prot_C-linearis_contig101.737.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig101.737.1
Unique Nameprot_C-linearis_contig101.737.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length559
Homology
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Match: D7FJI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI2_ECTSI)

HSP 1 Score: 556 bits (1433), Expect = 7.040e-191
Identity = 381/583 (65.35%), Postives = 400/583 (68.61%), Query Frame = 0
Query:    1 MSSKRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLADIKAKIEHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIADMDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALKIRDEEEGSTARSSLAVVAEETKAKPA--MTIAAGQDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESQVXXXXTGATAAA------------APAVETGLDNGSAGESSAPKMDSAAAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--MTYASLAKSWATVAADSGVAVGAPASASPSGTGNGVAASNGNSSGGWGGAPD--------AAAVGGAGLTIEQPAGQPGSGM-GHGSRPSSA-GKGQKGSGAYIPHHASPAVAASAXXXXEAAAAGNGEIMPATSLFVRKVDMTIDREEMIAHFSAYGDVTGISMNPTRGYAFIDYRNNECVQTALSTKEHYVNRKLLVVEERHSPMLQRNSRGEHGGXXXXXXXXXXXXXXXXXXXX-DRRSAGXXXXXDRPDGSKDGGGSGYKSRGRAE 556
            MS+KRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGL DIKAKI+HLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIA+ DPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALK RDEE+GSTARS+L    E +K +     T+AA                                          ESQV                       APA   GLDNGSA ++ A K+  +   A+            XXXXXXXXXXXXXXXXX  MTYASLAKSWATVAADSG                                           A  GGA LTIEQP GQPG G+  HGSRPSSA GKGQKG GAYIPHHASPAVAASAXXXXEAAAAGNGEIMPATSLFVRKVDMTIDR+EMIAHFSAYG+VTGISMNPTRGYAFIDYR NECVQ ALSTKEHYVNRKLLVVEERHSPM+QRNSRGEHGG    XXXXXX    X      DRR  G     DRPDG KDGG   Y++RGRAE
Sbjct:    1 MSTKRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIANTDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALKARDEEDGSTARSALPPAEESSKPESVGEETVAAAVTQVHVQDTPVPQQTTASPVATAAVPESSPPAMAAGAAPPSESQVAASTDAXXXXXXXXXXXXXXXXXAPAAVAGLDNGSADKTPAAKVPPSPVGASTPAESTETAAAEXXXXXXXXXXXXXXXXXXXMTYASLAKSWATVAADSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAVAGGAVLTIEQPVGQPGPGVVQHGSRPSSATGKGQKGPGAYIPHHASPAVAASAXXXXEAAAAGNGEIMPATSLFVRKVDMTIDRDEMIAHFSAYGEVTGISMNPTRGYAFIDYRTNECVQIALSTKEHYVNRKLLVVEERHSPMVQRNSRGEHGGGRGGXXXXXXRVSSXRDGRDGDRRPTGRGGR-DRPDGPKDGG---YRARGRAE 579          
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Match: A0A6H5L110_9PHAE (NTF2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L110_9PHAE)

HSP 1 Score: 315 bits (807), Expect = 2.400e-99
Identity = 212/334 (63.47%), Postives = 224/334 (67.07%), Query Frame = 0
Query:    1 MSSKRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLADIKAKIEHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIADMDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALKIRDEEEGSTARSSLAVVAEETKAKPA--MTIAAGQDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESQVXXXXTG-------------ATAAAAPAVETGLDNGSAGESSAPKMDSAAAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----MTYASLAKSWATVAADSG 314
            MS++RGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGL DIKAKI+HLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIA+ DPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALK RDEE+GS   S+LA   E  K +     T+AA                         XX               ESQV                         PA   GLDNGSA  + A K+  +  AA+            XXXXXXXXXXXXXXXXX     MTYASLAKSWATVAADSG
Sbjct:    1 MSTRRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIANTDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALKARDEEDGS---SALAPAEESLKPESVGEETVAAAVTQVHVRDTSAPQQTTASPVATAAXXESSPPSMAAGAAPPSESQVAVPADADXXXXXXXXXXXXXXXXXXPAALAGLDNGSADRTPAAKVPPSPVAASTPVESTEKAAAEXXXXXXXXXXXXXXXXXXXXXXMTYASLAKSWATVAADSG 331          
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Match: A0A835Z9L7_9STRA (NTF2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L7_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.690e-51
Identity = 91/142 (64.08%), Postives = 109/142 (76.76%), Query Frame = 0
Query:    8 PAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLADIKAKIEHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIADMDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAAL 149
            P+ AVVG HF+KQYYG+VL  KP EL RFY ++STFCHA G+ +E+PV+GL +IKAKI  LGL  ATVDL CGSVDAQPS   G++LMVTGSI +     RQF QTFFLA Q Q N RHNY V NDIFR LD +P+V++AA+
Sbjct:   10 PSAAVVGGHFIKQYYGQVLPNKPTELFRFYHEKSTFCHADGSSQEDPVTGLENIKAKILSLGLADATVDLDCGSVDAQPSVDDGIILMVTGSIKLQGQRLRQFAQTFFLALQLQKNGRHNYVVMNDIFRLLDTIPDVLKAAV 151          
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Match: A0A835YRG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRG6_9STRA)

HSP 1 Score: 187 bits (475), Expect = 2.000e-48
Identity = 87/138 (63.04%), Postives = 106/138 (76.81%), Query Frame = 0
Query:   12 VVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLADIKAKIEHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIADMDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAAL 149
            VVG HF+K +YGEVL +KP+ELHRFY ++STFCHA G K+E+PV GL +IK KI  LGL  ATVDL CGSVD Q S+ G +LLMVTG+IT+    PRQF QTF LA   Q + RHN+FV ND+FR LD +PEV++AAL
Sbjct:   11 VVGHHFIKSFYGEVLPRKPLELHRFYSEQSTFCHAEGNKQEQPVMGLENIKEKIRGLGLADATVDLDCGSVDIQASQNGSILLMVTGAITLRGQAPRQFAQTFLLATHRQMDGRHNFFVLNDVFRLLDTIPEVLEAAL 148          
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Match: A0A7S2GVT4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GVT4_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.680e-30
Identity = 77/174 (44.25%), Postives = 107/174 (61.49%), Query Frame = 0
Query:    2 SSKRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLADIKAKIEHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIADMDPRQFCQTFFLARQHQDNDRHN--YFVRNDIFRFLDVLPEVVQAALKIRDEEEGS-TARSSLAVVAEETK 172
            +++RG P+PAVVG  F+K+YY ++L+  P  ++RFY+D+S      GT  E+PV G+  IKAKI   G   A  +L  GS+DAQPS+ GGVLLMVTG+IT  +  PRQF Q+FFLA Q      +   YFV ND FR +   P V+ + + ++     S TA  S+A  A  T+
Sbjct:    7 ATRRGRPSPAVVGKQFIKRYY-DLLTTDPSLMYRFYQDQSAMVCGEGTHSEDPVMGMEQIKAKIAERGCLNAIFNLEHGSIDAQPSKDGGVLLMVTGTITKKNAPPRQFVQSFFLAEQQNSIKTYPPAYFVLNDTFRIVTPPPNVINSYMSVKQSTNYSATAAKSVAPAASATE 179          
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Match: A0A7S2DLV2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLV2_9STRA)

HSP 1 Score: 131 bits (329), Expect = 3.160e-29
Identity = 71/154 (46.10%), Postives = 101/154 (65.58%), Query Frame = 0
Query:    1 MSSKRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLADIKAKI----EHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIA-DMDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAAL 149
            M  K+G P+P  V   FVKQYY ++  K+P +L RFYK+ES F H++G +E + ++G+ +IKA I         G   VDL CGSVDAQPS+ GGV+L+VTG++T   D   R F Q F+LA Q  + ++ +YFV ND FR+LD+ P ++ AA+
Sbjct:    1 MPPKKGHPSPRQVAQSFVKQYY-DMYMKQPKDLFRFYKEESHFLHSAGNQERKSITGIEEIKAAIASGYSSNVAGQVQVDLECGSVDAQPSKDGGVILIVTGAMTSKEDKHSRMFVQNFYLAPQ--ETEQASYFVLNDAFRYLDISPSIMDAAM 151          
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Match: A0A0W8CRK0_PHYNI (NTF2 domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CRK0_PHYNI)

HSP 1 Score: 127 bits (319), Expect = 6.840e-29
Identity = 76/168 (45.24%), Postives = 107/168 (63.69%), Query Frame = 0
Query:    8 PAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLADIKAKIEHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITI-ADMDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEV--VQAALKIRDEEEGSTARSSLAVVAEETK 172
            P+P+ VG+ F++QYY   L+K+P  LHRFYK ES +CH  G+  EEP++G   I  +I   G  GA VDL  GS+D Q S GGGVL++VTG +T+ +   P+ F QTFFLA Q +      YFV ND  RFL+ LP    V+ A +++++E G T  + ++ V EET+
Sbjct:   50 PSPSTVGNTFMRQYY-HFLAKEPQSLHRFYKAESRWCHGLGSHMEEPIAGQRAINDQILKRGYAGARVDLDAGSIDCQNSHGGGVLVLVTGVMTLRSSPTPKPFVQTFFLAVQPK-----GYFVLNDCLRFLE-LPGAAPVEVAPEVKEKENGKT-ETPMSPVKEETR 209          
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Match: A0A485LI37_9STRA (Aste57867_20882 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LI37_9STRA)

HSP 1 Score: 130 bits (327), Expect = 7.920e-29
Identity = 70/134 (52.24%), Postives = 88/134 (65.67%), Query Frame = 0
Query:    7 APAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLADIKAKIEHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIADMDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDV 140
            AP P  VG+ FVKQYY  +L++ P +LHRFYKDESTF H SG++ EE VSG A I + I      GA V L  GS+D Q S+ GGV+++VTG IT+ +  P  F QTFFLA QH     + YFV ND+ RFL +
Sbjct:    8 APHPTTVGNTFVKQYYS-LLTESPDKLHRFYKDESTFSHGSGSQLEESVSGQASINSTILKKNYYGAVVQLDHGSIDCQASQAGGVVVLVTGVITLQNSAPAHFVQTFFLAVQH-----NGYFVLNDVLRFLHI 135          
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Match: A0A6G0XNH0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XNH0_9STRA)

HSP 1 Score: 127 bits (319), Expect = 7.260e-28
Identity = 68/134 (50.75%), Postives = 87/134 (64.93%), Query Frame = 0
Query:    7 APAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLADIKAKIEHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIADMDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDV 140
            AP P  VG+ FVKQYY  +L++ P  LHRFYKDESTF H SG++ EE VSG A I + I      GA V L  GS+D Q S+ GGV+++VTG IT+ +  P  F QTFFLA Q +      +FV ND+ RFL++
Sbjct:    8 APHPTTVGNAFVKQYYS-LLTESPETLHRFYKDESTFSHGSGSQPEESVSGQASINSTILKKRYSGAVVQLDHGSIDCQASQAGGVVVLVTGVITLQNSAPTHFVQTFFLAVQEK-----GFFVLNDVLRFLNI 135          
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Match: A0A7S3Y115_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y115_HETAK)

HSP 1 Score: 116 bits (291), Expect = 5.690e-27
Identity = 69/139 (49.64%), Postives = 89/139 (64.03%), Query Frame = 0
Query:    7 APAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLADIKAKIEHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIAD-MDPRQ-FCQTFFLA-----RQHQDNDRHNYFVRNDIFRFL 138
            +P P+ V + FV  YY  VLSKKP EL RFYK+ES+F   +  +  EPV+G+  IK KI  LGL GA V++G GSVDAQ S  GGV+++VTG+I +A    P Q F QTFFLA     +Q +     +YFV ND  RF+
Sbjct:    5 SPPPSTVATSFVAHYY-RVLSKKPAELFRFYKEESSFTFGAPGEAAEPVTGIEAIKTKITGLGLEGAKVEVGQGSVDAQASRDGGVVMLVTGTIALATGQQPAQAFAQTFFLAPQVVVQQGRTAPVPSYFVLNDTLRFV 142          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.737.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJI2_ECTSI7.040e-19165.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L110_9PHAE2.400e-9963.47NTF2 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A835Z9L7_9STRA1.690e-5164.08NTF2 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A835YRG6_9STRA2.000e-4863.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2GVT4_9STRA1.680e-3044.25Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2DLV2_9STRA3.160e-2946.10Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0W8CRK0_PHYNI6.840e-2945.24NTF2 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A485LI37_9STRA7.920e-2952.24Aste57867_20882 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XNH0_9STRA7.260e-2850.75Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S3Y115_HETAK5.690e-2749.64Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 421..487
e-value: 1.6E-9
score: 47.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 422..475
e-value: 2.1E-7
score: 30.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 420..491
score: 11.588
NoneNo IPR availableGENE3D3.10.450.50coord: 4..141
e-value: 4.2E-34
score: 119.5
NoneNo IPR availablePANTHERPTHR10693:SF20AT27578Pcoord: 6..550
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 418..493
e-value: 1.0E-11
score: 46.8
IPR002075Nuclear transport factor 2PFAMPF02136NTF2coord: 13..137
e-value: 2.4E-21
score: 76.5
IPR039539Ras GTPase-activating protein-binding proteinPANTHERPTHR10693RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEINcoord: 6..550
IPR018222Nuclear transport factor 2, eukaryotePROSITEPS50177NTF2_DOMAINcoord: 13..137
score: 23.586
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 416..522
IPR032710NTF2-like domain superfamilySUPERFAMILY54427NTF2-likecoord: 10..137

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:256986..263359 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.737.1mRNA_C-linearis_contig101.737.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig101 256950..263359 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig101.737.1 ID=prot_C-linearis_contig101.737.1|Name=mRNA_C-linearis_contig101.737.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=559bp
MSSKRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTK
EEEPVSGLADIKAKIEHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSI
TIADMDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALK
IRDEEEGSTARSSLAVVAEETKAKPAMTIAAGQDAAAPQKAAAAAAVGAS
PVAAAAVPESTPPSMAMGAAPPSESQVAASTTGATAAAAPAVETGLDNGS
AGESSAPKMDSAAAAATATAQSSEPAAAAPPASPLPPAAPTGPPAPMTYA
SLAKSWATVAADSGVAVGAPASASPSGTGNGVAASNGNSSGGWGGAPDAA
AVGGAGLTIEQPAGQPGSGMGHGSRPSSAGKGQKGSGAYIPHHASPAVAA
SAAAAREAAAAGNGEIMPATSLFVRKVDMTIDREEMIAHFSAYGDVTGIS
MNPTRGYAFIDYRNNECVQTALSTKEHYVNRKLLVVEERHSPMLQRNSRG
EHGGRGGRNGGRGRGTGRDGRDGGDRRSAGGRGGRDRPDGSKDGGGSGYK
SRGRAEPA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR002075NTF2
IPR039539Ras_GTPase_bind_prot
IPR018222Nuclear_transport_factor_2_euk
IPR035979RBD_domain_sf
IPR032710NTF2-like_dom_sf