mRNA_C-linearis_contig101.708.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig101.708.1
Unique NamemRNA_C-linearis_contig101.708.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.640e-36
Identity = 127/352 (36.08%), Postives = 168/352 (47.73%), Query Frame = 3
Query:  222 RGGTPLMCASGRGHVTTVKILLATGADLTLRTSPMCRISLHSALDLAAVNGRGDVVVALLEHGADINAASPNGKTALHLVTQYKQGVGLLLDAGASVHNKT---VHGCTPLHFAAGRTNVRAMRALLRXXXXXXXXXXXXXXXXXXXCAAQRPRVEAAVGLLLRWGGSETAVGSGRLTPAGLLEQL----------------------AYRRRCSLDEAELARGLLVRAPVDRAWRRRCWVVMLRARAERERMAQCMGSSXXXXXXXEVGQDDHGGSESESIAGESCAKSRHVEVARTDDGVGTQ-------ERAQRERVRRG-------LVAALVGLELEGVFRTIVGYLY 1160
            RG +PLM AS  GH +TV+ LL  GAD+ LR +    + + +A+D+A   G   V+ A++E+G ++ A    G TALH   +  Q V +LLDAGA V+ K    +HG TPL       +  A+ ALL+                   C +    ++  V LLLRWG SETAV    LTP+ +L+                        A R      E + AR LL RAP DR WRRRCW+VMLRARAER R A   GS          G D    +   ++     A   + +V +TD G   +       ER +  R  RG       LV ALVGLE E VFRTIV +L+
Sbjct:  205 RGVSPLMVASEGGHCSTVEALLRAGADMNLRHAGGAHLGM-TAMDVAVSKGHVGVIEAIVENGGNVRATDTYGLTALHHA-RGAQAVDVLLDAGADVNAKACPALHGFTPLSVCVMDNSCEAVVALLKRGGNVNDTNCGGLSALHLTCGSLSRGMDRMVDLLLRWGASETAVNKNGLTPSDILKVTTAEYHARDAGGDGSATRCVGGSATRHDSLTKEIQRARVLLARAPADRTWRRRCWLVMLRARAERGRGAPSSGS----------GSDRTEAATGRNLPRHEEADGDNSKVGKTDAGAVGEGSGPTDGERGRDGRATRGAAAGEGGLVPALVGLESEEVFRTIVCFLH 544          
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Match: D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 2.340e-29
Identity = 115/315 (36.51%), Postives = 147/315 (46.67%), Query Frame = 3
Query:  258 GHVTTVKILLATGADLTLRTSPMCRISLHSALDLAAVNGRGDVVVALLEHGADINAASPNGKTALHLVTQYKQG--VGLLLDAGASVHNKT--VHGCTPLHFAAGRTNVRAMRALLRXXXXXXXXXXXXXXXXXXXCAAQRPRVEAAVGLLLRWGGSETAVGSGRLTPAGLLEQLAYRRRCSLD-------EAELARGLLVRAPVDRAWRRRCWVVMLRARAERERMA----QCMGSSXXXXXXXEVGQDDHGGSESESIAGESCAKSRHVEVARTDDGVGTQERAQRERVRRGLVAALVGLELEGVFRTIVGYL 1157
            GHV TVK+LLA GAD  +R      +  HSAL  AA   R DV+ ALLEHG D+N    +    LH   Q+     + +LLDAGA +  K   + G T LHFAA   N  A+ ALLR                      +    +  V +LLR G SE AV      P  L +++  R + +         E E A  LL RAP DR WRRRCW++MLR R  +ER      +  G          +G    GGS +   +G S  +           G G   RA  E   RGLV+ LV LE +GVFRTI+GY+
Sbjct:  202 GHVATVKVLLAAGADTDIRD-----LDSHSALVFAAQYERIDVMKALLEHGVDVNVGEDHWNP-LHWAAQFNSTGCITVLLDAGADIDVKCSFLDGRTSLHFAAETGNNEALLALLRRGANVHQTTDDGSTALHLVSEMEGHAPDDTVDILLRRGASEQAVDRNGKAPVDLFKRVQRRFQSARPMGDSEWPELERAIELLARAPADRTWRRRCWLIMLRERTNKERTIHGGRRRKGKKVGNGEGLLLGDGKRGGSNNVRRSGRSRGR-----------GGG---RAAVEVDLRGLVSVLVCLESDGVFRTILGYI 496          
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Match: D7FYF2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF2_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.340e-22
Identity = 123/359 (34.26%), Postives = 151/359 (42.06%), Query Frame = 3
Query:  222 RGGTPLMCASGRGHVTTVKILLATGA-DLTLRTSPMCRISLHSALDLAAVNGRGDVVVALLEHGADINAASPN-GKTALHLVTQYKQGVGL---LLDAGASVHNKTVHGCTPLHFAAGR-------TNVRAMRALLRXXXXXXXXXXXXXXXXXXXCAAQRPR-VEAAVGLLLRWGGSETAVGSGRLTPAGLLEQLAYRR-------RCSL---DEAELARGLLVRAPVDRAWRRRCWVVMLRARAERERMA-----QCMGSSXXXXXXXEVGQDDHGGSESESIAGESCAK-----SRHVEVARTDDGVGTQERAQR--------------ERVRRGLVAALVGLELEGVFRTIVGYL 1157
            RG  PL  A     V   + LLA GA   T   S   R      L LAA  G  D++  LL+HG D+N+     G TALH    +  G G    L+DAGA ++ +   G +PLH+AA         +    + ALL                        RPR + + V LLLRWGG E  VG    T + LLE   +         +C L   DE E AR LL RA  DRAWRRRC  VMLRAR +R   A     +            E GQ +  GSES  + G   A      S     A   D  G +  +QR              ER  R +V  LV L  E VFRTIVG+L
Sbjct:   99 RGARPLHHAIAEDRVAATETLLAAGALSATADDSSSFR-----PLVLAACKGSIDIINILLKHGVDVNSRDDVVGATALHAAANWSSGSGAVHALIDAGAEINVQRKDGGSPLHYAAASRASPPSSSPFETILALLERGASVNQVHSGTAQTPLLLACQHRPRGLGSVVDLLLRWGGDEKVVGGDGRTASELLELDQHHHATENEHHQCHLEQDDEIERARSLLSRAKEDRAWRRRCLPVMLRARQQRVCTAPNGDIEARRRGGRDHADLEAGQTE--GSESIGVGGAPGAANEIEDSNGTATADLVDNSGVEGESQRLACVSGSDNRLDETERWTR-VVDKLVRLTAEDVFRTIVGFL 449          
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 3.560e-22
Identity = 79/197 (40.10%), Postives = 103/197 (52.28%), Query Frame = 3
Query:  342 HSALDLAAVNGRGDVVVALLEHGADIN--AASPNGKTALH--LVTQYKQGVGLLLDAGASVHNKTVHGC----TPLHFAAGRTNVRAMRALLRXXXXXXXXXXXXXXXXXXXCAAQRPRVEAAVGLLLRWGGSETAVGSGRLTPAGLLEQLAYRRRCSLDEAELARGLLVRAPVDRAWRRRCWVVMLRARAERERMA 908
            ++ +++A   G   V+ A LEHG D +  A   +G TALH   +    + V +LL+AGA    +++ G     TPL  AA   +  A+R LLR                      Q P V   V LLLRWG SETAV     TPA + ++LA  R  + +E   A  LL RAP DRAWRRR WVVMLRAR+E ER+A
Sbjct:  168 NAEINVATQLGHVGVIKAFLEHGVDASSQACPASGWTALHQAALDNQAEAVEVLLEAGADADVESLPGSPCYDTPLLAAAESMSNEALRVLLRNGADPNKPDDNGSMPLHLAAHEQTPGVMEVVDLLLRWGASETAVNKHGNTPAEVFQRLAIHRPDATEERAGALVLLARAPADRAWRRRGWVVMLRARSETERIA 364          
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 3.400e-21
Identity = 86/227 (37.89%), Postives = 104/227 (45.81%), Query Frame = 3
Query:  231 TPLMCASGRGHVTTVKILLATGADLTLRTSPMCRISLHSALDLAAVNGRGDVVVALLEHGADINAASPNGKTALHLVTQYKQG--VGLLLDAGASVHNKTVHGCTPLHFAAG-RTNVRAMRALLRXXXXXXXXXXXXXXXXXXXCAAQRPRVEAAVGLLLRWGGSETAVGSGRLTPAGLLEQLAYRRRCSLDEAELARGLLVRAPVDRAWRRRCWVVMLRARAERER 902
            +PL  AS RGH++TVK LL  GAD+++RT        +S                       +NA S +G TALH      Q   + +LLDAGA +  K     TPL  A     +V+A+  LLR                   C    P  +A V LLLRWG SE  +  G  TPA LL            E E A  LL  AP DRAWRRR W+VMLRAR ERER
Sbjct:  206 SPLTVASQRGHLSTVKTLLNAGADVSMRTGHR-----NSXXXXXXXXXXXXXXXXXXXXXXXVNA-SKHGYTALHAGCAMNQAGAMDVLLDAGADMDRKCYGASTPLCVAIEFGASVQAVHTLLRRGCQVSGPMDKTMLHLA--CMTMAPGFDAIVDLLLRWGVSELTLDKGGNTPAALLSVAEGSSSRKAREVERAHVLLANAPADRAWRRRSWLVMLRARTERER 424          
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 4.960e-20
Identity = 96/315 (30.48%), Postives = 128/315 (40.63%), Query Frame = 3
Query:  231 TPLMCASGRGHVTTVKILLATGADLTLRTSPMCRISLHSALDLAAVNGRGDVVVALLEHGADINAASPNGKTALHLVTQYKQGVG----LLLDAGASVHNKTVHGCTPLHFAAGRTNVRAMRALLRXXXXXXXXXXXXXXXXXXX-CAAQRPRVEAAVGLLLRWGGSETAVGSGRLTPAGLLEQLAYRR-RCSLDEAELARGLLVRAPVDRAWRRRCWVVMLRARAERERMAQCMGSSXXXXXXXEVGQDDHGGSESESIAGESCAKSRHVEVARTDDGVGTQERAQRERVRRGLVAALVGLELEGVFRTIVGYL 1157
            TPLM A  RGH+  V+ LL  GAD +LR     ++  +S                       ++A    G TALH    +    G    +L+ A A    K+V G TPLH AA    V  + ALL+                    C  QR  + A++ LLLRWG  ETA      TP  +L         CS DE + AR LLVRAP DR WRRR W+V+LR+R          G+S       +  ++                K   ++VA    GV               V  L  LE E VFR+++G+L
Sbjct:  209 TPLMLAVRRGHLAIVETLLEAGADCSLR-----QLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTAILFSDRAGPAVHMLVKARADTELKSVGGWTPLHAAAEHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTDNPHCSPDEVDRARLLLVRAPTDRRWRRRGWLVVLRSRTIVVAHRCAKGASDSGLSLCQARRN---------------GKGARIDVAGNSSGV---------------VELLTELEPEAVFRSVLGFL 488          
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 5.390e-20
Identity = 109/348 (31.32%), Postives = 135/348 (38.79%), Query Frame = 3
Query:  225 GGTPLMCASGRGHVTTVKILLATGADLTLR-TSPMCR----------------------------ISLHSALDLAAVNGRGDVVVALLEHGADINAA----SPNGKTALHLVTQYKQGVGLLLDAGASVHNKTVHGCTPLHFAAGRTNVRAMRALLRXXXXXXXXXXXXXXXXXXXCAAQRPRVEAAVGLLLRWGGSETAVGSGRLTPAGLLEQLAYRRRCSLDEAELARGLLVRAPVDRAWRRRCWVVMLRARAERERMAQCMGSSXXXXXXXEVGQDDHGGSESESIAGESCAKSRHVEVARTDDGVGTQER----AQRERVRRGLVAALVGLELEGVFRTIVGYL 1157
            G TPLM A+ +GHV TVK+LLA GAD+ +R     C                             I   S L  AA + R D V  LL+ GA+IN        +            + +  LL  GA V  KT  G T LH A                                   A+  +V+  V  LLRWG SE AV     TP   L ++A        E + A  LL RAP DRAWRRR W+VML  R ++ER  +  G                         GE       V +   + G G   R    A  +   RG+V  LVGLE EGVFRTIVGY+
Sbjct:  206 GYTPLMVAAEQGHVATVKVLLAAGADVDVREVDYSCSAXXXXXXXXXXXXXXXXXXXXXXANEGVIDDQSPLHWAAGHNRPDCVAVLLDAGANINGRCNFLDNHXXXXXXXXXXXXEALLALLSRGARVDEKTDDGSTALHLAGH---------------------------------ARGYKVDDTVDTLLRWGASEQAVDENDETPVDRLTEVAREVVWEWPELDRALELLARAPADRAWRRRGWLVMLHERTKKERHVR--GDRPRK--------------------GEKVGSGEEVLLGDGERGRGKNARRRGGAAVKADLRGVVNVLVGLESEGVFRTIVGYV 498          
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Match: A0A6H5K8N6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N6_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.610e-19
Identity = 118/360 (32.78%), Postives = 152/360 (42.22%), Query Frame = 3
Query:  222 RGGTPLMCASGRGHVTTVKILLATGADLTLRTSPMCRISLHSALDLAAVNGRGDVVVALLEHGADINAASPN-GKTALHLVTQYKQG---VGLLLDAGASVHNKTVHGCTPLHFAAGR-------TNVRAMRALLRXXXXXXXXXXXXXXXXXXXCAAQRPR-VEAAVGLLLRWGGSETAVGSGRLTPAGLLEQLAYRR-------RCSL---DEAELARGLLVRAPVDRAWRRRCWVVMLRARAERERMAQCMGSSXXXXXXXEVGQDDHG--------GSESESIAGESCA-----KSRHVEVARTDDGVGTQERAQ-------------RERVRRGLVAALVGLELEGVFRTIVGYL 1157
            RG  PL  A     V   + LL  GA   L  +P    S    L LAA  G  D++  LL+HG D+N+     G TALH       G   V  L+DAGA ++ +   G +PLH+AA         +    + ALL+                       RPR + + V LLLRWGG +T VG    T + LLE   +         +C L   DE   AR LL RA  DRAWRRRC  VMLRA  +R     C   S         G+D HG        GS+   I G   A     +S     A   D  G +  +Q             ++R  R +V  LV L +E VFRTIVG++
Sbjct:   99 RGARPLHHAIAEDRVAATEALLVAGA---LGATPEDSSSFRP-LVLAACKGSIDIINVLLKHGVDVNSRDDVVGATALHAAANCASGASAVHALVDAGAEINVQRKDGGSPLHYAAASRASSSPSSPFETILALLQRGASVNQVHSGTAQTPLLLACQHRPRGLGSVVDLLLRWGGDDTVVGGDGRTASELLELDQHHHATETEHHQCHLEQDDEIGRARTLLSRAKEDRAWRRRCLPVMLRAHQQRV----CTAPSGDIEARRRGGRD-HGDLEAGQMEGSKRIDIGGAPGAANEIEESNGTATADLVDNSGVEGESQSLACVGGSDRLDEKDRWTR-VVDKLVRLTVEDVFRTIVGFI 448          
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Match: D7G1Y4_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y4_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 3.770e-17
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 3
Query: 1986 SGKGTICAEVVKRSNAVHVSCGDLLREEVQCWTPLGLQVAEKMKEGKLVDASTVLA 2153
            SGKGTICAEVVKR+NAVHVS GDLLR+EVQ  TPLGLQVAE+MKEG+LVDASTVLA
Sbjct:  259 SGKGTICAEVVKRANAVHVSSGDLLRDEVQRQTPLGLQVAERMKEGRLVDASTVLA 314          
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 8.350e-17
Identity = 85/242 (35.12%), Postives = 115/242 (47.52%), Query Frame = 3
Query:  225 GGTPLMCASGRGHVTTVKILLATGADLTLRTSPMCRISLHSALDLAAVNGRGDVVVALLEHGADINAASPNGKTALHLVTQYKQ--GVGLLLDAGASVHNKTVHGCTPLHFAAGRTNVRAMRALLRXXXXXXXXXXXXXXXXXXXCA-AQRPRVEAAVGLLLRWGGSETAVGSGRLTPAGLLEQLAYRRRCSLD--EAELARGLLVRAPVDRAWRRRCWVVMLRA---RAERERMAQCMGSS 926
            G TPL  A   GH++TVK LLA   D ++R     R   +S LDLAA  G   V+ A+L+HG D+N  + +G T+LH+     +   + +L++AGA V  +    CTP   A       A  AL +                      A R  V A V +LLR G  ETA+     T A ++        C L+  + E  R LL  APVDRAWRRR ++V+ RA   +A R R A    SS
Sbjct:   71 GRTPLHLAVENGHLSTVKALLAADPDTSVRYRIWNRS--YSVLDLAAQKGDACVLRAILQHGVDVNRRT-DGYTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACINHCHEAALALYKHGSNIEARDIRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVLCRAFWIKARRLRAASSNASS 309          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1F4_9PHAE1.640e-3636.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXA8_ECTSI2.340e-2936.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FYF2_ECTSI1.340e-2234.26Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FSI6_ECTSI3.560e-2240.10Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D8LBP9_ECTSI3.400e-2137.89Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D7FLL7_ECTSI4.960e-2030.48Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5K513_9PHAE5.390e-2031.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8N6_9PHAE2.610e-1932.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1Y4_ECTSI3.770e-1787.50N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y4_ECT... [more]
D7G6X8_ECTSI8.350e-1735.12Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:26811..30051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.6
Seed ortholog evalue1.5e-30
Seed eggNOG ortholog2880.D7FXA8
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size2737
Cds size1098
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.708.1prot_C-linearis_contig101.708.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig101 27050..28147 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927359.6690066-UTR-C-linearis_contig101:26810..270491622927359.6690066-UTR-C-linearis_contig101:26810..27049Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 26811..27049 +
1690879651.4515238-UTR-C-linearis_contig101:26810..270491690879651.4515238-UTR-C-linearis_contig101:26810..27049Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 26811..27049 +
1622927359.6895645-UTR-C-linearis_contig101:28147..289601622927359.6895645-UTR-C-linearis_contig101:28147..28960Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 28148..28960 +
1690879651.4797192-UTR-C-linearis_contig101:28147..289601690879651.4797192-UTR-C-linearis_contig101:28147..28960Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 28148..28960 +
1622927359.7013662-UTR-C-linearis_contig101:29464..300511622927359.7013662-UTR-C-linearis_contig101:29464..30051Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 29465..30051 +
1690879651.4946795-UTR-C-linearis_contig101:29464..300511690879651.4946795-UTR-C-linearis_contig101:29464..30051Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 29465..30051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927359.6799579-CDS-C-linearis_contig101:27049..281471622927359.6799579-CDS-C-linearis_contig101:27049..28147Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 27050..28147 +
1690879651.468493-CDS-C-linearis_contig101:27049..281471690879651.468493-CDS-C-linearis_contig101:27049..28147Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 27050..28147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig101.708.1

>prot_C-linearis_contig101.708.1 ID=prot_C-linearis_contig101.708.1|Name=mRNA_C-linearis_contig101.708.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=366bp
MCASGRGHVTTVKILLATGADLTLRTSPMCRISLHSALDLAAVNGRGDVV
VALLEHGADINAASPNGKTALHLVTQYKQGVGLLLDAGASVHNKTVHGCT
PLHFAAGRTNVRAMRALLRRGASVNETNTRGSTALHLACAAQRPRVEAAV
GLLLRWGGSETAVGSGRLTPAGLLEQLAYRRRCSLDEAELARGLLVRAPV
DRAWRRRCWVVMLRARAERERMAQCMGSSSSGGGGGEVGQDDHGGSESES
IAGESCAKSRHVEVARTDDGVGTQERAQRERVRRGLVAALVGLELEGVFR
TIVGYLYKRGRCYGRCCRLGASLSTNPFRLFHVRFVPLVCWLVCVIVYGF
TVPTPRVSLGSFREK*
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mRNA from alignment at C-linearis_contig101:26811..30051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.708.1 ID=mRNA_C-linearis_contig101.708.1|Name=mRNA_C-linearis_contig101.708.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3241bp|location=Sequence derived from alignment at C-linearis_contig101:26811..30051+ (Chordaria linearis ClinC8C monoicous)
GTCAACTACAGGGACCCCACGGACAAGTGCTGCCCTCTGCACGTCGCGGC CGCTGGAGGACACAAGGATCTGGTCCGCGACCTCCTGATCGGCGGGATGA GCCCCTCGTCTCCCGGCTTCCGCGGCATCACTCCTCTCCACATTGCCGCT GATCTGGGCCACGAGGAGATCGTGACCACGCTGTTGGGCACCCCGAGCAC CGACAAGGACGCTCAGCCAGGCGGGGGGGTACGCCGCTCATGTGTGCTTC TGGGAGGGGCCACGTCACTACCGTGAAGATCTTGCTGGCCACCGGCGCAG ACCTGACCCTACGAACCAGTCCCATGTGCAGAATTTCCCTCCACTCGGCG TTGGACCTTGCCGCGGTCAACGGACGCGGCGACGTCGTCGTGGCACTCCT CGAGCACGGGGCCGACATCAACGCCGCCAGCCCCAACGGCAAAACCGCCC TTCACCTTGTCACCCAGTACAAGCAAGGCGTGGGCCTGCTCCTCGACGCG GGAGCGAGCGTGCACAACAAAACCGTCCACGGCTGCACGCCTCTGCACTT CGCCGCAGGCAGGACTAACGTGAGGGCGATGCGCGCCCTGCTGCGGCGGG GGGCCAGCGTCAACGAGACCAACACCCGGGGGTCTACCGCCCTGCACCTG GCGTGCGCTGCCCAGAGACCCCGTGTAGAGGCAGCGGTGGGCCTTCTGCT GAGGTGGGGGGGGTCGGAAACGGCCGTCGGCAGCGGCCGCCTGACACCCG CCGGCTTGCTCGAGCAACTCGCCTATCGCCGCCGTTGCTCGCTGGACGAA GCGGAGCTGGCTCGAGGGCTGTTGGTGCGTGCTCCCGTGGACAGGGCGTG GCGCCGCCGGTGCTGGGTGGTCATGCTCCGCGCGAGGGCGGAGAGGGAGA GAATGGCGCAATGCATGGGGAGTAGCAGCAGCGGCGGCGGCGGCGGGGAG GTGGGACAGGACGACCACGGTGGTAGCGAGTCCGAGTCTATCGCAGGCGA AAGCTGCGCCAAGTCCAGACACGTCGAAGTCGCGCGGACGGACGATGGCG TTGGCACCCAGGAAAGAGCCCAGCGTGAAAGGGTCCGGCGTGGCTTGGTG GCAGCGCTGGTGGGGCTGGAGTTGGAGGGAGTATTCCGGACCATCGTGGG CTATCTTTATAAGCGGGGGCGGTGTTACGGTAGGTGCTGTCGACTTGGGG CGAGCTTAAGTACCAACCCGTTTCGTCTTTTCCATGTCAGGTTTGTCCCC CTTGTTTGCTGGTTGGTGTGCGTCATAGTCTATGGATTTACAGTGCCAAC ACCCCGCGTCTCCCTCGGGTCGTTCCGAGAAAAGTGATAAGGAATCACTG CTGTAAATTTGGAACAAGCGCATCCAGCAGCGCGGGTGCACGTGAACGTA CGTTCATGTGGGATACGCTCCTGTTCATAGCGCGATTAGATTATCAAATC GATCGACTGGTATGGTTGTTGGAGCTGGAGCGACGCGCGGTAGCGGCTGC TAATGCAGTTGAGTGCGTCGGACGGGTCTGTTCGTCCGTGCTCTGGCTGA TAGATACGTAGGCGTGACCAGTTGTTAGGTTGTCCTCATACGGGTGGAGC GCGTTGTAGGCGGACAGGTCGAACAACACGATTGTTTGTGTCTCTGTCCG AACCCACCACCCTCGGAGCAGATTGGGCGGTTTAGGCGAATCCTTTGTTT TATTTCACGGGGCACGCAGTGGTATGGCGATTACCGCGGCATGTGTGTTT GCGGTTAAGTTGGACACCCAAGGTGAAGGGACGGGTGGCCCCCGTCAATT GACACCAGAGGGGTGTTTTGCACAATACATAGCATCGGAGTATTTTTTTT CACTGCTGTTTTTTCACGAAATCGCGCCTTGCCTTTTGCCCTGATCATGT TGAACAGCTGTTTCGTCAAGGCGTAATCAACGAACGTTTTTATCCTGAGA CAACTGTAGTCGCCCTCATCTTAATCTGCTTGGTCTCGGGGAAGGGGACC ATCTGCGCCGAGGTGGTGAAGCGGTCTAACGCCGTGCACGTCAGCTGCGG CGACCTCCTGAGGGAGGAAGTCCAGTGCTGGACGCCTCTGGGGCTGCAGG TGGCGGAGAAGATGAAGGAGGGCAAACTCGTCGATGCTAGCACCGTGCTG GTGAGAGAGCGAAACATTTTTGTGGTGTTTTTGAGTGAGGCGTTGGAGAA GGAAATGTTTCGTGCGTGTGAGCGGATTGACTGTGCCTGATGGAGGACAA CGTCGGTATCCGCTTGTGCAAACTCTGCTGGAGGGAGGTGCAGATCCTGC TCTCGCCAATCACGAAAGAAAAATTGCTCTACACTTTGCCGCGAGGGTTG GTGACACAGAGGTGATGGGAACACTCTTGCGGAGAGCACCTTCGACGCTC AACATCGCCGACAGAGGCTGTACTGCGCTGTGGCATGCTGCCATATCGGG GCAATAAACGGCGGTGTCCTACCTGCTGTCTGAAGGAGCCACAGAGAACG CGGTGCTCGCACAGACGGGTAGGTCTGCCCTGCTGGGTGCAATACATCAA GGCAGGGAGAACGTGGTTCACCTACTGCTCAATGAGGGGATGGAAGCGGT TGGGGGCATGCTATCCTCACCATTGTCCCATTTGCGCCCTCGTGGATGAT CCAGGCTTGAAATTTGGCCGGCAGAGTTTCGATGCTGTCCGGAAACGACT GGGCGTGGTTCCCCCCAATGCTGCCCGCGACTCCGCATAATATTTGGCGT CAGTTGGTGCACGACAGCTCGAGCAGCGCAGCGACAAGAGGGGCCGTCTT CTCTCTCCCCCCCCCCGCTGTTGGCCTCGGCTTCCTGGTGACACGTTTGG CGGAGGCAGCAGGATACGGTACCGCCACACGGACGGCAAATGGTGCTGCG ATAGTGAGTGTGTGTGAGGTGGCGTGGTGGAGAGCGAGCGTAGTCGGAGG GAACGGACGACAGAGAGAGTTGGGTCGAATGAGGAGGCAAGCAAGAGGGG GGGGTTGGCCAGCCGCCGGCCACTACTGCACGTATGTTTGTCGATTTAAT GTCTTTTCAGGGGCCGGCGAGTGGAGAACAACAACGCGTTGCAGCACTGG TGCCCCAACAGCAGTGTGTATGAGCTCGTGGTTGATAGTCTCATCCAGAG ACTACAGCTAAGGCTATCGTGGAAGAAGCAGTGATGGTAGTTACACCGGC AGCTGCATGCTTCGGTCGGGCGTGAAGTTGTTGGGCGGGGC
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Coding sequence (CDS) from alignment at C-linearis_contig101:26811..30051+

>mRNA_C-linearis_contig101.708.1 ID=mRNA_C-linearis_contig101.708.1|Name=mRNA_C-linearis_contig101.708.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2196bp|location=Sequence derived from alignment at C-linearis_contig101:26811..30051+ (Chordaria linearis ClinC8C monoicous)
ATGTGTGCTTCTGGGAGGGGCCACGTCACTACCGTGAAGATCTTGCTGGC
CACCGGCGCAGACCTGACCCTACGAACCAGTCCCATGTGCAGAATTTCCC
TCCACTCGGCGTTGGACCTTGCCGCGGTCAACGGACGCGGCGACGTCGTC
GTGGCACTCCTCGAGCACGGGGCCGACATCAACGCCGCCAGCCCCAACGG
CAAAACCGCCCTTCACCTTGTCACCCAGTACAAGCAAGGCGTGGGCCTGC
TCCTCGACGCGGGAGCGAGCGTGCACAACAAAACCGTCCACGGCTGCACG
CCTCTGCACTTCGCCGCAGGCAGGACTAACGTGAGGGCGATGCGCGCCCT
GCTGCGGCGGGGGGCCAGCGTCAACGAGACCAACACCCGGGGGTCTACCG
CCCTGCACCTGGCGTGCGCTGCCCAGAGACCCCGTGTAGAGGCAGCGGTG
GGCCTTCTGCTGAGGTGGGGGGGGTCGGAAACGGCCGTCGGCAGCGGCCG
CCTGACACCCGCCGGCTTGCTCGAGCAACTCGCCTATCGCCGCCGTTGCT
CGCTGGACGAAGCGGAGCTGGCTCGAGGGCTGTTGGTGCGTGCTCCCGTG
GACAGGGCGTGGCGCCGCCGGTGCTGGGTGGTCATGCTCCGCGCGAGGGC
GGAGAGGGAGAGAATGGCGCAATGCATGGGGAGTAGCAGCAGCGGCGGCG
GCGGCGGGGAGGTGGGACAGGACGACCACGGTGGTAGCGAGTCCGAGTCT
ATCGCAGGCGAAAGCTGCGCCAAGTCCAGACACGTCGAAGTCGCGCGGAC
GGACGATGGCGTTGGCACCCAGGAAAGAGCCCAGCGTGAAAGGGTCCGGC
GTGGCTTGGTGGCAGCGCTGGTGGGGCTGGAGTTGGAGGGAGTATTCCGG
ACCATCGTGGGCTATCTTTATAAGCGGGGGCGGTGTTACGGTAGGTGCTG
TCGACTTGGGGCGAGCTTAAGTACCAACCCGTTTCGTCTTTTCCATGTCA
GGTTTGTCCCCCTTGTTTGCTGGTTGGTGTGCGTCATAGTCTATGGATTT
ACAGTGCCAACACCCCGCGTCTCCCTCGGGTCGTTCCGAGAAAAGTGAAT
GTGTGCTTCTGGGAGGGGCCACGTCACTACCGTGAAGATCTTGCTGGCCA
CCGGCGCAGACCTGACCCTACGAACCAGTCCCATGTGCAGAATTTCCCTC
CACTCGGCGTTGGACCTTGCCGCGGTCAACGGACGCGGCGACGTCGTCGT
GGCACTCCTCGAGCACGGGGCCGACATCAACGCCGCCAGCCCCAACGGCA
AAACCGCCCTTCACCTTGTCACCCAGTACAAGCAAGGCGTGGGCCTGCTC
CTCGACGCGGGAGCGAGCGTGCACAACAAAACCGTCCACGGCTGCACGCC
TCTGCACTTCGCCGCAGGCAGGACTAACGTGAGGGCGATGCGCGCCCTGC
TGCGGCGGGGGGCCAGCGTCAACGAGACCAACACCCGGGGGTCTACCGCC
CTGCACCTGGCGTGCGCTGCCCAGAGACCCCGTGTAGAGGCAGCGGTGGG
CCTTCTGCTGAGGTGGGGGGGGTCGGAAACGGCCGTCGGCAGCGGCCGCC
TGACACCCGCCGGCTTGCTCGAGCAACTCGCCTATCGCCGCCGTTGCTCG
CTGGACGAAGCGGAGCTGGCTCGAGGGCTGTTGGTGCGTGCTCCCGTGGA
CAGGGCGTGGCGCCGCCGGTGCTGGGTGGTCATGCTCCGCGCGAGGGCGG
AGAGGGAGAGAATGGCGCAATGCATGGGGAGTAGCAGCAGCGGCGGCGGC
GGCGGGGAGGTGGGACAGGACGACCACGGTGGTAGCGAGTCCGAGTCTAT
CGCAGGCGAAAGCTGCGCCAAGTCCAGACACGTCGAAGTCGCGCGGACGG
ACGATGGCGTTGGCACCCAGGAAAGAGCCCAGCGTGAAAGGGTCCGGCGT
GGCTTGGTGGCAGCGCTGGTGGGGCTGGAGTTGGAGGGAGTATTCCGGAC
CATCGTGGGCTATCTTTATAAGCGGGGGCGGTGTTACGGTAGGTGCTGTC
GACTTGGGGCGAGCTTAAGTACCAACCCGTTTCGTCTTTTCCATGTCAGG
TTTGTCCCCCTTGTTTGCTGGTTGGTGTGCGTCATAGTCTATGGATTTAC
AGTGCCAACACCCCGCGTCTCCCTCGGGTCGTTCCGAGAAAAGTGA
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