mRNA_C-linearis_contig101.723.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig101.723.1 vs. uniprot
Match: D7G071_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G071_ECTSI) HSP 1 Score: 301 bits (772), Expect = 5.040e-94 Identity = 162/215 (75.35%), Postives = 173/215 (80.47%), Query Frame = 3 Query: 729 MRSSRAIAAGAVAVLAVLLCHH-RGQAFFVGNPAAGLLDRAGYSRNQVQAH-----RSAGVIRSRLTATMTMTPETTEDTVSVLNDDGTRKTGEQIREEFFMAALTGQERGLPPGSYLNDTVDEGPDVAQVSVVWQPYEDKVSAPAGSNLLRSALGCGAMVLDNTFCLTGQCEACMAEVDGNVVLSCMVPVPNDGRTDVEALVCDSDAAWDDMMV 1355
M SRA+AA AVA V L H RGQAFFVG PA L A YSR R AGV+R+RLTATM PE T DTV+VLNDDGTRK+GEQIREEFFMAA+TGQERGLPPGSYLNDTV+ GP V QVSVVWQPYEDKV APAGS+LL+SA CGAMV+DNTFCLTGQCEACMAEVDG VVLSCMVPVP DGRTDVEALVC+SDAAWDDMMV
Sbjct: 1 MSFSRAVAASAVAAFGVFLSHQQRGQAFFVGTPAVDLRRTAVYSRGLAAGSISKKGRRAGVVRARLTATMA--PEQT-DTVNVLNDDGTRKSGEQIREEFFMAAMTGQERGLPPGSYLNDTVEAGPGVEQVSVVWQPYEDKVLAPAGSSLLKSATECGAMVIDNTFCLTGQCEACMAEVDGEVVLSCMVPVPADGRTDVEALVCNSDAAWDDMMV 212 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.723.1 >prot_C-linearis_contig101.723.1 ID=prot_C-linearis_contig101.723.1|Name=mRNA_C-linearis_contig101.723.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=210bp MRSSRAIAAGAVAVLAVLLCHHRGQAFFVGNPAAGLLDRAGYSRNQVQAHback to top mRNA from alignment at C-linearis_contig101:130880..135564- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.723.1 ID=mRNA_C-linearis_contig101.723.1|Name=mRNA_C-linearis_contig101.723.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4685bp|location=Sequence derived from alignment at C-linearis_contig101:130880..135564- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:130880..135564- >mRNA_C-linearis_contig101.723.1 ID=mRNA_C-linearis_contig101.723.1|Name=mRNA_C-linearis_contig101.723.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at C-linearis_contig101:130880..135564- (Chordaria linearis ClinC8C monoicous)back to top |