mRNA_C-linearis_contig101.723.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig101.723.1
Unique NamemRNA_C-linearis_contig101.723.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig101.723.1 vs. uniprot
Match: D7G071_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G071_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 5.040e-94
Identity = 162/215 (75.35%), Postives = 173/215 (80.47%), Query Frame = 3 
Query:  729 MRSSRAIAAGAVAVLAVLLCHH-RGQAFFVGNPAAGLLDRAGYSRNQVQAH-----RSAGVIRSRLTATMTMTPETTEDTVSVLNDDGTRKTGEQIREEFFMAALTGQERGLPPGSYLNDTVDEGPDVAQVSVVWQPYEDKVSAPAGSNLLRSALGCGAMVLDNTFCLTGQCEACMAEVDGNVVLSCMVPVPNDGRTDVEALVCDSDAAWDDMMV 1355
            M  SRA+AA AVA   V L H  RGQAFFVG PA  L   A YSR           R AGV+R+RLTATM   PE T DTV+VLNDDGTRK+GEQIREEFFMAA+TGQERGLPPGSYLNDTV+ GP V QVSVVWQPYEDKV APAGS+LL+SA  CGAMV+DNTFCLTGQCEACMAEVDG VVLSCMVPVP DGRTDVEALVC+SDAAWDDMMV
Sbjct:    1 MSFSRAVAASAVAAFGVFLSHQQRGQAFFVGTPAVDLRRTAVYSRGLAAGSISKKGRRAGVVRARLTATMA--PEQT-DTVNVLNDDGTRKSGEQIREEFFMAAMTGQERGLPPGSYLNDTVEAGPGVEQVSVVWQPYEDKVLAPAGSSLLKSATECGAMVIDNTFCLTGQCEACMAEVDGEVVLSCMVPVPADGRTDVEALVCNSDAAWDDMMV 212
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G071_ECTSI5.040e-9475.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:130880..135564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score302.4
Seed ortholog evalue1.7e-79
Seed eggNOG ortholog2880.D7G071
Hectar predicted targeting categorysignal peptide
EggNOG OGs2F1MW@1,2T2MF@2759
Ec32 ortholog descriptionBeta-grasp domain
Ec32 orthologEc-05_004050.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size2385
Cds size630
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927361.4767904-UTR-C-linearis_contig101:130879..1319061622927361.4767904-UTR-C-linearis_contig101:130879..131906Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 130880..131906 -
1690879652.8486953-UTR-C-linearis_contig101:130879..1319061690879652.8486953-UTR-C-linearis_contig101:130879..131906Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 130880..131906 -
1622927361.546959-UTR-C-linearis_contig101:134836..1355641622927361.546959-UTR-C-linearis_contig101:134836..135564Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 134837..135564 -
1690879652.9258761-UTR-C-linearis_contig101:134836..1355641690879652.9258761-UTR-C-linearis_contig101:134836..135564Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 134837..135564 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927361.4866025-CDS-C-linearis_contig101:131906..1319671622927361.4866025-CDS-C-linearis_contig101:131906..131967Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 131907..131967 -
1690879652.8687744-CDS-C-linearis_contig101:131906..1319671690879652.8687744-CDS-C-linearis_contig101:131906..131967Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 131907..131967 -
1622927361.4975317-CDS-C-linearis_contig101:132396..1325601622927361.4975317-CDS-C-linearis_contig101:132396..132560Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 132397..132560 -
1690879652.8837507-CDS-C-linearis_contig101:132396..1325601690879652.8837507-CDS-C-linearis_contig101:132396..132560Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 132397..132560 -
1622927361.510962-CDS-C-linearis_contig101:132885..1330141622927361.510962-CDS-C-linearis_contig101:132885..133014Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 132886..133014 -
1690879652.894676-CDS-C-linearis_contig101:132885..1330141690879652.894676-CDS-C-linearis_contig101:132885..133014Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 132886..133014 -
1622927361.5243247-CDS-C-linearis_contig101:133665..1337651622927361.5243247-CDS-C-linearis_contig101:133665..133765Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 133666..133765 -
1690879652.9045932-CDS-C-linearis_contig101:133665..1337651690879652.9045932-CDS-C-linearis_contig101:133665..133765Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 133666..133765 -
1622927361.534637-CDS-C-linearis_contig101:134660..1348361622927361.534637-CDS-C-linearis_contig101:134660..134836Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 134661..134836 -
1690879652.9153543-CDS-C-linearis_contig101:134660..1348361690879652.9153543-CDS-C-linearis_contig101:134660..134836Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 134661..134836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.723.1prot_C-linearis_contig101.723.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig101 131907..134836 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig101.723.1

>prot_C-linearis_contig101.723.1 ID=prot_C-linearis_contig101.723.1|Name=mRNA_C-linearis_contig101.723.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=210bp
MRSSRAIAAGAVAVLAVLLCHHRGQAFFVGNPAAGLLDRAGYSRNQVQAH
RSAGVIRSRLTATMTMTPETTEDTVSVLNDDGTRKTGEQIREEFFMAALT
GQERGLPPGSYLNDTVDEGPDVAQVSVVWQPYEDKVSAPAGSNLLRSALG
CGAMVLDNTFCLTGQCEACMAEVDGNVVLSCMVPVPNDGRTDVEALVCDS
DAAWDDMMV*
back to top

mRNA from alignment at C-linearis_contig101:130880..135564-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.723.1 ID=mRNA_C-linearis_contig101.723.1|Name=mRNA_C-linearis_contig101.723.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4685bp|location=Sequence derived from alignment at C-linearis_contig101:130880..135564- (Chordaria linearis ClinC8C monoicous)
AGGTGACCTCACCCCCCTTCTCTTAGTGTGAGAGCATGGACCCAGCGCTC
GAGTCTGTGCGTGTGCACTCGCCCTTGACTTGAGGCAACATGCGTACACA
GCAGTAGGCACTAATGGCGTGCTTTGTGTGTCCGAAAAGCGCGCTGCGTG
CACCTAAAATATATAAGCTCTCGCTGTAGGGCATAGATCTACATAGTCTA
CACCTCGACATCATGTTGTTCGCGGAAGAGTCGAAGTTTCCTCGTCGATG
TGCCTCTCTCTCTCTCACTCTCGTGAGCTGCTGCTATTGCCTTTCTGCTG
GGCGGTTGGCGGCTTCCGTGGAGCGCTATTGCATAGCTTGTGGTTGGAGA
GCGTAGAACTGCTGTTGTCAAGTGTAGATTTGAACGTCTTTTGTATGAAG
GAAAAACTCGGTCGATCAGCGCATATTTAATTTTTAATTCCCCCGCTCCT
CTCTGTCGATCTTCTCTCGTGCTTGTTTACCTGCACGCCGCCGTCTGCTT
TTCAGCGAAAGACAGCAGTGCGCACCGTCTCCGAGCACCTCCTTTATGAC
ACAACCTTTTGTAGTTGCGTCATTGGCGGCTTAAAATCAGGAATAGACTG
TAGACTACGTCTCCTTTCCTTGGCGTCGTGCACAGTTCGCGACTGCTGTA
CTTAGGTACTCCTGCTGCACCTCTCCCAGTTCTGTTCCCATCACTAGACG
TCAGTTGCTGCAGCGGCACAAGCTTTAAATGAGGTCTTCCAGGGCAATCG
CGGCGGGTGCCGTGGCGGTGTTGGCGGTGCTCTTGTGCCACCACCGTGGG
CAGGCGTTCTTCGTTGGGAACCCGGCCGCTGGGCTGCTGGATCGAGCAGG
CTACTCGAGGAATCAAGTGCAGGCGCATCGATCAGCAGGCGTTATCCGCT
CCAGGTGGGTACTTGTACAAGCTGCCTGTGACAATCATCGTATCTCTCAC
TGCGATCTCGATCGGTTACCATGTATGATACGCGCATATTTATGGACCAA
GAACAGCCCCTACAGCAGTACTGTGGTTCGACACGTGTATCATATTTTCT
TGTTCCCTTTTGACCGCCACTTCAATGTTTGGTTCGTGAGCACCTTGACT
CGCAAGCTGGACAGTCCTCCGCTGCTGTGTAGGCTGGCCCTTCACGCGAT
ATTGGTCCGCGCCTCATTGCTGGCGTGCAGCGCTAAGAACTTTCGTGTTG
TACCTACTGGGGTTTTGATTGTTGACCATGCATGCGGGTTGTGTGGGTGC
ACGCATATTGTCAGCGCTTACAAACGTATGCAGGAGGTTCTTTGTCAACC
GGCTGTCTTGTCAACCAAAAGGGCCATACAATTGACCAGCCTTGTACCGT
TAGCAAAACTGTCTTCGAAGAGGGTGCCGTCGTTAGCACACCCTCTCCGC
TCGGTAAGAAAAATGTCAAGCATGCTGATGTTCGTGACCCTGCCCTGGAC
CACGATAGGGTTTCCTCGCTTCAACAGCGGCGTCCGGGGTTGTGGCCCGA
CATATTGTGCTCGCAATAACCTTGCATCTTCGTTTGATGAGCAGCAGTGA
AGCATGCTATCACGTCCACACATATGCTACTACAGTCAACGACCCCGCTC
ACATTAAAAGGAGATAATTTGGACTGGCTGGGAAGAATACTGCTGTGCAT
CTGTTTGGGTGAACTGCTGGACGAAAGATGCTTGTTCTTGTCAAAAGGGA
CGTATGTATCCGGCCTGAAGTCCATGAGCCTCGCCCAATTTGTTCGCATC
CGCCCCACACCTTCACGTGGTGGTTAATGATTGTGGTTGCGTGTTCCAGA
TTGACGGCTACGATGACGATGACGCCAGAAACAACGGAAGATACAGTGAG
CGTGCTGAACGATGACGGCACCAGGAAGACAGGGGAGCAGATCCGAGAGG
TGAGGAACATACCTTGTTCCATACTTCTTTGTGGAATACTCACAGCAGCC
GCAGTAGACACGCAGCAGAAGCAGTGGCCGTAGCGTGTAGCGTATGTCGT
CGTTAGCGTGTTGTCGTCACGAAGAACTCCTGCACAAAGCGGAGGGTAGG
TCTATTGGATGCGATGCCACGATTTACACAACCATAAAATTCAATTGTGT
TAACGTTGTCGTGCGCTGCTTGTTACAAAAGGTTGTCAACAAACGTATTT
TTAATAGTTGCGCAGGACTTTGTTGTGGTTGGGCTTGTAAATGCTCTGCA
ATATACACTGGTATGGAGTACATCGTTCGTCGAGAACGACTGAGCCTTTC
TCCCCTTCAACCCGGAAGCAATAGCCCGCAGCATGGGTGGCAGAGAGACC
TCGAGGTAGTGTGAGGATGTTTTCTGAGTATGAAGACGAATCCCACCTGT
AAGGCCAAACTACCCTCGCCATAGAGGGTGAGAGAAAGAAAAACTGAAAC
TTAAAACTTGTTTAGACTAGGGCCAGCTGCGCGAAAACGAAGGGGGGTAA
ACGGGATGTGTAACTAGAAAAAAATGGAGTTTCATTTCAATGTCAATGTG
CCAACACGCCGTCAACGTTGTGGCTCTGCTGCAAACACCCATTACGGCAG
GAGTTTTTCATGGCAGCGCTGACGGGCCAAGAGCGAGGGTTGCCGCCGGG
GTCTTATCTCAACGACACTGTCGACGAAGGGCCCGATGTGGCTCAAGTTT
CCGTCGTATGGCAGCCTTACGAGGACAAGGTGAGCGGGCCGGGCCCGCTG
GCTTCACGTTCACAACTGTGAACGTTCCTATGAAAAACGTTCGGGCGAAG
TTGTACCCACCCGTGTGTTGTGTTCCGTTGATTCTCGGTGCACTGCCTGC
CTTGCTGTATCGGTTTTGTCGCTTGCTTGCCTGTTTTAGTCTATCGTAAA
TTTAGCTATTGCTTCCCTCAGGCGCTGTACCCCAGCCGGAAGTCAACGTA
GCTTTCTGTGTTTTTTTCTTTCAAAGCACAATTTTTTTTGTACTGACGAC
ACGACAGCGTTTTTCTCGCTAGGAGCAACCTTAACACCCCCCCCCCCAAA
GTAGGTATCTGCCCCGGCAGGGTCTAACTTGCTTAGGAGCGCACTCGGCT
GCGGAGCGATGGTGTTAGACAACACCTTCTGTTTGACGGGCCAGTGCGAG
GCATGCATGGCTGAGGTGGACGGAAATGTGGTACTGTCCTGCATGGTGCC
TGTGCCCAATGATGGAAGGTGTGAAAAAAATAAGCGACGATGACGTTGCT
GTGAAACAATTTGATCGTCCCGCCCTCTCCCCCTAGAACGACCTGGACTG
TTAGCTGAAATTGGTGAGGTCTGGAATGACAAGCCCGTGCAATGGTCGCC
CGGCACCTGGCGACACAAACATCTCAACACATCTCAGGGTCCATGTCACA
TCCTACGTGACAATTCGTCGTAGCGATGGTGAATGGTGGGTTTGACACCT
GTGGCCATGCCAGTGCCAATCAGTGCTCGTGGTGAGGATGGTTGGGAAAT
GGTCTACCGGGTACACGGTCGTGCACACATACGTCTGGCAAACCAAGCTG
CCTCCCGGTTTTTGTCTCGCCACCAGAATTCTCTTCAGCCTGTTCTGTTT
TTGCAATGTCTTCTCCGTTCTTTATCTCTCAATCTTGTGTATTTCAGGAC
CGATGTGGAGGCCCTGGTGTGCGATTCCGACGCCGCTTGGGACGACATGA
TGGTGTAAGCGCGTTGACCTTCTTTTGGCGGCGTTACCGGATGCCAGGGG
AATCCTGTACGAAGCAAGCGGTTGGGTTGAAGGAGATCTACAGTAGCGGT
TGGGTTGAAGAGACGCATGTGTGGGATCTGCGTCTTTTCCATGTGATTCA
GAGAACTGAGACGTGCTAACCTCCGAATAGTCAAGTCGATAGTGCAATGT
TGCGTAACACTCAAGACCCCCCTTTAGACACTGGCGCGGATGCGTCGATA
CAGATTTTCCACGTTTTGTTTAGGCGAAGGTTGTCCTGCTCTTGAAAACG
TATCTACTGCTGTGCAGAGGAAATCGCCTCTTTGTTCTGTCTTGCGGTGT
TGTATTTTGGCCTCTGTTTTTGCGTTTTTCTGGGACCTCATTTCAGATTG
TACGGTTATGTCCATGGGGTGCTACATACTCAGAGAGACGACGCTGCCCT
GATTTTGTCTAATTGGGCATAGGCGGGCGTCGCATTTGTTTTGTTTGTCC
TGTACTTCTCCGTTTGCCCGGCGTCTGTTGCTGTTTTGCCGTTGGTCGGC
TATTTCGTTGTTCTTTGGGTGCTGTTTTCTGTTTTGTGCGAGAGCACGGT
ACAGCAGAAGTCATGATGAGAGCAGCCGCTGGTACAGCAGTAGTCACACG
ATGGCATGCACGGCAGGAATATCTGCGCCTAATTGTTACTTGGCTGGAGT
TTCAGCTGTTGCCCGCCTATTTCGTGAGGGGGTCCCAACGTGCAAATGTG
TTTCATGTTGGCGTTTCCATCAACAAATCTCAACCGCTTGTAAATCAAAT
TCAAATCTTGATCTTTTCACGAGCATGATGACTACTGCTGTAGATGCGCG
GTACCATGTAGGTTTTGTCTTGGTCTCGTGCAACTGGTCGTTGTGGACTA
CCAATGGCGGTTGGAGTTTCAGCTGTTGCCCGCCTTTTTCGTGAGGGGGT
TCTTACGTGCAAATGTGTTTCATGTTCGCGTTTCCATCAACAAATCTCAA
CCGCTTGTCAATCAAATTCAAATCTTAATCTTTTC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig101:130880..135564-

>mRNA_C-linearis_contig101.723.1 ID=mRNA_C-linearis_contig101.723.1|Name=mRNA_C-linearis_contig101.723.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at C-linearis_contig101:130880..135564- (Chordaria linearis ClinC8C monoicous)
ATGAGGTCTTCCAGGGCAATCGCGGCGGGTGCCGTGGCGGTGTTGGCGGT
GCTCTTGTGCCACCACCGTGGGCAGGCGTTCTTCGTTGGGAACCCGGCCG
CTGGGCTGCTGGATCGAGCAGGCTACTCGAGGAATCAAGTGCAGGCGCAT
CGATCAGCAGGCGTTATCCGCTCCAGATGAGGTCTTCCAGGGCAATCGCG
GCGGGTGCCGTGGCGGTGTTGGCGGTGCTCTTGTGCCACCACCGTGGGCA
GGCGTTCTTCGTTGGGAACCCGGCCGCTGGGCTGCTGGATCGAGCAGGCT
ACTCGAGGAATCAAGTGCAGGCGCATCGATCAGCAGGCGTTATCCGCTCC
AGATTGACGGCTACGATGACGATGACGCCAGAAACAACGGAAGATACAGT
GAGCGTGCTGAACGATGACGGCACCAGGAAGACAGGGGAGCAGATCCGAG
AGATTGACGGCTACGATGACGATGACGCCAGAAACAACGGAAGATACAGT
GAGCGTGCTGAACGATGACGGCACCAGGAAGACAGGGGAGCAGATCCGAG
AGGAGTTTTTCATGGCAGCGCTGACGGGCCAAGAGCGAGGGTTGCCGCCG
GGGTCTTATCTCAACGACACTGTCGACGAAGGGCCCGATGTGGCTCAAGT
TTCCGTCGTATGGCAGCCTTACGAGGACAAGGAGTTTTTCATGGCAGCGC
TGACGGGCCAAGAGCGAGGGTTGCCGCCGGGGTCTTATCTCAACGACACT
GTCGACGAAGGGCCCGATGTGGCTCAAGTTTCCGTCGTATGGCAGCCTTA
CGAGGACAAGGTATCTGCCCCGGCAGGGTCTAACTTGCTTAGGAGCGCAC
TCGGCTGCGGAGCGATGGTGTTAGACAACACCTTCTGTTTGACGGGCCAG
TGCGAGGCATGCATGGCTGAGGTGGACGGAAATGTGGTACTGTCCTGCAT
GGTGCCTGTGCCCAATGATGGAAGGTATCTGCCCCGGCAGGGTCTAACTT
GCTTAGGAGCGCACTCGGCTGCGGAGCGATGGTGTTAGACAACACCTTCT
GTTTGACGGGCCAGTGCGAGGCATGCATGGCTGAGGTGGACGGAAATGTG
GTACTGTCCTGCATGGTGCCTGTGCCCAATGATGGAAGGACCGATGTGGA
GGCCCTGGTGTGCGATTCCGACGCCGCTTGGGACGACATGATGGTGTAAG
ACCGATGTGGAGGCCCTGGTGTGCGATTCCGACGCCGCTTGGGACGACAT
GATGGTGTAA
back to top