mRNA_C-linearis_contig101.719.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig101.719.1
Unique NamemRNA_C-linearis_contig101.719.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:109515..111050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1536
Cds size804
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.719.1prot_C-linearis_contig101.719.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig101 109560..110363 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927359.1391933-UTR-C-linearis_contig101:109514..1095591622927359.1391933-UTR-C-linearis_contig101:109514..109559Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 109515..109559 +
1690879651.2650938-UTR-C-linearis_contig101:109514..1095591690879651.2650938-UTR-C-linearis_contig101:109514..109559Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 109515..109559 +
1622927359.1635225-UTR-C-linearis_contig101:110363..1110501622927359.1635225-UTR-C-linearis_contig101:110363..111050Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 110364..111050 +
1690879651.2822866-UTR-C-linearis_contig101:110363..1110501690879651.2822866-UTR-C-linearis_contig101:110363..111050Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 110364..111050 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927359.1517348-CDS-C-linearis_contig101:109559..1103631622927359.1517348-CDS-C-linearis_contig101:109559..110363Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 109560..110363 +
1690879651.2741418-CDS-C-linearis_contig101:109559..1103631690879651.2741418-CDS-C-linearis_contig101:109559..110363Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 109560..110363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig101.719.1

>prot_C-linearis_contig101.719.1 ID=prot_C-linearis_contig101.719.1|Name=mRNA_C-linearis_contig101.719.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=268bp
MDPREGQLLGGAGAGAEGGAEAECREDMPARRRRPGGESDEGLELRVGEE
RVAAARLLESLGGGAYWEGGPRTHSSLENGTEGLESGERLPENSERRGDG
GAPEPVAAAAAERGARKGAVDPPPPTPSPDPGFSDRGRLRDELVVGSVAC
KTAAAAGSGRDEEAKTAAGQGEGEDEDEGESEGGDNTIGTPAASAEMDGG
VVGGAGGAGGTSSGGGSGCDRPGSGSVPSPAASADDTDGAPGEAGVAAPP
EKAGASTSPPQPPPPAY*
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mRNA from alignment at C-linearis_contig101:109515..111050+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.719.1 ID=mRNA_C-linearis_contig101.719.1|Name=mRNA_C-linearis_contig101.719.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1536bp|location=Sequence derived from alignment at C-linearis_contig101:109515..111050+ (Chordaria linearis ClinC8C monoicous)
AGAAGCTCGGCCTCGGGGGACGAGGGGCGATTGACCTTCGATTCGATGGA
CCCAAGAGAGGGGCAACTCCTCGGAGGGGCAGGGGCAGGGGCAGAGGGCG
GGGCTGAAGCCGAGTGTCGAGAGGATATGCCGGCACGCCGCCGCCGACCC
GGGGGAGAGAGCGACGAGGGGCTTGAGCTTCGAGTCGGAGAAGAAAGGGT
CGCCGCCGCACGGCTTCTAGAAAGCCTCGGCGGGGGGGCTTACTGGGAAG
GCGGGCCCCGTACCCATAGCAGCCTTGAAAACGGGACCGAGGGTCTCGAA
AGCGGGGAGAGACTACCGGAAAACTCCGAGAGACGCGGTGACGGAGGCGC
TCCCGAGCCCGTGGCGGCGGCGGCCGCGGAGCGAGGGGCGAGGAAGGGCG
CCGTAGACCCGCCGCCACCGACACCATCGCCAGATCCCGGCTTCTCGGAC
CGAGGGCGGCTGCGGGACGAGTTGGTGGTGGGTAGCGTGGCGTGCAAGAC
TGCTGCCGCGGCAGGGAGCGGCCGCGACGAGGAGGCTAAGACTGCTGCAG
GCCAAGGCGAAGGCGAAGACGAAGACGAAGGCGAAAGCGAAGGGGGCGAC
AACACGATTGGAACACCCGCAGCCTCAGCTGAAATGGACGGCGGCGTTGT
CGGCGGCGCTGGCGGTGCCGGTGGCACGAGTAGTGGGGGCGGTAGCGGCT
GTGATCGGCCAGGGTCGGGCTCTGTTCCCAGTCCCGCTGCGAGCGCTGAT
GACACAGACGGAGCGCCCGGTGAGGCGGGTGTGGCTGCTCCCCCAGAAAA
GGCCGGGGCAAGTACTTCGCCGCCGCAGCCACCACCCCCGGCGTATTAAG
GTGTATCATACGTATGCCGGCGGTCTGTCTGGTCGACGTCACCGGCGTTT
TATTGTTTGTATTTTTGTATGTATGTACATGTTTTTGCGCACGGGTTGGT
TCGTTCAGCGGACCGGCTTGACGGGGCCGTCGAAGAATAAAAGAACGTGC
TTCTTTAGTTGTAGTTTTCCTCTTTACTGTCGCACCGCCTGCTGCTGTGA
CTGCGTTTTTTATTTTTATAAATTATGTGTTTGAGCTGCCGCCGACTTTC
TGACACCGAACGTTGACACGAGTCCGCGGCCGTTGTGCTCGTAGCGTTAC
CTTTGTCATGTCCTGCTTGACACTCACGATTGCTGTGGCCTCATGATGCG
TTCCAAACCGCCGCGCCGGGTCGCGATCAAGTGACCAGGAAAAATCGGCA
ACGCTGGGCTCGATTGGTATTCGCTTGAGTCTCTGAAAAACTGTCGAGCT
TGTTTGTGGAAGCAAGGTCGGAGGGAGCCTTGGGAAGAGGAGGTTTCTGT
GTGATCCCGGGCTCTCTCAGGTACTGGGTAGAGTAAAAAGTAAGAAGAAC
GAATGCTACACACGAGGGGATGGGATGTGGCACAGTTAGTTCACACAGAT
CCCACAGCGACCTCTCTCTTGAATAGTCTAGTCCATCACCCACGCAAAAC
ATGACGCGAGAGATCGTCTGCAGTAAAGAAAAAGAG
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Coding sequence (CDS) from alignment at C-linearis_contig101:109515..111050+

>mRNA_C-linearis_contig101.719.1 ID=mRNA_C-linearis_contig101.719.1|Name=mRNA_C-linearis_contig101.719.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1608bp|location=Sequence derived from alignment at C-linearis_contig101:109515..111050+ (Chordaria linearis ClinC8C monoicous)
ATGGACCCAAGAGAGGGGCAACTCCTCGGAGGGGCAGGGGCAGGGGCAGA
GGGCGGGGCTGAAGCCGAGTGTCGAGAGGATATGCCGGCACGCCGCCGCC
GACCCGGGGGAGAGAGCGACGAGGGGCTTGAGCTTCGAGTCGGAGAAGAA
AGGGTCGCCGCCGCACGGCTTCTAGAAAGCCTCGGCGGGGGGGCTTACTG
GGAAGGCGGGCCCCGTACCCATAGCAGCCTTGAAAACGGGACCGAGGGTC
TCGAAAGCGGGGAGAGACTACCGGAAAACTCCGAGAGACGCGGTGACGGA
GGCGCTCCCGAGCCCGTGGCGGCGGCGGCCGCGGAGCGAGGGGCGAGGAA
GGGCGCCGTAGACCCGCCGCCACCGACACCATCGCCAGATCCCGGCTTCT
CGGACCGAGGGCGGCTGCGGGACGAGTTGGTGGTGGGTAGCGTGGCGTGC
AAGACTGCTGCCGCGGCAGGGAGCGGCCGCGACGAGGAGGCTAAGACTGC
TGCAGGCCAAGGCGAAGGCGAAGACGAAGACGAAGGCGAAAGCGAAGGGG
GCGACAACACGATTGGAACACCCGCAGCCTCAGCTGAAATGGACGGCGGC
GTTGTCGGCGGCGCTGGCGGTGCCGGTGGCACGAGTAGTGGGGGCGGTAG
CGGCTGTGATCGGCCAGGGTCGGGCTCTGTTCCCAGTCCCGCTGCGAGCG
CTGATGACACAGACGGAGCGCCCGGTGAGGCGGGTGTGGCTGCTCCCCCA
GAAAAGGCCGGGGCAAGTACTTCGCCGCCGCAGCCACCACCCCCGGCGTA
TTAAATGGACCCAAGAGAGGGGCAACTCCTCGGAGGGGCAGGGGCAGGGG
CAGAGGGCGGGGCTGAAGCCGAGTGTCGAGAGGATATGCCGGCACGCCGC
CGCCGACCCGGGGGAGAGAGCGACGAGGGGCTTGAGCTTCGAGTCGGAGA
AGAAAGGGTCGCCGCCGCACGGCTTCTAGAAAGCCTCGGCGGGGGGGCTT
ACTGGGAAGGCGGGCCCCGTACCCATAGCAGCCTTGAAAACGGGACCGAG
GGTCTCGAAAGCGGGGAGAGACTACCGGAAAACTCCGAGAGACGCGGTGA
CGGAGGCGCTCCCGAGCCCGTGGCGGCGGCGGCCGCGGAGCGAGGGGCGA
GGAAGGGCGCCGTAGACCCGCCGCCACCGACACCATCGCCAGATCCCGGC
TTCTCGGACCGAGGGCGGCTGCGGGACGAGTTGGTGGTGGGTAGCGTGGC
GTGCAAGACTGCTGCCGCGGCAGGGAGCGGCCGCGACGAGGAGGCTAAGA
CTGCTGCAGGCCAAGGCGAAGGCGAAGACGAAGACGAAGGCGAAAGCGAA
GGGGGCGACAACACGATTGGAACACCCGCAGCCTCAGCTGAAATGGACGG
CGGCGTTGTCGGCGGCGCTGGCGGTGCCGGTGGCACGAGTAGTGGGGGCG
GTAGCGGCTGTGATCGGCCAGGGTCGGGCTCTGTTCCCAGTCCCGCTGCG
AGCGCTGATGACACAGACGGAGCGCCCGGTGAGGCGGGTGTGGCTGCTCC
CCCAGAAAAGGCCGGGGCAAGTACTTCGCCGCCGCAGCCACCACCCCCGG
CGTATTAA
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