mRNA_C-linearis_contig101.727.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig101.727.1
Unique NamemRNA_C-linearis_contig101.727.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Match: D8LN84_ECTSI (Ribosomal protein rpl30 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN84_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 1.620e-67
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 
Query:    1 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQGAEA 333
            MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQGAEA
Sbjct:    1 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQGAEA 111
[Close]
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Match: A0A835YXX2_9STRA (Ribosomal protein rpl30 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX2_9STRA)

HSP 1 Score: 180 bits (457), Expect = 3.200e-53
Identity = 87/106 (82.08%), Postives = 100/106 (94.34%), Query Frame = 1 
Query:    1 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILR 318
            MAP KK+KK IES+N RLQLVM+SGKASLGYK T+K MR+++AKM++ISNNCPPLRKSEIEY+A+LAKC VHHY+GSNTDLGTACGKYFRVSVL+ITDAGDSDILR
Sbjct:    1 MAPIKKAKKTIESINTRLQLVMRSGKASLGYKQTLKCMRTSKAKMIIISNNCPPLRKSEIEYYALLAKCNVHHYSGSNTDLGTACGKYFRVSVLAITDAGDSDILR 106
[Close]
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Match: A0A812PA55_SYMMI (RPL30 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812PA55_SYMMI)

HSP 1 Score: 173 bits (438), Expect = 2.330e-50
Identity = 82/108 (75.93%), Postives = 102/108 (94.44%), Query Frame = 1 
Query:    1 MAP--GKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILR 318
            MAP  GKK+KK +ES+N+RLQLVM+SGKASLGYK+TIK++R+T+AK+V+IS+NCPPLRKSEIEY+AMLAKC VHHY G+N+DLGTACGK++RVS+LS+TD GDSDILR
Sbjct:    1 MAPAAGKKTKKTVESINSRLQLVMRSGKASLGYKTTIKTLRNTKAKLVIISSNCPPLRKSEIEYYAMLAKCTVHHYAGTNSDLGTACGKFYRVSMLSVTDGGDSDILR 108
[Close]
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Match: A0A7S3HF33_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HF33_9STRA)

HSP 1 Score: 165 bits (418), Expect = 2.430e-47
Identity = 76/104 (73.08%), Postives = 99/104 (95.19%), Query Frame = 1 
Query:   10 GKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQ 321
            GKK+KKA+ES+N+++QLVMKSGK +LGYK+TIK++R+ +AKMVLI++N PPLRKSE+EY+AMLAKC VHHY G+N++LGTACGK++RVS++SITDAGDSDILRQ
Sbjct:    9 GKKTKKAVESINSKVQLVMKSGKTALGYKTTIKALRANKAKMVLIASNTPPLRKSEVEYYAMLAKCVVHHYAGNNSELGTACGKFYRVSMVSITDAGDSDILRQ 112
[Close]
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Match: A0A261XVZ6_9FUNG (60S ribosomal protein L30-1 n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XVZ6_9FUNG)

HSP 1 Score: 164 bits (416), Expect = 4.140e-47
Identity = 80/105 (76.19%), Postives = 96/105 (91.43%), Query Frame = 1 
Query:    1 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDIL 315
            MAP KKSKK++ES+N+RLQLVMKSGK +LGYKST+KS+R+ +AK++LI+ NCPPLRKSEIEY+AML+K  VHHYTG+N +LGTACGK FR SVLSITDAGDSDIL
Sbjct:    1 MAPVKKSKKSVESINSRLQLVMKSGKYNLGYKSTLKSVRAGKAKLILIAGNCPPLRKSEIEYYAMLSKTGVHHYTGNNIELGTACGKLFRCSVLSITDAGDSDIL 105
[Close]
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Match: A0A1Y1Z8Q1_9FUNG (60S ribosomal protein n=4 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z8Q1_9FUNG)

HSP 1 Score: 164 bits (415), Expect = 6.220e-47
Identity = 77/106 (72.64%), Postives = 98/106 (92.45%), Query Frame = 1 
Query:    1 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILR 318
            MAP KKSKK++ES+N+RL LVMKSGK++LGYKST+KS+R+ +AK++++S NCPPLRKSEIEY+AML+K +VHHY G+N +LGTACGKYFRV VL+ITDAGDSDIL+
Sbjct:    1 MAPIKKSKKSVESINSRLALVMKSGKSNLGYKSTLKSIRNGKAKLIILSGNCPPLRKSEIEYYAMLSKTSVHHYNGNNIELGTACGKYFRVGVLAITDAGDSDILK 106
[Close]
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Match: A0A7S2USR9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USR9_9STRA)

HSP 1 Score: 165 bits (417), Expect = 1.070e-46
Identity = 81/113 (71.68%), Postives = 99/113 (87.61%), Query Frame = 1 
Query:    1 MAPGKK--SKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQGAEA 333
            MAP KK  SKK +E+MN++LQLVMKSGKASLGYKS+IK++R+ +AK+VL+S NCPPLR+SEIEY+AMLAK  VHHY G+NTDLGTACGKYFRV VL +T+AGDS+ILR   E+
Sbjct:   38 MAPSKKVSSKKTVENMNSQLQLVMKSGKASLGYKSSIKALRNNKAKLVLVSKNCPPLRRSEIEYYAMLAKVGVHHYAGNNTDLGTACGKYFRVGVLCVTNAGDSEILRSIPES 150
[Close]
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Match: A0A7S1BKT7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKT7_9STRA)

HSP 1 Score: 162 bits (410), Expect = 3.370e-46
Identity = 78/110 (70.91%), Postives = 100/110 (90.91%), Query Frame = 1 
Query:    1 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQGAE 330
            MAP KK+KK  ESMN+RL+LVMKSGKA+LGYK+TI+S+RS++AK++L+++NCPPLRKSE+EY+AMLAK  VHHY+G+NT+LGTACGK+F  SVL++ DAGDSDIL  GAE
Sbjct:    1 MAP-KKAKKTTESMNSRLKLVMKSGKATLGYKATIRSLRSSKAKLILVASNCPPLRKSELEYYAMLAKTHVHHYSGNNTELGTACGKFFNCSVLTVLDAGDSDILTVGAE 109
[Close]
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Match: L8GX53_ACACA (60S ribosomal protein, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GX53_ACACA)

HSP 1 Score: 162 bits (410), Expect = 3.580e-46
Identity = 80/107 (74.77%), Postives = 92/107 (85.98%), Query Frame = 1 
Query:    1 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQ 321
            M   KK KKA ES+N+RL LVMKSGK +LGYKST+KS+R  +AK+++IS NCPPLRKSEIEY+AMLAK  VHHYTG+N DLGTACGKYFRVS LSITD GDSDI+RQ
Sbjct:    1 MVSTKKQKKAQESINSRLALVMKSGKYTLGYKSTLKSLRQGKAKLIIISTNCPPLRKSEIEYYAMLAKTGVHHYTGNNIDLGTACGKYFRVSSLSITDPGDSDIIRQ 107
[Close]
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Match: A0A7S2AKD1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AKD1_9STRA)

HSP 1 Score: 163 bits (412), Expect = 3.600e-46
Identity = 78/105 (74.29%), Postives = 95/105 (90.48%), Query Frame = 1 
Query:    1 MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDIL 315
            MAPGKKSK+A+ES+N+RLQLVMKSGKA LGYKST+KS+RS + KMV++SNN PPL+KSEIEY++MLAK  V HY+G+N+DLGTACGKYFRV  +SI DAGDSDI+
Sbjct:   23 MAPGKKSKRAVESINSRLQLVMKSGKAELGYKSTLKSLRSGKCKMVILSNNTPPLKKSEIEYYSMLAKVTVTHYSGTNSDLGTACGKYFRVGTVSIIDAGDSDII 127
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN84_ECTSI1.620e-67100.00Ribosomal protein rpl30 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YXX2_9STRA3.200e-5382.08Ribosomal protein rpl30 n=1 Tax=Tribonema minus Ta... [more]
A0A812PA55_SYMMI2.330e-5075.93RPL30 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S3HF33_9STRA2.430e-4773.08Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A261XVZ6_9FUNG4.140e-4776.1960S ribosomal protein L30-1 n=1 Tax=Bifiguratus ad... [more]
A0A1Y1Z8Q1_9FUNG6.220e-4772.6460S ribosomal protein n=4 Tax=Basidiobolus meristo... [more]
A0A7S2USR9_9STRA1.070e-4671.68Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1BKT7_9STRA3.370e-4670.91Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
L8GX53_ACACA3.580e-4674.7760S ribosomal protein, putative n=1 Tax=Acanthamoe... [more]
A0A7S2AKD1_9STRA3.600e-4674.29Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:173923..176503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.0
Seed ortholog evalue2.2e-54
Seed eggNOG ortholog2880.D8LN84
Preferred nameRPL30
KEGG koko:K02866,ko:K02908
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0001889,GO:0001906,GO:0002181,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006448,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0007275,GO:0007399,GO:0007422,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010259,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016072,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019730,GO:0022613,GO:0022625,GO:0022626,GO:0030627,GO:0031099,GO:0031100,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031640,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033119,GO:0033365,GO:0034248,GO:0034250,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035368,GO:0035821,GO:0036002,GO:0040007,GO:0042254,GO:0042742,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043484,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044364,GO:0044391,GO:0044419,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045727,GO:0045901,GO:0045934,GO:0046483,GO:0046700,GO:0046907,GO:0048024,GO:0048025,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048732,GO:0048856,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0050829,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060255,GO:0061008,GO:0061844,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0097421,GO:0098542,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903311,GO:1903312,GO:1904569,GO:1904571,GO:1990904,GO:2000112
EggNOG free text desc.ribosomal protein
EggNOG OGsCOG1911@1,KOG2988@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons2
Model size1082
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.727.1prot_C-linearis_contig101.727.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig101 173923..175757 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927362.0762193-CDS-C-linearis_contig101:173922..1739431622927362.0762193-CDS-C-linearis_contig101:173922..173943Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 173923..173943 +
1690879653.317739-CDS-C-linearis_contig101:173922..1739431690879653.317739-CDS-C-linearis_contig101:173922..173943Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 173923..173943 +
1622927362.0864134-CDS-C-linearis_contig101:175442..1757571622927362.0864134-CDS-C-linearis_contig101:175442..175757Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 175443..175757 +
1690879653.3283699-CDS-C-linearis_contig101:175442..1757571690879653.3283699-CDS-C-linearis_contig101:175442..175757Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 175443..175757 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927362.0969439-UTR-C-linearis_contig101:175757..1765031622927362.0969439-UTR-C-linearis_contig101:175757..176503Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 175758..176503 +
1690879653.338363-UTR-C-linearis_contig101:175757..1765031690879653.338363-UTR-C-linearis_contig101:175757..176503Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 175758..176503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig101.727.1

>prot_C-linearis_contig101.727.1 ID=prot_C-linearis_contig101.727.1|Name=mRNA_C-linearis_contig101.727.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=112bp
MAPGKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISN
NCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAG
DSDILRQGAEA*
back to top

mRNA from alignment at C-linearis_contig101:173923..176503+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.727.1 ID=mRNA_C-linearis_contig101.727.1|Name=mRNA_C-linearis_contig101.727.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2581bp|location=Sequence derived from alignment at C-linearis_contig101:173923..176503+ (Chordaria linearis ClinC8C monoicous)
ATGGCTCCCGGAAAGAAATCGGTGGGTGTTGGTGGTGGTACTGCCTGCGA
ACGGCACCTCGTCGCTGGTGGAGGCTAGCAGCAGAGTTGCATGGCTGTGG
TCCCTAGACTACGGCCGCCCTTCGCTTGTTTGAGAGTCAAGTGCCTGCGC
GATCCGTGATGGGCGCTCGCCGTACCTTTACTCTATCCCAAGTGGATAGA
AGAGGGCGGGGAGTGTCCACCTCGAGGATAGGCTGACGTAGCTCCTCGTG
TCAACTCAAGTTTCCGAGAGATCCGCGCTTCCAACCTGAAGTGCGGGGAC
GGTTTTCGTGGCCCTGAAAACGTGGTTGGTGCGAAAACGTGCGCGATTGA
CGCGTCCTCACCTTGTTCCCTGTCTATACGGCTGTTTAGCGCTTGCTGTC
GGGACGCAGTTATTTGAATGCGGCGGTTGTGTCTCAGGTCACGCTCGGTG
GTTCAAACTAGACACGCAGACAGGCTTCTTGAGTGCCAAAAATGCGGCGA
GACTACAGAGTGCCACGAGTGACAGGAGAATAACAGCATGTATGATGTAT
GATACAGATGTGGAAGGGTAGTGGACCTTGCTCGCCGTCGCCCGTGTGTG
TTGAAACCACAGGTGGCACTTGTACGGCGATTTGATCTTCGCCCTCTGTG
TGCATTATAAGTTCCTAGATCGAAATGCCATTACTGGAACGTTCGTTGTG
TTGCCTCCCAACAACAACAAACAGAAAAAAAACTGATGGATGACGGGGAT
TCCGTGCGCGCTGGTTTTCGCAGTGCAGTTTGTCCTGACCCTATGTGACT
TGGCCACACCTAGACCACACCGGGTGTATTGAGTTCGAGAGCAGCAAGAA
TAAACCTCGCGATATTCTTCGCGATTGTGTTGATGTTGTGTTGCTGCAAC
TTAGCCCGGAGTTTTACGTTGCGCGTCGCTTAAGCGAACAAACCCGTGAC
TTGACTCCATTTCATACAGTACCCGGACGAGGTGTGGAAGGCGTGCGGGT
ATTGGTCGTTTATTCCAACGCGCGAAAGCGAGTTCAGCAATTTACCGATT
TTGACATTTAAAACGAACATCATACAGCGGGAGTACATCCCGAAATAATA
CGAACACCAGTAGGTTATTTTTGTGGAATGGCTCAATGACACAAACCTGA
ACTCCCCGGCGTGGTCGGTGTAGAGGTGCCATGTCTTTCGTTTTTTGTGT
TAACATGTCGCGAGAGAAATGTCAAGAACTGCTGTTGTGGGATTTAGTCC
TCCGCATTGAACAGGGCGGTGAGCTGAGGCGACCCAGATTTTCCGTGTCC
GGTGTCATATCCTATCGGACCTCGTCGTCTGTTGTTTTACTTGAATGCGA
TCATTCATCCCACGTTTTTACGCTAATTTGTTAGGGACGCAAAGGTGTTT
TAGATACGTGTATTCCCCACAGGCACCGCCGTTCTGATTCAATACCCTGT
CGCCCCTCTGTGCGAACTCTGCCTGTTGGATGTATCTGGTAACCCTGTCT
TGTGATTTTTTTCCGAGCAGAAGAAGGCCATTGAGAGCATGAACGCTCGG
CTGCAGCTGGTGATGAAGTCCGGCAAGGCCTCCCTCGGCTACAAGTCCAC
CATCAAGTCCATGCGCAGCACCCGTGCCAAGATGGTCCTCATCTCCAACA
ACTGCCCGCCCCTCCGCAAGTCGGAGATCGAGTACTTCGCCATGCTCGCC
AAGTGCGCCGTCCACCACTACACGGGCTCCAACACCGATCTCGGAACGGC
CTGCGGAAAGTACTTCCGCGTCTCCGTGCTGTCCATCACGGACGCCGGAG
ACTCGGACATCCTCCGCCAGGGCGCCGAGGCCTAATTTCGTTGAACAACG
TCATGTTCTCTTCTAGAACCTTCTATCGATTGATTGGGCTCATTGATGCG
GAGGAACGAGGATACTCTTGCGACTCGAGTACTGGGTGCCACGAAGAAAG
GAGTTTGGGGTTTGTGCGGTGTCCATCTCGTGTTTTTCCTTGTTCCTTTT
ATCGTGTCTGGTTTTTGTTCCTTGTGAGCGCGTTTCCTCGATTGAAATTT
GGGATGAAGTTGTGGGCTCTCTTTGAGCTTGATCGGCATGGCACGGGAGC
AGGCGTTTGGCAAATTGTTGATACGGCGAGGCGGGTACACAGCTGACGCT
TCTTTAGCGTTGCCGTCCTGTCGTCGTATCTGTTGTGCCTGACAAGGCTC
CACGCGCATCATCAATGGTGTACCGTCTTTTGTTAAGATTGCATGGGGAG
CATTGGGTTGCATGCGGGGGGGCGGGCAACAAAGCAAAGAAGCAGGACAA
CATATATATATATACTTCAATGTCTTTTGTGAGATTTGAGATCCAATTTC
GGCGGTCTCGTGTCTTCACTTTCTACTTCGGAGTATGTGTTTTGTTTTGG
CGAGCGACTACACATGGCGCTGCAAAACAAGTACCCTACGGTTGCGCGAC
GGTTTCGTTCAACCCGTACACCACACCAAACCACACCACGCCATTGTATT
GGGGCATGCATCCGGTTTACATCGGACGTGGAAACTCAGAGCGTTTCCCA
AGGTGTGCATCCTTGATTGCACTGTGGCGCC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig101:173923..176503+

>mRNA_C-linearis_contig101.727.1 ID=mRNA_C-linearis_contig101.727.1|Name=mRNA_C-linearis_contig101.727.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at C-linearis_contig101:173923..176503+ (Chordaria linearis ClinC8C monoicous)
ATGGCTCCCGGAAAGAAATCGATGGCTCCCGGAAAGAAATCGAAGAAGGC
CATTGAGAGCATGAACGCTCGGCTGCAGCTGGTGATGAAGTCCGGCAAGG
CCTCCCTCGGCTACAAGTCCACCATCAAGTCCATGCGCAGCACCCGTGCC
AAGATGGTCCTCATCTCCAACAACTGCCCGCCCCTCCGCAAGTCGGAGAT
CGAGTACTTCGCCATGCTCGCCAAGTGCGCCGTCCACCACTACACGGGCT
CCAACACCGATCTCGGAACGGCCTGCGGAAAGTACTTCCGCGTCTCCGTG
CTGTCCATCACGGACGCCGGAGACTCGGACATCCTCCGCCAGGGCGCCGA
GGCCTAAAAGAAGGCCATTGAGAGCATGAACGCTCGGCTGCAGCTGGTGA
TGAAGTCCGGCAAGGCCTCCCTCGGCTACAAGTCCACCATCAAGTCCATG
CGCAGCACCCGTGCCAAGATGGTCCTCATCTCCAACAACTGCCCGCCCCT
CCGCAAGTCGGAGATCGAGTACTTCGCCATGCTCGCCAAGTGCGCCGTCC
ACCACTACACGGGCTCCAACACCGATCTCGGAACGGCCTGCGGAAAGTAC
TTCCGCGTCTCCGTGCTGTCCATCACGGACGCCGGAGACTCGGACATCCT
CCGCCAGGGCGCCGAGGCCTAA
back to top