prot_C-linearis_contig101.723.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig101.723.1
Unique Nameprot_C-linearis_contig101.723.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length210
Homology
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BLAST of mRNA_C-linearis_contig101.723.1 vs. uniprot
Match: D7G071_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G071_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 1.640e-100
Identity = 162/215 (75.35%), Postives = 173/215 (80.47%), Query Frame = 0 
Query:    1 MRSSRAIAAGAVAVLAVLLCHH-RGQAFFVGNPAAGLLDRAGYSRNQVQAH-----RSAGVIRSRLTATMTMTPETTEDTVSVLNDDGTRKTGEQIREEFFMAALTGQERGLPPGSYLNDTVDEGPDVAQVSVVWQPYEDKVSAPAGSNLLRSALGCGAMVLDNTFCLTGQCEACMAEVDGNVVLSCMVPVPNDGRTDVEALVCDSDAAWDDMMV 209
            M  SRA+AA AVA   V L H  RGQAFFVG PA  L   A YSR           R AGV+R+RLTATM   PE T DTV+VLNDDGTRK+GEQIREEFFMAA+TGQERGLPPGSYLNDTV+ GP V QVSVVWQPYEDKV APAGS+LL+SA  CGAMV+DNTFCLTGQCEACMAEVDG VVLSCMVPVP DGRTDVEALVC+SDAAWDDMMV
Sbjct:    1 MSFSRAVAASAVAAFGVFLSHQQRGQAFFVGTPAVDLRRTAVYSRGLAAGSISKKGRRAGVVRARLTATMA--PEQT-DTVNVLNDDGTRKSGEQIREEFFMAAMTGQERGLPPGSYLNDTVEAGPGVEQVSVVWQPYEDKVLAPAGSSLLKSATECGAMVIDNTFCLTGQCEACMAEVDGEVVLSCMVPVPADGRTDVEALVCNSDAAWDDMMV 212
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.723.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G071_ECTSI1.640e-10075.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..209
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..26
score: 0.71
IPR0360102Fe-2S ferredoxin-like superfamilySUPERFAMILY542922Fe-2S ferredoxin-likecoord: 125..188

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:131907..134836 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.723.1mRNA_C-linearis_contig101.723.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig101 130880..135564 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig101.723.1 ID=prot_C-linearis_contig101.723.1|Name=mRNA_C-linearis_contig101.723.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=210bp
MRSSRAIAAGAVAVLAVLLCHHRGQAFFVGNPAAGLLDRAGYSRNQVQAH
RSAGVIRSRLTATMTMTPETTEDTVSVLNDDGTRKTGEQIREEFFMAALT
GQERGLPPGSYLNDTVDEGPDVAQVSVVWQPYEDKVSAPAGSNLLRSALG
CGAMVLDNTFCLTGQCEACMAEVDGNVVLSCMVPVPNDGRTDVEALVCDS
DAAWDDMMV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0360102Fe-2S_ferredoxin-like_sf