
CCCAAGCACACGAGGACAAGGTCTTGGATGTGGTGTGCACGGTGTGCGAT
GTTGCGGCTGAACACCGATCGTACCAGTCCAACATGGCGACGGAAACGTT
CGGTAGGTGGGCGAGACAGGGAGGGTCCAGGTCCGCGAGGTTCGAGGCTA
AGTTCAAAGACTTCCCAACAGCCTCCCAACACCCGTACCACCTCAGACCG
GTTTTCAACCTTTCTGATCCCATGCACCTTGTCAAGAAGTTGGTAAATGC
CCTTTGGCACAGCGACCTTGCCTGGAAGAAGCGGAGCCTGGGGAAGCTGT
TCTACAACGAAGCAACAGGGGAGGAAGAATGGGCGGACTTCTCCCTCAAG
ACACTCGAGCGCGTGTACGAGCAAGAGGAGATGGGCGGTGGGACCAAGAC
GGTGGAGGAGCTGGTTGCGGACCTTCAGCGCTTTCGAAGCCTCACGCCCG
AGCAGTTCCGGCGGACGAGCCACAACTGCATGAGCGTTCAGCTTTCGTGC
AAGCCGATCGTACCAGTCCAACATGGCGACGGAAACGTTCGGTAGGTGGG
CGAGACAGGGAGGGTCCAGGTCCGCGAGGTTCGAGGCTAAGTTCAAAGAC
TTCCCAACAGCCTCCCAACACCCGTACCACCTCAGACCGGTTTTCAACCT
TTCTGATCCCATGCACCTTGTCAAGAAGTTGGTAAATGCCCTTTGGCACA
GCGACCTTGCCTGGAAGAAGCGGAGCCTGGGGAAGCTGTTCTACAACGAA
GCAACAGGGGAGGAAGAATGGGCGGACTTCTCCCTCAAGACACTCGAGCG
CGTGTACGAGCAAGAGGAGATGGGCGGTGGGACCAAGACGGTGGAGGAGC
TGGTTGCGGACCTTCAGCGCTTTCGAAGCCTCACGCCCGAGCAGTTCCGG
CGGACGAGCCACAACTGCATGAGCGTTCAGCTTTCGTGCAAGGACATTTT
GGAGCACAGATTCGCGCACATCCGGCAGGCGATGGGGTGCCACAAGAACC
CCACGAAGGAACTAGCGTTCGAAGCGGGAAGGGTAGGCGACCTCGTGCGG
TTTTTGCATGGCAGCAGTGGGCGCCGCAATGCATCTCGTTCAAACAGTGT
TTTCCGGTTGCCAGACATGTGTGGAAACTCAGCGCGAGCTTCGTTGCCCG
TAAGCGCATCGGAGAGAGCGGATGGGTTTAGATCGCCCACATGCGACGAG
CCGTGTCACGTTCTCGAGGCACGGAGTGTCCTCACAGAGTGTGGGCCGGA
GTGGTACGCCTTGCACGTATGGAGTGTGTGTGTATTTTGTTGAGACATTT
TGGAGCACAGATTCGCGCACATCCGGCAGGCGATGGGGTGCCACAAGAAC
CCCACGAAGGAACTAGCGTTCGAAGCGGGAAGGGTAGGCGACCTCGTGCG
GTTTTTGCATGGCAGCAGTGGGCGCCGCAATGCATCTCGTTCAAACAGTG
TTTTCCGGTTGCCAGACATGTGTGGAAACTCAGCGCGAGCTTCGTTGCCC
GTAAGCGCATCGGAGAGAGCGGATGGGTTTAGATCGCCCACATGCGACGA
GCCGTGTCACGTTCTCGAGGCACGGAGTGTCCTCACAGAGTGTGGGCCGG
AGTGGTACGCCTTGCACGTATGGAGTGTGTGTGTATTTTGTTGA
back to top