mRNA_C-linearis_contig101.721.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig101.721.1
Unique NamemRNA_C-linearis_contig101.721.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig101.721.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE)

HSP 1 Score: 371 bits (952), Expect = 1.550e-115
Identity = 236/408 (57.84%), Postives = 263/408 (64.46%), Query Frame = 1
Query:    1 NNNXXXXXXKMNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETA-AKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEP---APAAPTTAEVVDSDNAAAAKDKDDNTAPKENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKR--NGGNASG------------DGPGPRQRMARGCGARGVGGPGGKPCGRRMMMLRGNLHPVAHPPSPPPSFMVEGEDGMFFVPVERGGGGRRGPPH 1170
            NNN       M T  IKINFQG + DV++P+P +LA LQ AIA+ F   +P RS A EAAKD+DLSFTYKDP+GDDIVFDKDSEL LA+RLCPSSLEI+A  KE+  AKKPDPE RLY +AARNLREYNGVPSMT  KLIKTLAFL+LNP+RLVKQ LAPK LL RM A   N  +    PLG  K NNEDL+ESVAAGMELMSVEDDKKEWNDGFVS E    A A P TA+    DN    ++ D     K++++HKAFI  GIQLRPREVRPLL+ALDVRP RL KLG VDGK LRAML AEKKAA KR  +G N               D      RMA                        G  HP A PP  PP+    G D MF     RGG GR G PH
Sbjct:    9 NNNRYNNDKTMTTPSIKINFQGASRDVNVPAPVSLASLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISATLKESEPAKKPDPEARLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK-NNEDLAESVAAGMELMSVEDDKKEWNDGFVSAESDASAAAVPITAKTSTPDNDNEEENNDAAPETKKDLIHKAFITGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLRAEKKAAHKRCDHGNNXXXXXXXXXXXXXXXDXXXXXHRMA------------------------GRPHPFAPPPPSPPAHQEVG-DAMFAA---RGGRGRHGSPH 387          
BLAST of mRNA_C-linearis_contig101.721.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI)

HSP 1 Score: 366 bits (940), Expect = 8.260e-115
Identity = 210/313 (67.09%), Postives = 239/313 (76.36%), Query Frame = 1
Query:    1 NNNXXXXXXKMNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKET-AAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNG 930
            NNN       M T  IKINFQG + DV++P+P TLA LQ  IA+ F   +P RS   EAAKD+DLSFTYKDP+GDDIVFDKDSEL LA+RLCP SLEI+AA KE  AA+ PD E RLY +AARNLREYNGVPSMTP KL+KTLAFL+LNP+RLVKQ LAPK LL RM A   N  +    PLG  K NNEDL+ESVAAGMELMS+EDDKKEWNDGFVSVEPA  +       D+DN    ++K+D  AP  K+N++HKAFIA GIQLRPREVRPLL+ALDVRP RL KLG VDGK LRAML+AEKK A KR+G
Sbjct:    7 NNNRDNNDNTMTTSSIKINFQGASRDVNVPAPVTLASLQAVIAAAFDAELPVRSPGGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAMRLCPGSLEISAAGKEKKAAEMPDSEARLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKAEAANNAKVSKVPLGDGK-NNEDLAESVAAGMELMSLEDDKKEWNDGFVSVEPADTSSP-----DNDN----EEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLQAEKKTAHKRHG 309          
BLAST of mRNA_C-linearis_contig101.721.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI)

HSP 1 Score: 368 bits (944), Expect = 1.570e-114
Identity = 210/303 (69.31%), Postives = 236/303 (77.89%), Query Frame = 1
Query:   31 MNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETA-AKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNG 930
            M T  IKINFQGT+ DV++P P TLA LQ AIA  F   +P RS A EAAKD+DLSFTYKDP+GDDIVFDKDSEL+LA+RLCP SLEI+AA KE   A KPDPE RLY +AARNLREYNGVPSMTP KL+KTLAFL+LNP+RLVKQ LAPK LL RM A   N  +    PLG  K NNEDL+ESVAAGMELMSVEDDKKEWNDGFVSVEPA  +        +DN    ++K+D  AP  K+N++HKAFIA GIQLRPREVRPLL+ALDVRP RL KLG V+GK LRAML+AEKK A KR G
Sbjct:    1 MTTSSIKINFQGTSRDVNVPVPVTLASLQAAIAGAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPGSLEISAAGKENKPANKPDPEARLYKIAARNLREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK-NNEDLAESVAAGMELMSVEDDKKEWNDGFVSVEPADTSSPG-----NDN----EEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAMLQAEKKVAHKRRG 293          
BLAST of mRNA_C-linearis_contig101.721.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE)

HSP 1 Score: 358 bits (920), Expect = 8.430e-112
Identity = 209/312 (66.99%), Postives = 235/312 (75.32%), Query Frame = 1
Query:    4 NNXXXXXXKMNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKET-AAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNG 930
            NN       M T  IKINFQG + DV +P+P TLA LQ AIA+ F   +P RS   EAAKD+DLSFTYKDP+GDDIVFDKDSEL+LALRLCP SLEI+AA KE  A K PD E  LY +AARNLREYNGVPSMTP KL+KTLAFL+LNP+RLVKQ LAPK LL RM A   N  +     LG  K NNEDL+E VAAGME MSVEDDKKEWNDGFVSVEPA       E   SDN    ++++D+ AP  K+N++HKAFIA GIQLRPREVRPLL+ALDVRP RL KLG VDGK LRAML+AEKKAA KR+G
Sbjct:   19 NNRYNNDKTMTTSSIKINFQGASRDVSVPAPATLARLQAAIAAVFEVELPVRSLTGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLALRLCPGSLEISAAGKENKATKMPDSEETLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKAETANNAKLSKVRLGDGK-NNEDLAEWVAAGMEFMSVEDDKKEWNDGFVSVEPA-------ETSSSDNGN--EEENDDAAPEVKQNLIHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDLRAMLQAEKKAAHKRHG 320          
BLAST of mRNA_C-linearis_contig101.721.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE)

HSP 1 Score: 353 bits (906), Expect = 2.010e-108
Identity = 206/312 (66.03%), Postives = 239/312 (76.60%), Query Frame = 1
Query:   31 MNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETAA-KKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEP---APAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNGGNASGD 948
            M T  IKINFQGT+ +V++ +PFTLA LQ  IA+ F   +P RS A EA KD+DLSFTYKDP+GDDIVFDKDSEL+LA+RLCP SLEI+AA KE     KPDPE RLY +AARNLREYNGVPSMT  KLIKTLAFL+LNPRRLVKQ LAPK LL RM A   N  +     LG D  NNEDL+ESVAAGMELMSVEDDKKE N+GFVS +P   A A P TA+    DN    ++++D+ AP  K+N++H AFIA GIQLRPREVRPLL+ALDVRP RL KLG V+GKYLRAML+AE KAA KR+G + + D
Sbjct:    1 MTTSSIKINFQGTSRNVNVQAPFTLASLQATIAAAFDAELPVRSPAGEATKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPDSLEISAAGKENKPDNKPDPEGRLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPRRLVKQGLAPKNLLARMKAEAANNMKVSKVTLG-DGENNEDLAESVAAGMELMSVEDDKKECNNGFVSAKPDASAAAVPITAKTSSPDNDN--EEENDDAAPEVKKNLIHTAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVNGKYLRAMLQAETKAAHKRHGHDNNND 309          
BLAST of mRNA_C-linearis_contig101.721.1 vs. uniprot
Match: A0A6H5JPU3_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE)

HSP 1 Score: 347 bits (889), Expect = 3.320e-107
Identity = 228/379 (60.16%), Postives = 262/379 (69.13%), Query Frame = 1
Query:   31 MNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKET-AAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNG-GNASGDGPGPRQRMARGCGARG-VGGPGGKPCGRRMMMLRGNLHPVAHPPSPPPSFMVEG---EDGMFFVPVERG 1143
            M T  IKI FQG + DV++  P  LA LQ AIA+ F   +PARS A EAA D+DLSFTYKDP+GDDIVFDK+SEL LALRLCP SLEI+AA KE  A + PD E +LY +AARNLREYNGVPSMTP KL+KTLAFL+LNP+RLVKQ LAPK LL RM A   N  +    PLG  K NNEDL+ESVAAGMELMSVED KKEWNDGFVSVEPA  +        +DN    ++K+D  AP  K+N++HKAFIA GIQLRPREVRPLL+ALDV P RL KLG V GK LRAML AEKK A KR+G G+A     G  +RMA   G RG  GG    P G  ++M  G++ P A P SP       G   E G   VP+ RG
Sbjct:   19 MTTSSIKITFQGASRDVNVRVPVMLASLQAAIAAAFDVELPARSSAGEAANDTDLSFTYKDPDGDDIVFDKESELQLALRLCPGSLEISAAGKENKATRMPDSEEKLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK-NNEDLAESVAAGMELMSVEDGKKEWNDGFVSVEPAEISFPA-----NDN----EEKND-AAPEAKKNLIHKAFIAGGIQLRPREVRPLLVALDVLPYRLAKLGLVGGKDLRAMLRAEKKTAHKRHGPGHAGLQHLGHVERMAH-SGPRGPTGGFARGPAG--LIMRVGSVRPGAGP-SPGSGSGASGRTPEAGANVVPLGRG 382          
BLAST of mRNA_C-linearis_contig101.721.1 vs. uniprot
Match: D8LN82_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN82_ECTSI)

HSP 1 Score: 312 bits (799), Expect = 9.190e-96
Identity = 185/283 (65.37%), Postives = 212/283 (74.91%), Query Frame = 1
Query:    4 NNXXXXXXKMNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETA-AKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVE---PAPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDV 834
            NN       M T  IKINFQG + DV++P+P TL  LQ AIA+ F   +P RS A EAAKD+DLSFTYKDP+GDDIVFDKDSEL LA+RLCPSSLEI+AA KE+  A KPDPE RLY +AARNLREYNGVPSMTP KLIKTLAFL+LNP+RLVKQ LAPK LL RM A   N  +    PLG  K NNEDL++SVAAGMELMSVED KKEWNDGFVS E   PA AAP TAE    DN    ++++D+ AP  K+N++HKAFIA GIQLRPRE   LLL + +
Sbjct:    7 NNCDNNDKMMTTSSIKINFQGASRDVNVPAPVTLDSLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISAALKESKPANKPDPEARLYKIAARNLREYNGVPSMTPPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK-NNEDLADSVAAGMELMSVED-KKEWNDGFVSAESDAPAAAAPITAETSSPDNDK--EEENDDAAPEVKKNLIHKAFIAGGIQLRPRE--GLLLGVSI 283          
BLAST of mRNA_C-linearis_contig101.721.1 vs. uniprot
Match: A0A6H5K3J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J2_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 8.630e-11
Identity = 61/171 (35.67%), Postives = 77/171 (45.03%), Query Frame = 1
Query:  307 KETAAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAPKENVLHKAFIAAGIQLRPREVRPLL 819
            K +  +  +P   LY  AARNL EY+GVPSMT   L KT+  LQL P RLV Q LAPK LL   +AA     +A                E      +   V DD    +     +E              D+ A     D  T   ++ +H  F+AAG+QLRPRE RPLL
Sbjct:   38 KPSCKRAVEPNPLLYKAAARNLCEYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKQLLEGKSAA----GDAXXXXXXXXXXXXXXXXEVDPEQADNNQVSDDSNTNSRDGTDIE-------------HDHVATQDSIDIETGASKHPIHAVFVAAGVQLRPRETRPLL 191          
BLAST of mRNA_C-linearis_contig101.721.1 vs. uniprot
Match: A0A6H5JCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG1_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 7.730e-8
Identity = 57/171 (33.33%), Postives = 79/171 (46.20%), Query Frame = 1
Query:  307 KETAAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAPKENVLHKAFIAAGIQLRPREVRPLL 819
            K +  +  +P   ++  AARNLREY+GVPS+TP  L  T+  L+L P RLV Q LAPK LL   + A  + D       GG ++  E  +   +  +   S  D     ND  V+                  A A+K          + +   F+A G+QLRPRE RPLL
Sbjct:   28 KPSCKRTGEPNPLMFKAAARNLREYHGVPSITPGGLETTMVLLELRPARLVAQGLAPKILLKGNSTAGVDADSTDGS--GGFEAEEEQANNQFSHDLSSNS-SDGGDTGNDNIVTQNSI-----------GFEARASK----------HPIQAVFVAVGVQLRPRETRPLL 174          
BLAST of mRNA_C-linearis_contig101.721.1 vs. uniprot
Match: A0A6H5KI70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI70_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 3.760e-6
Identity = 31/47 (65.96%), Postives = 34/47 (72.34%), Query Frame = 1
Query:  346 LYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKAL 486
            LY  AARNLREY+GVPSMT   L KT+  LQL P RLV Q LAPK +
Sbjct:   53 LYKAAARNLREYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKXI 99          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JQ17_9PHAE1.550e-11557.84PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN66_ECTSI8.260e-11567.09PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN68_ECTSI1.570e-11469.31PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KAY7_9PHAE8.430e-11266.99PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KB69_9PHAE2.010e-10866.03PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPU3_9PHAE3.320e-10760.16PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN82_ECTSI9.190e-9665.37PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K3J2_9PHAE8.630e-1135.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCG1_9PHAE7.730e-833.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI70_9PHAE3.760e-665.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:120729..124188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2636
Cds size1425
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.721.1prot_C-linearis_contig101.721.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig101 120759..123007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927361.2653534-UTR-C-linearis_contig101:120728..1207581622927361.2653534-UTR-C-linearis_contig101:120728..120758Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 120729..120758 +
1690879652.7013798-UTR-C-linearis_contig101:120728..1207581690879652.7013798-UTR-C-linearis_contig101:120728..120758Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 120729..120758 +
1622927361.3039737-UTR-C-linearis_contig101:123007..1241881622927361.3039737-UTR-C-linearis_contig101:123007..124188Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 123008..124188 +
1690879652.7383664-UTR-C-linearis_contig101:123007..1241881690879652.7383664-UTR-C-linearis_contig101:123007..124188Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 123008..124188 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927361.281793-CDS-C-linearis_contig101:120758..1210431622927361.281793-CDS-C-linearis_contig101:120758..121043Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 120759..121043 +
1690879652.7155483-CDS-C-linearis_contig101:120758..1210431690879652.7155483-CDS-C-linearis_contig101:120758..121043Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 120759..121043 +
1622927361.2929077-CDS-C-linearis_contig101:121867..1230071622927361.2929077-CDS-C-linearis_contig101:121867..123007Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 121868..123007 +
1690879652.726826-CDS-C-linearis_contig101:121867..1230071690879652.726826-CDS-C-linearis_contig101:121867..123007Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 121868..123007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig101.721.1

>prot_C-linearis_contig101.721.1 ID=prot_C-linearis_contig101.721.1|Name=mRNA_C-linearis_contig101.721.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=475bp
MNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAA
KDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETAAKKP
DPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPK
ALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKE
WNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAPKENVLHKAFIAA
GIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNG
GNASGDGPGPRQRMARGCGARGVGGPGGKPCGRRMMMLRGNLHPVAHPPS
PPPSFMVEGEDGMFFVPVERGGGGRRGPPHGPPHGPLHGPPPHKRHGRHA
GGPEEGEDGAGFHRGPPHGPPSHKRHGRHVRGPEEGEEGAGFHRGPRHGM
MGVRHARGGRQHQHQQEHGYYYWG*
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mRNA from alignment at C-linearis_contig101:120729..124188+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.721.1 ID=mRNA_C-linearis_contig101.721.1|Name=mRNA_C-linearis_contig101.721.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3460bp|location=Sequence derived from alignment at C-linearis_contig101:120729..124188+ (Chordaria linearis ClinC8C monoicous)
AACAACAACAACAACAACGACAACAACAAGATGAACACTCGCAAAATCAA GATCAACTTCCAGGGCACCGCTGGCGACGTCGACCTTCCGTCCCCGTTCA CGCTCGCCGGCCTCCAGCAAGCCATCGCTTCAACCTTCGGCACCGGGATG CCCGCTCGCTCCGGCGCTGATGAGGCCGCCAAGGACAGCGACCTGTCCTT CACCTACAAGGACCCTGAGGGCGACGACATCGTGTTCGACAAGGACTCCG AGCTGAGCCTGGCGCTTCGCCTGTGCCCCAGCTCGCTCGAGATCACCGCG GCCGCCAAGGAAACGGTGAGAGACGCTACAAGTACTCGAAACTCATGGAG TACACTGGTACTAGATTTGCGGTAGCTTGTGAGTTGGTTGCAGCGTGAGC GCGTGAGCTCGGTACGTTTGTAGAGAGAGTTGGATCAAAGTAGGCCATGA TCGCTGTAAGCCCGTCTTCACTCTGTCTTTTGAGGCCTGTACTTGGTGCG CCCGACTCCTGTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTCACATTAAA AACCATCCCGGTCCCGTCTCTATCCAGTACCTCCTTCTGTCTCAACCTCT CCGTAATCCATCACTTGACGCGGCCTATTTCCGTGGTCACAAGCTAACTT ACCTCTGTGTACGTACTTTTTTATTTTAATTTGTGTAACACCCGCAACGC GATTCCGGCGCTGCTCGTTGGGAACTCGTCTTCGGATGACCCCTCACGCA CAGACGAAATAAGAAATAAATCGGTAGACGAGAGTCGGTCTCGTGTCATA TACCTGGTATCATATTTCTTCAAATCGATTGGAGTCTGTGTAGTCACCAA GCTATCATCGCGTTGATTCAGTGGCGATTTTCCTCTTCTCGAAGCTTTGG GAACTGCTGTGCTTGTTCGCTGTGCTTGTTCATCCTCTCTCCCCGTCACC GACGAAAGGAGTCGGTACAAGAGTTCGACATCACCAGTACCGTATGTCTG TATCTATCGGCGAAGTTGTGTTACCCCACACCGCTGTAGAGTCTAAACAA TCAGTACTTGTACGTGTATTTGACGTTCCTCGTCCTCCCTCCCCCTCCCG CTCATTCTTTTCCCCTCTCCCTCTCTTCAACCCTTGCAGGCGGCCAAGAA GCCCGACCCCGAACACCGGCTGTACACCGTCGCCGCCCGCAACCTCCGCG AGTACAACGGCGTGCCCTCCATGACCCCGAAGAAGCTCATCAAGACCTTG GCGTTCCTCCAGCTCAACCCGCGCCGCCTCGTCAAGCAGAGCCTGGCCCC CAAGGCGCTGCTGATCCGCATGGCCGCCGCCAAGAAGAACGAGGACGAGG CGCAGCCCCAGCCCCTCGGCGGTGACAAGAGCAACAACGAAGATCTCTCC GAGTCGGTCGCCGCTGGCATGGAGCTGATGAGCGTCGAGGACGACAAGAA GGAGTGGAACGACGGTTTCGTATCCGTCGAACCCGCACCCGCCGCCCCTA CTACAGCGGAAGTGGTCGACTCCGACAACGCCGCTGCCGCGAAGGACAAG GACGACAATACCGCGCCCAAGGAGAACGTACTCCACAAGGCCTTCATCGC CGCCGGCATCCAGCTCCGCCCCCGCGAGGTCCGGCCCCTGCTTCTCGCCC TGGACGTCCGCCCCCGCCGCCTGGTGAAGCTCGGCTACGTGGACGGCAAG TACCTTCGCGCCATGCTCGAGGCGGAGAAGAAGGCCGCCCCGAAGCGCAA CGGCGGTAACGCCAGCGGCGACGGCCCCGGCCCCCGCCAGCGCATGGCTC GGGGCTGCGGTGCTCGCGGCGTCGGTGGGCCGGGCGGCAAGCCGTGCGGC CGGAGGATGATGATGCTGCGTGGCAACCTCCACCCGGTTGCCCACCCGCC CTCGCCCCCCCCGTCTTTCATGGTTGAGGGGGAGGACGGCATGTTCTTCG TGCCGGTCGAGCGCGGCGGTGGTGGTCGCCGCGGCCCTCCGCACGGCCCT CCGCACGGCCCTCTCCATGGCCCTCCCCCGCACAAGCGCCACGGGCGCCA CGCTGGCGGACCCGAGGAAGGCGAGGACGGGGCTGGTTTCCACCGCGGCC CTCCTCACGGCCCTCCCTCGCACAAGCGCCACGGGCGCCACGTTCGTGGG CCCGAGGAAGGCGAGGAAGGTGCTGGCTTCCACCGCGGCCCTCGCCACGG AATGATGGGGGTTCGCCATGCTCGCGGCGGTCGCCAGCACCAGCACCAGC AGGAGCACGGGTACTACTACTGGGGGTGAGCGTCGTCTTTCGCCAGCCTG GAGCCGAAGGAGGAGCCTAGCGTTGTCTTACCACTGAACACTGAAACGAC GGTCGTTTTGGGGTATACATAGTTTGGCGTCTCTCGGGGTATTATTTGCA ATTGGGCAGAAGCCTCCCTCGGAAAAATCGATACGAGGGGTGGAGAACGG CAGGTTTGACGATACGAGAACCGTTTCACCCGTCCAGGCCTCTGCGCTCA TGCAGCACGACGATATAGCACTAGGTCATTGCAGCTCTCGGCTCGTCATC GACTCCCTTGTTGGTGATGGATCGGTTGTTTGATTTGACAAGTTGCTTTC GTCTTTTTGTTTCGTCACGTACCCAAAGTACGTGTGTATGCGTAGGATAC TTTGACGTTTATGGGGTGATGCAACATCGCTCACCGCCGAGGGATAAGCG TAGGGCTGGTGCAGGAGTATATCAGCCTGTCCTGATGGATGGGCGTAGAG TAGGGCTGGGGGAAGGGGCATCTTGGCCTGTTTCCTCGTGGACGATACTT TCAGAGTCGCCAAGACAGTTGAGGGTGTAGGCGATGTTCAAGTGTTGAGG AGAAAAGTTGATATGCAGCTGCAGAGCCGGTCGATGCTGAATACCGGCAC CGCATGAATGGCGTACGCTGCAAAGCACGATTTGAGTATTGAAGGAGTAA ACTATCGGTTGATGCAGATGTACGAGAGACACACGTCGCGCAGCGGTGTG TCTGCGGTTAGGTTTTGGGTGTTGGAAAACATCGAGGGGAAGTAAGGAgG GGGGATATGTCTCAGGTGACGCAGCTACTCTGTATAGGCACCATGTGGCC AAGTGCTGTAGCAGCATATATGTCGTGCGTGGCCAACCACGAACACGAAG TGTAAGTGTTGGCCTATGCAGTGTTATTTTTTTGCAGTACGAGTAGCGAA GTGTGGTTTGCTGCCTGCTCCGGGTAAAGAGCTTTTGCCAGGAGGCCTAG TGGGGAGTAGAAACAGAAATACTAATACGTCTGGATCGTCCACGGCTTTA GTTAGAGACAGACGTATTGAGCTTTGTTTTGGTGACACCGGGCACAGGCA GTGGCACGGTGTGGTGTGTGGTGTTGAGGGGACGAGCATATGGATGGTGC CTTTGGATGAAAAAATAAACGGTGACCTTCGAGGTCCCAAAACAAAATCA ACAACTTGTC
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Coding sequence (CDS) from alignment at C-linearis_contig101:120729..124188+

>mRNA_C-linearis_contig101.721.1 ID=mRNA_C-linearis_contig101.721.1|Name=mRNA_C-linearis_contig101.721.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2850bp|location=Sequence derived from alignment at C-linearis_contig101:120729..124188+ (Chordaria linearis ClinC8C monoicous)
ATGAACACTCGCAAAATCAAGATCAACTTCCAGGGCACCGCTGGCGACGT
CGACCTTCCGTCCCCGTTCACGCTCGCCGGCCTCCAGCAAGCCATCGCTT
CAACCTTCGGCACCGGGATGCCCGCTCGCTCCGGCGCTGATGAGGCCGCC
AAGGACAGCGACCTGTCCTTCACCTACAAGGACCCTGAGGGCGACGACAT
CGTGTTCGACAAGGACTCCGAGCTGAGCCTGGCGCTTCGCCTGTGCCCCA
GCTCGCTCGAGATCACCGCGGCCGCCAAGGAAACGATGAACACTCGCAAA
ATCAAGATCAACTTCCAGGGCACCGCTGGCGACGTCGACCTTCCGTCCCC
GTTCACGCTCGCCGGCCTCCAGCAAGCCATCGCTTCAACCTTCGGCACCG
GGATGCCCGCTCGCTCCGGCGCTGATGAGGCCGCCAAGGACAGCGACCTG
TCCTTCACCTACAAGGACCCTGAGGGCGACGACATCGTGTTCGACAAGGA
CTCCGAGCTGAGCCTGGCGCTTCGCCTGTGCCCCAGCTCGCTCGAGATCA
CCGCGGCCGCCAAGGAAACGGCGGCCAAGAAGCCCGACCCCGAACACCGG
CTGTACACCGTCGCCGCCCGCAACCTCCGCGAGTACAACGGCGTGCCCTC
CATGACCCCGAAGAAGCTCATCAAGACCTTGGCGTTCCTCCAGCTCAACC
CGCGCCGCCTCGTCAAGCAGAGCCTGGCCCCCAAGGCGCTGCTGATCCGC
ATGGCCGCCGCCAAGAAGAACGAGGACGAGGCGCAGCCCCAGCCCCTCGG
CGGTGACAAGAGCAACAACGAAGATCTCTCCGAGTCGGTCGCCGCTGGCA
TGGAGCTGATGAGCGTCGAGGACGACAAGAAGGAGTGGAACGACGGTTTC
GTATCCGTCGAACCCGCACCCGCCGCCCCTACTACAGCGGAAGTGGTCGA
CTCCGACAACGCCGCTGCCGCGAAGGACAAGGACGACAATACCGCGCCCA
AGGAGAACGTACTCCACAAGGCCTTCATCGCCGCCGGCATCCAGCTCCGC
CCCCGCGAGGTCCGGCCCCTGCTTCTCGCCCTGGACGTCCGCCCCCGCCG
CCTGGTGAAGCTCGGCTACGTGGACGGCAAGTACCTTCGCGCCATGCTCG
AGGCGGAGAAGAAGGCCGCCCCGAAGCGCAACGGCGGTAACGCCAGCGGC
GACGGCCCCGGCCCCCGCCAGCGCATGGCTCGGGGCTGCGGTGCTCGCGG
CGTCGGTGGGCCGGGCGGCAAGCCGTGCGGCCGGAGGATGATGATGCTGC
GTGGCAACCTCCACCCGGTTGCCCACCCGCCCTCGCCCCCCCCGTCTTTC
ATGGTTGAGGGGGAGGACGGCATGTTCTTCGTGCCGGTCGAGCGCGGCGG
TGGTGGTCGCCGCGGCCCTCCGCACGGCCCTCCGCACGGCCCTCTCCATG
GCCCTCCCCCGCACAAGCGCCACGGGCGCCACGCTGGCGGACCCGAGGAA
GGCGAGGACGGGGCTGGTTTCCACCGCGGCCCTCCTCACGGCCCTCCCTC
GCACAAGCGCCACGGGCGCCACGTTCGTGGGCCCGAGGAAGGCGAGGAAG
GTGCTGGCTTCCACCGCGGCCCTCGCCACGGAATGATGGGGGTTCGCCAT
GCTCGCGGCGGTCGCCAGCACCAGCACCAGCAGGAGCACGGGTACTACTA
CTGGGGGTGAGCGGCCAAGAAGCCCGACCCCGAACACCGGCTGTACACCG
TCGCCGCCCGCAACCTCCGCGAGTACAACGGCGTGCCCTCCATGACCCCG
AAGAAGCTCATCAAGACCTTGGCGTTCCTCCAGCTCAACCCGCGCCGCCT
CGTCAAGCAGAGCCTGGCCCCCAAGGCGCTGCTGATCCGCATGGCCGCCG
CCAAGAAGAACGAGGACGAGGCGCAGCCCCAGCCCCTCGGCGGTGACAAG
AGCAACAACGAAGATCTCTCCGAGTCGGTCGCCGCTGGCATGGAGCTGAT
GAGCGTCGAGGACGACAAGAAGGAGTGGAACGACGGTTTCGTATCCGTCG
AACCCGCACCCGCCGCCCCTACTACAGCGGAAGTGGTCGACTCCGACAAC
GCCGCTGCCGCGAAGGACAAGGACGACAATACCGCGCCCAAGGAGAACGT
ACTCCACAAGGCCTTCATCGCCGCCGGCATCCAGCTCCGCCCCCGCGAGG
TCCGGCCCCTGCTTCTCGCCCTGGACGTCCGCCCCCGCCGCCTGGTGAAG
CTCGGCTACGTGGACGGCAAGTACCTTCGCGCCATGCTCGAGGCGGAGAA
GAAGGCCGCCCCGAAGCGCAACGGCGGTAACGCCAGCGGCGACGGCCCCG
GCCCCCGCCAGCGCATGGCTCGGGGCTGCGGTGCTCGCGGCGTCGGTGGG
CCGGGCGGCAAGCCGTGCGGCCGGAGGATGATGATGCTGCGTGGCAACCT
CCACCCGGTTGCCCACCCGCCCTCGCCCCCCCCGTCTTTCATGGTTGAGG
GGGAGGACGGCATGTTCTTCGTGCCGGTCGAGCGCGGCGGTGGTGGTCGC
CGCGGCCCTCCGCACGGCCCTCCGCACGGCCCTCTCCATGGCCCTCCCCC
GCACAAGCGCCACGGGCGCCACGCTGGCGGACCCGAGGAAGGCGAGGACG
GGGCTGGTTTCCACCGCGGCCCTCCTCACGGCCCTCCCTCGCACAAGCGC
CACGGGCGCCACGTTCGTGGGCCCGAGGAAGGCGAGGAAGGTGCTGGCTT
CCACCGCGGCCCTCGCCACGGAATGATGGGGGTTCGCCATGCTCGCGGCG
GTCGCCAGCACCAGCACCAGCAGGAGCACGGGTACTACTACTGGGGGTGA
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