mRNA_C-linearis_contig101.728.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig101.728.1
Unique NamemRNA_C-linearis_contig101.728.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig101.728.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI)

HSP 1 Score: 368 bits (944), Expect = 3.480e-121
Identity = 217/323 (67.18%), Postives = 249/323 (77.09%), Query Frame = 1
Query:    1 NNNNTNDNNKMNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKET-AAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPTPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNGGNASGDGRPR 960
            NNN  N++N M T  IKINFQG + DV++P+P TLA LQ  IA+ F   +P RS   EAAKD+DLSFTYKDP+GDDIVFDKDSEL LA+RLCP SLEI+AA KE  AA+ PD E RLY +AARNLREYNGVPSMTP KL+KTLAFL+LNP+RLVKQ LAPK LL RM A   N  +    PLG  K NNEDL+ESVAAGMELMS+EDDKKEWNDGFVSVEP   A T++   D+DN    ++K+D  AP  K+N++HKAFIA GIQLRPREVRPLL+ALDVRP RL KLG VDGK LRAML+AEKK A KR+G    G G PR
Sbjct:    7 NNNRDNNDNTMTTSSIKINFQGASRDVNVPAPVTLASLQAVIAAAFDAELPVRSPGGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAMRLCPGSLEISAAGKEKKAAEMPDSEARLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKAEAANNAKVSKVPLGDGK-NNEDLAESVAAGMELMSLEDDKKEWNDGFVSVEP---ADTSSP--DNDN----EEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLQAEKKTAHKRHG---PGHGGPR 316          
BLAST of mRNA_C-linearis_contig101.728.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI)

HSP 1 Score: 368 bits (944), Expect = 2.570e-120
Identity = 210/303 (69.31%), Postives = 237/303 (78.22%), Query Frame = 1
Query:   31 MNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETA-AKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPTPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNG 930
            M T  IKINFQGT+ DV++P P TLA LQ AIA  F   +P RS A EAAKD+DLSFTYKDP+GDDIVFDKDSEL+LA+RLCP SLEI+AA KE   A KPDPE RLY +AARNLREYNGVPSMTP KL+KTLAFL+LNP+RLVKQ LAPK LL RM A   N  +    PLG  K NNEDL+ESVAAGMELMSVEDDKKEWNDGFVSVEP   A T++   D++      +K+D  AP  K+N++HKAFIA GIQLRPREVRPLL+ALDVRP RL KLG V+GK LRAML+AEKK A KR G
Sbjct:    1 MTTSSIKINFQGTSRDVNVPVPVTLASLQAAIAGAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPGSLEISAAGKENKPANKPDPEARLYKIAARNLREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK-NNEDLAESVAAGMELMSVEDDKKEWNDGFVSVEP---ADTSSPGNDNE------EKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAMLQAEKKVAHKRRG 293          
BLAST of mRNA_C-linearis_contig101.728.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE)

HSP 1 Score: 363 bits (933), Expect = 1.740e-118
Identity = 210/312 (67.31%), Postives = 238/312 (76.28%), Query Frame = 1
Query:    1 NNNNTNDNNKMNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETA-AKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPTPAA---PTTAEVVDSDNAAAAKDKDDNTAPKENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKR 924
            NNN  N++  M T  IKINFQG + DV++P+P +LA LQ AIA+ F   +P RS A EAAKD+DLSFTYKDP+GDDIVFDKDSEL LA+RLCPSSLEI+A  KE+  AKKPDPE RLY +AARNLREYNGVPSMT  KLIKTLAFL+LNP+RLVKQ LAPK LL RM A   N  +    PLG  K NNEDL+ESVAAGMELMSVEDDKKEWNDGFVS E   +A   P TA+    DN    ++ D     K++++HKAFI  GIQLRPREVRPLL+ALDVRP RL KLG VDGK LRAML AEKKAA KR
Sbjct:    9 NNNRYNNDKTMTTPSIKINFQGASRDVNVPAPVSLASLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISATLKESEPAKKPDPEARLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK-NNEDLAESVAAGMELMSVEDDKKEWNDGFVSAESDASAAAVPITAKTSTPDNDNEEENNDAAPETKKDLIHKAFITGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLRAEKKAAHKR 319          
BLAST of mRNA_C-linearis_contig101.728.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE)

HSP 1 Score: 360 bits (923), Expect = 5.840e-118
Identity = 214/322 (66.46%), Postives = 242/322 (75.16%), Query Frame = 1
Query:    4 NNNTNDNNKMNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKET-AAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPTPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNGGNASGDGRPR 960
            NN  N++  M T  IKINFQG + DV +P+P TLA LQ AIA+ F   +P RS   EAAKD+DLSFTYKDP+GDDIVFDKDSEL+LALRLCP SLEI+AA KE  A K PD E  LY +AARNLREYNGVPSMTP KL+KTLAFL+LNP+RLVKQ LAPK LL RM A   N  +     LG  K NNEDL+E VAAGME MSVEDDKKEWNDGFVSVEP       AE   SDN    ++++D+ AP  K+N++HKAFIA GIQLRPREVRPLL+ALDVRP RL KLG VDGK LRAML+AEKKAA KR+G    G G PR
Sbjct:   19 NNRYNNDKTMTTSSIKINFQGASRDVSVPAPATLARLQAAIAAVFEVELPVRSLTGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLALRLCPGSLEISAAGKENKATKMPDSEETLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKAETANNAKLSKVRLGDGK-NNEDLAEWVAAGMEFMSVEDDKKEWNDGFVSVEP-------AETSSSDNGN--EEENDDAAPEVKQNLIHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDLRAMLQAEKKAAHKRHG---PGHGGPR 327          
BLAST of mRNA_C-linearis_contig101.728.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE)

HSP 1 Score: 353 bits (907), Expect = 3.110e-114
Identity = 205/312 (65.71%), Postives = 239/312 (76.60%), Query Frame = 1
Query:   31 MNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETAA-KKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPTPAA---PTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNGGNASGD 948
            M T  IKINFQGT+ +V++ +PFTLA LQ  IA+ F   +P RS A EA KD+DLSFTYKDP+GDDIVFDKDSEL+LA+RLCP SLEI+AA KE     KPDPE RLY +AARNLREYNGVPSMT  KLIKTLAFL+LNPRRLVKQ LAPK LL RM A   N  +     LG D  NNEDL+ESVAAGMELMSVEDDKKE N+GFVS +P  +A   P TA+    DN    ++++D+ AP  K+N++H AFIA GIQLRPREVRPLL+ALDVRP RL KLG V+GKYLRAML+AE KAA KR+G + + D
Sbjct:    1 MTTSSIKINFQGTSRNVNVQAPFTLASLQATIAAAFDAELPVRSPAGEATKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPDSLEISAAGKENKPDNKPDPEGRLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPRRLVKQGLAPKNLLARMKAEAANNMKVSKVTLG-DGENNEDLAESVAAGMELMSVEDDKKECNNGFVSAKPDASAAAVPITAKTSSPDNDN--EEENDDAAPEVKKNLIHTAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVNGKYLRAMLQAETKAAHKRHGHDNNND 309          
BLAST of mRNA_C-linearis_contig101.728.1 vs. uniprot
Match: A0A6H5JPU3_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE)

HSP 1 Score: 343 bits (879), Expect = 2.680e-111
Identity = 197/306 (64.38%), Postives = 225/306 (73.53%), Query Frame = 1
Query:   31 MNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKET-AAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPTPAAPTTAEVVDSDNAAAAKDKDDNTAPKENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNGGNASG 945
            M T  IKI FQG + DV++  P  LA LQ AIA+ F   +PARS A EAA D+DLSFTYKDP+GDDIVFDK+SEL LALRLCP SLEI+AA KE  A + PD E +LY +AARNLREYNGVPSMTP KL+KTLAFL+LNP+RLVKQ LAPK LL RM A   N  +    PLG  K NNEDL+ESVAAGMELMSVED KKEWNDGFVSVEP   +    +  + ++AA           K+N++HKAFIA GIQLRPREVRPLL+ALDV P RL KLG V GK LRAML AEKK A KR+G   +G
Sbjct:   19 MTTSSIKITFQGASRDVNVRVPVMLASLQAAIAAAFDVELPARSSAGEAANDTDLSFTYKDPDGDDIVFDKESELQLALRLCPGSLEISAAGKENKATRMPDSEEKLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK-NNEDLAESVAAGMELMSVEDGKKEWNDGFVSVEPAEISFPANDNEEKNDAA--------PEAKKNLIHKAFIAGGIQLRPREVRPLLVALDVLPYRLAKLGLVGGKDLRAMLRAEKKTAHKRHGPGHAG 315          
BLAST of mRNA_C-linearis_contig101.728.1 vs. uniprot
Match: D8LN82_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN82_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 1.060e-100
Identity = 186/283 (65.72%), Postives = 216/283 (76.33%), Query Frame = 1
Query:    7 NNTNDNNKM-NTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETA-AKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVE---PTPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDV 834
            NN ++N+KM  T  IKINFQG + DV++P+P TL  LQ AIA+ F   +P RS A EAAKD+DLSFTYKDP+GDDIVFDKDSEL LA+RLCPSSLEI+AA KE+  A KPDPE RLY +AARNLREYNGVPSMTP KLIKTLAFL+LNP+RLVKQ LAPK LL RM A   N  +    PLG  K NNEDL++SVAAGMELMSVED KKEWNDGFVS E   P  AAP TAE    DN    ++++D+ AP  K+N++HKAFIA GIQLRPRE   LLL + +
Sbjct:    7 NNCDNNDKMMTTSSIKINFQGASRDVNVPAPVTLDSLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISAALKESKPANKPDPEARLYKIAARNLREYNGVPSMTPPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK-NNEDLADSVAAGMELMSVED-KKEWNDGFVSAESDAPAAAAPITAETSSPDNDK--EEENDDAAPEVKKNLIHKAFIAGGIQLRPRE--GLLLGVSI 283          
BLAST of mRNA_C-linearis_contig101.728.1 vs. uniprot
Match: A0A6H5K3J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J2_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.500e-11
Identity = 61/171 (35.67%), Postives = 82/171 (47.95%), Query Frame = 1
Query:  307 KETAAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPTPAAPTTAEVVDSDNAAAAKDKDDNTAPKENVLHKAFIAAGIQLRPREVRPLL 819
            K +  +  +P   LY  AARNL EY+GVPSMT   L KT+  LQL P RLV Q LAPK LL   +AA             GD                    E D ++ ++  VS +    +    ++ + D+ A     D  T   ++ +H  F+AAG+QLRPRE RPLL
Sbjct:   38 KPSCKRAVEPNPLLYKAAARNLCEYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKQLLEGKSAA-------------GDAXX---XXXXXXXXXXXXXXEVDPEQADNNQVSDDSNTNSRDGTDI-EHDHVATQDSIDIETGASKHPIHAVFVAAGVQLRPRETRPLL 191          
BLAST of mRNA_C-linearis_contig101.728.1 vs. uniprot
Match: A0A6H5JCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG1_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.650e-8
Identity = 56/171 (32.75%), Postives = 80/171 (46.78%), Query Frame = 1
Query:  307 KETAAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPTPAAPTTAEVVDSDNAAAAKDKDDNTAPKENVLHKAFIAAGIQLRPREVRPLL 819
            K +  +  +P   ++  AARNLREY+GVPS+TP  L  T+  L+L P RLV Q LAPK LL   + A  + D       GG ++  E  +   +  +   S  D     ND  V          T   +  +  A+           ++ +   F+A G+QLRPRE RPLL
Sbjct:   28 KPSCKRTGEPNPLMFKAAARNLREYHGVPSITPGGLETTMVLLELRPARLVAQGLAPKILLKGNSTAGVDADSTDGS--GGFEAEEEQANNQFSHDLSSNS-SDGGDTGNDNIV----------TQNSIGFEARAS-----------KHPIQAVFVAVGVQLRPRETRPLL 174          
BLAST of mRNA_C-linearis_contig101.728.1 vs. uniprot
Match: A0A6H5KI70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI70_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.540e-6
Identity = 31/47 (65.96%), Postives = 34/47 (72.34%), Query Frame = 1
Query:  346 LYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKAL 486
            LY  AARNLREY+GVPSMT   L KT+  LQL P RLV Q LAPK +
Sbjct:   53 LYKAAARNLREYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKXI 99          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LN66_ECTSI3.480e-12167.18PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN68_ECTSI2.570e-12069.31PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JQ17_9PHAE1.740e-11867.31PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KAY7_9PHAE5.840e-11866.46PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KB69_9PHAE3.110e-11465.71PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPU3_9PHAE2.680e-11164.38PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN82_ECTSI1.060e-10065.72PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K3J2_9PHAE1.500e-1135.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCG1_9PHAE1.650e-832.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI70_9PHAE1.540e-665.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:178291..180518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1269
Cds size1239
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.728.1prot_C-linearis_contig101.728.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig101 178291..180488 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927362.131405-CDS-C-linearis_contig101:178290..1785771622927362.131405-CDS-C-linearis_contig101:178290..178577Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 178291..178577 -
1690879653.3486118-CDS-C-linearis_contig101:178290..1785771690879653.3486118-CDS-C-linearis_contig101:178290..178577Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 178291..178577 -
1622927362.1434412-CDS-C-linearis_contig101:178728..1793951622927362.1434412-CDS-C-linearis_contig101:178728..179395Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 178729..179395 -
1690879653.3589826-CDS-C-linearis_contig101:178728..1793951690879653.3589826-CDS-C-linearis_contig101:178728..179395Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 178729..179395 -
1622927362.152943-CDS-C-linearis_contig101:180203..1804881622927362.152943-CDS-C-linearis_contig101:180203..180488Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 180204..180488 -
1690879653.368602-CDS-C-linearis_contig101:180203..1804881690879653.368602-CDS-C-linearis_contig101:180203..180488Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 180204..180488 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927362.1635535-UTR-C-linearis_contig101:180488..1805181622927362.1635535-UTR-C-linearis_contig101:180488..180518Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 180489..180518 -
1690879653.3773153-UTR-C-linearis_contig101:180488..1805181690879653.3773153-UTR-C-linearis_contig101:180488..180518Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 180489..180518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig101.728.1

>prot_C-linearis_contig101.728.1 ID=prot_C-linearis_contig101.728.1|Name=mRNA_C-linearis_contig101.728.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=413bp
MNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAA
KDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETAAKKP
DPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPK
ALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKE
WNDGFVSVEPTPAAPTTAEVVDSDNAAAAKDKDDNTAPKENVLHKAFIAA
GIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNG
GNASGDGRPRQRMARGCARRWWSPRPSPRPSPRPSARPSPWPSPHKRHGR
HAGGPEEGEDGAGFHRGHPHGPPHKRHGRHAGGPEEGEEGAGFHRGPRHG
MMRVRHARGGRQH
back to top

mRNA from alignment at C-linearis_contig101:178291..180518-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.728.1 ID=mRNA_C-linearis_contig101.728.1|Name=mRNA_C-linearis_contig101.728.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2228bp|location=Sequence derived from alignment at C-linearis_contig101:178291..180518- (Chordaria linearis ClinC8C monoicous)
AACAACAACAACACCAACGACAACAACAAGATGAACACTCGCAAAATCAA GATCAACTTCCAGGGCACCGCTGGCGACGTCGACCTTCCGTCCCCGTTCA CGCTCGCCGGCCTCCAGCAAGCCATCGCTTCAACCTTCGGCACCGGGATG CCCGCTCGCTCCGGCGCTGATGAGGCCGCCAAGGACAGCGACCTGTCCTT CACCTACAAGGACCCTGAGGGCGACGACATCGTGTTCGACAAGGACTCCG AGCTGAGCCTGGCGCTTCGCCTGTGCCCCAGCTCGCTCGAGATCACCGCG GCCGCCAAGGAAACGGTGAGAGACGCTACAAGTACTCGAAACTCATGGAG TACACTGGTACTAGATTTGCGGTAGCTTGTGAGTTGGTTGCAGCGTGAGC GCGTGAGCTCGGTACGTTTGTAGAGAGAGTTGGATCAAAGTAGGCCATGA TCGCTGTAAGCCCGTCTTCACTCTGTCTTTTGAGGCCTGTACTTGGTGCG CCCGACTCCTGTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTCACATTAAA AACCATCCCGGTCCCGTCTCTATCCAGTACCTCCTTCTGTCTCAACCTCT CCGTAATCCATCACTTGACGCGGCCAATTTCCGTGGTCACAAGCTAACTT ACCTCTGTGTACGTACTTTTTTATTTTAATTTGTGTAACACCCGCAACGC GATTCCGGCGCTGCTCGTTGGGAACTCGTCTTCGGATGACCCCTCACGCA CAGACGAAATAAGAAATAAATCGGTAGACGAGAGTCGGTCTCGTGTCGTA TATTGTATCATACCGGTATTTCTTCAAATCGATTGGAGTCTGTGTAGTCA CCAAGCTATCATCGCGTTGATTCAGTGGCGATTTTCCTCTTCTCGAAGCT TTGGGAACTGCTGTGCTTGTTCGCTGTGCTTGTTCATCCTCTCTCCCCGT CACAAGAGTTCGACATCACCAGTACCGTATGTCTGTATCTATCGGCGAAG TTGTGTTACCCCACACCGCTGTAGAGTCTAAACAATCAGTACTTGTACGT GTATTTGACGTTCCTCGTCCTCCCTCCCCTCCCGCTCATTCTTTTCCCCT CTCCCTCTCTTCAACCCTTGCAGGCGGCCAAGAAGCCCGACCCCGAACAC CGGCTGTACACCGTCGCCGCCCGCAACCTCCGCGAGTACAACGGCGTGCC CTCCATGACCCCGAAGAAGCTCATCAAGACCCTGGCGTTCCTCCAGCTCA ACCCGCGCCGCCTCGTCAAGCAGAGCCTGGCCCCCAAGGCGCTGCTGATC CGCATGGCCGCCGCCAAGAAGAACGAGGACGAGGCGCAGCCCCAGCCCCT CGGCGGTGACAAGAGCAACAACGAAGATCTCTCCGAGTCGGTCGCCGCTG GCATGGAGCTGATGAGCGTCGAGGACGACAAGAAGGAGTGGAACGACGGT TTCGTATCCGTCGAACCCACACCCGCCGCCCCTACTACAGCGGAAGTGGT CGACTCCGACAACGCCGCTGCCGCGAAGGACAAGGACGACAATACCGCGC CCAAGGAGAACGTACTCCACAAGGCCTTCATCGCCGCCGGCATCCAGCTC CGCCCCCGCGAGGTCCGGCCCCTGCTTCTCGCCCTGGACGTCCGCCCCCG CCGCCTGGTGAAGCTCGGCTACGTGGACGGCAAGTACCTTCGCGCCATGC TCGAGGCGGAGAAGAAGGCCGCCCCGAAGCGCAACGGCGGTAACGCCAGC GGCGACGGCCGCCCTCGCCAGCGCATGGCTCGGGGCTGCGGTGCTCGCGG CGTCGGTGGGCCGGGCGGCAAGCCGTGCGGCCGGAGGATGATGATGCTGC GTGGCAACCTCCACCCGGTCGCCCACCCGCCCTCGCCCCCCCGTCTTTCA TGGTTGAGGGGGAGGACGGCATGTTCTTCGTGCCGGTCGAGCGCGGCGGT GGTGGTCGCCGCGGCCCTCCCCACGGCCCTCCCCACGGCCCTCCGCACGG CCCTCCCCATGGCCCTCCCCGCACAAGCGCCACGGGCGCCACGCTGGCGG ACCCGAGGAAGGCGAGGACGGGGCTGGGTTCCACCGCGGCCATCCCCACG GCCCCCCGCACAAGCGCCACGGGCGCCACGCCGGCGGGCCCGAGGAAGGC GAGGAAGGTGCTGGCTTCCACCGCGGCCCTCGCCACGGAATGATGAGGGT TCGCCATGCTCGCGGCGGTCGCCAGCAC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig101:178291..180518-

>mRNA_C-linearis_contig101.728.1 ID=mRNA_C-linearis_contig101.728.1|Name=mRNA_C-linearis_contig101.728.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2478bp|location=Sequence derived from alignment at C-linearis_contig101:178291..180518- (Chordaria linearis ClinC8C monoicous)
ATGAACACTCGCAAAATCAAGATCAACTTCCAGGGCACCGCTGGCGACGT
CGACCTTCCGTCCCCGTTCACGCTCGCCGGCCTCCAGCAAGCCATCGCTT
CAACCTTCGGCACCGGGATGCCCGCTCGCTCCGGCGCTGATGAGGCCGCC
AAGGACAGCGACCTGTCCTTCACCTACAAGGACCCTGAGGGCGACGACAT
CGTGTTCGACAAGGACTCCGAGCTGAGCCTGGCGCTTCGCCTGTGCCCCA
GCTCGCTCGAGATCACCGCGGCCGCCAAGGAAACGATGAACACTCGCAAA
ATCAAGATCAACTTCCAGGGCACCGCTGGCGACGTCGACCTTCCGTCCCC
GTTCACGCTCGCCGGCCTCCAGCAAGCCATCGCTTCAACCTTCGGCACCG
GGATGCCCGCTCGCTCCGGCGCTGATGAGGCCGCCAAGGACAGCGACCTG
TCCTTCACCTACAAGGACCCTGAGGGCGACGACATCGTGTTCGACAAGGA
CTCCGAGCTGAGCCTGGCGCTTCGCCTGTGCCCCAGCTCGCTCGAGATCA
CCGCGGCCGCCAAGGAAACGGCGGCCAAGAAGCCCGACCCCGAACACCGG
CTGTACACCGTCGCCGCCCGCAACCTCCGCGAGTACAACGGCGTGCCCTC
CATGACCCCGAAGAAGCTCATCAAGACCCTGGCGTTCCTCCAGCTCAACC
CGCGCCGCCTCGTCAAGCAGAGCCTGGCCCCCAAGGCGCTGCTGATCCGC
ATGGCCGCCGCCAAGAAGAACGAGGACGAGGCGCAGCCCCAGCCCCTCGG
CGGTGACAAGAGCAACAACGAAGATCTCTCCGAGTCGGTCGCCGCTGGCA
TGGAGCTGATGAGCGTCGAGGACGACAAGAAGGAGTGGAACGACGGTTTC
GTATCCGTCGAACCCACACCCGCCGCCCCTACTACAGCGGAAGTGGTCGA
CTCCGACAACGCCGCTGCCGCGAAGGACAAGGACGACAATACCGCGCCCA
AGGAGAACGTACTCCACAAGGCCTTCATCGCCGCCGGCATCCAGCTCCGC
CCCCGCGAGGTCCGGCCCCTGCTTCTCGCCCTGGACGTCCGCCCCCGCCG
CCTGGTGAAGCTCGGCTACGTGGACGGCAAGTACCTTCGCGCCATGCTCG
AGGCGGAGAAGAAGGCCGCCCCGAAGCGCAACGGCGGTAACGCCAGCGGC
GACGGCCGCCCTCGCCAGCGCATGGCTCGGGGCTGCGGCGGCCAAGAAGC
CCGACCCCGAACACCGGCTGTACACCGTCGCCGCCCGCAACCTCCGCGAG
TACAACGGCGTGCCCTCCATGACCCCGAAGAAGCTCATCAAGACCCTGGC
GTTCCTCCAGCTCAACCCGCGCCGCCTCGTCAAGCAGAGCCTGGCCCCCA
AGGCGCTGCTGATCCGCATGGCCGCCGCCAAGAAGAACGAGGACGAGGCG
CAGCCCCAGCCCCTCGGCGGTGACAAGAGCAACAACGAAGATCTCTCCGA
GTCGGTCGCCGCTGGCATGGAGCTGATGAGCGTCGAGGACGACAAGAAGG
AGTGGAACGACGGTTTCGTATCCGTCGAACCCACACCCGCCGCCCCTACT
ACAGCGGAAGTGGTCGACTCCGACAACGCCGCTGCCGCGAAGGACAAGGA
CGACAATACCGCGCCCAAGGAGAACGTACTCCACAAGGCCTTCATCGCCG
CCGGCATCCAGCTCCGCCCCCGCGAGGTCCGGCCCCTGCTTCTCGCCCTG
GACGTCCGCCCCCGCCGCCTGGTGAAGCTCGGCTACGTGGACGGCAAGTA
CCTTCGCGCCATGCTCGAGGCGGAGAAGAAGGCCGCCCCGAAGCGCAACG
GCGGTAACGCCAGCGGCGACGGCCGCCCTCGCCAGCGCATGGCTCGGGGC
TGCGCGCGGCGGTGGTGGTCGCCGCGGCCCTCCCCACGGCCCTCCCCACG
GCCCTCCGCACGGCCCTCCCCATGGCCCTCCCCGCACAAGCGCCACGGGC
GCCACGCTGGCGGACCCGAGGAAGGCGAGGACGGGGCTGGGTTCCACCGC
GGCCATCCCCACGGCCCCCCGCACAAGCGCCACGGGCGCCACGCCGGCGG
GCCCGAGGAAGGCGAGGAAGGTGCTGGCTTCCACCGCGGCCCTCGCCACG
GAATGATGAGGGTTCGCCATGCTCGCGGCGGTCGCCAGCACCGCGGCGGT
GGTGGTCGCCGCGGCCCTCCCCACGGCCCTCCCCACGGCCCTCCGCACGG
CCCTCCCCATGGCCCTCCCCGCACAAGCGCCACGGGCGCCACGCTGGCGG
ACCCGAGGAAGGCGAGGACGGGGCTGGGTTCCACCGCGGCCATCCCCACG
GCCCCCCGCACAAGCGCCACGGGCGCCACGCCGGCGGGCCCGAGGAAGGC
GAGGAAGGTGCTGGCTTCCACCGCGGCCCTCGCCACGGAATGATGAGGGT
TCGCCATGCTCGCGGCGGTCGCCAGCAC
back to top