mRNA_C-linearis_contig101.711.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig101.711.1
Unique NamemRNA_C-linearis_contig101.711.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:41638..42154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size517
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927359.0913093-CDS-C-linearis_contig101:41637..420181622927359.0913093-CDS-C-linearis_contig101:41637..42018Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 41638..42018 +
1690879651.239024-CDS-C-linearis_contig101:41637..420181690879651.239024-CDS-C-linearis_contig101:41637..42018Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 41638..42018 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927359.1018183-UTR-C-linearis_contig101:42018..421541622927359.1018183-UTR-C-linearis_contig101:42018..42154Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 42019..42154 +
1690879651.2479234-UTR-C-linearis_contig101:42018..421541690879651.2479234-UTR-C-linearis_contig101:42018..42154Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 42019..42154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.711.1prot_C-linearis_contig101.711.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig101 41638..42018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig101.711.1

>prot_C-linearis_contig101.711.1 ID=prot_C-linearis_contig101.711.1|Name=mRNA_C-linearis_contig101.711.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=127bp
PSFSFQNRRPQVDTLVRRFDAGENTYLYGRHCSNNNDCPSFARCGRVDWA
DILGKPTPCSFLPSLGDTKGLILINSRWSRAFPPALNRPFFPRSTQKDKE
KGTLKKRRFETKRAADFKHISASTSS*
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mRNA from alignment at C-linearis_contig101:41638..42154+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.711.1 ID=mRNA_C-linearis_contig101.711.1|Name=mRNA_C-linearis_contig101.711.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=517bp|location=Sequence derived from alignment at C-linearis_contig101:41638..42154+ (Chordaria linearis ClinC8C monoicous)
CCCTCTTTTTCGTTTCAAAACAGACGCCCACAGGTCGACACTCTTGTTAG
GCGCTTCGACGCTGGCGAAAACACGTACTTGTACGGTAGGCATTGCTCCA
ACAATAACGATTGCCCGTCTTTTGCGAGGTGCGGGCGTGTAGACTGGGCG
GACATTCTCGGGAAACCAACCCCTTGCAGTTTCCTTCCCTCCCTGGGAGA
CACGAAAGGATTAATTTTGATTAATTCAAGATGGTCGCGGGCGTTCCCAC
CTGCTTTGAATAGACCGTTCTTTCCACGAAGCACGCAGAAAGATAAAGAG
AAGGGCACGCTTAAGAAACGCCGCTTCGAAACAAAGCGTGCCGCAGACTT
CAAACACATCTCCGCGAGTACATCTAGCTGAGCCACGAAGAGCAAGCCAA
CACAAAAGGCTGGGACAATAAATGGTACGTTCTAATAAAGCATTTACCCG
CGAGAGACGAATAAAACAACCGTCGCGGATCTCTCTTCGGCAACAAGGGC
AACCCCATCCCCCTCCC
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Coding sequence (CDS) from alignment at C-linearis_contig101:41638..42154+

>mRNA_C-linearis_contig101.711.1 ID=mRNA_C-linearis_contig101.711.1|Name=mRNA_C-linearis_contig101.711.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at C-linearis_contig101:41638..42154+ (Chordaria linearis ClinC8C monoicous)
CCCTCTTTTTCGTTTCAAAACAGACGCCCACAGGTCGACACTCTTGTTAG
GCGCTTCGACGCTGGCGAAAACACGTACTTGTACGGTAGGCATTGCTCCA
ACAATAACGATTGCCCGTCTTTTGCGAGGTGCGGGCGTGTAGACTGGGCG
GACATTCTCGGGAAACCAACCCCTTGCAGTTTCCTTCCCTCCCTGGGAGA
CACGAAAGGATTAATTTTGATTAATTCAAGATGGTCGCGGGCGTTCCCAC
CTGCTTTGAATAGACCGTTCTTTCCACGAAGCACGCAGAAAGATAAAGAG
AAGGGCACGCTTAAGAAACGCCGCTTCGAAACAAAGCGTGCCGCAGACTT
CAAACACATCTCCGCGAGTACATCTAGCTGACCCTCTTTTTCGTTTCAAA
ACAGACGCCCACAGGTCGACACTCTTGTTAGGCGCTTCGACGCTGGCGAA
AACACGTACTTGTACGGTAGGCATTGCTCCAACAATAACGATTGCCCGTC
TTTTGCGAGGTGCGGGCGTGTAGACTGGGCGGACATTCTCGGGAAACCAA
CCCCTTGCAGTTTCCTTCCCTCCCTGGGAGACACGAAAGGATTAATTTTG
ATTAATTCAAGATGGTCGCGGGCGTTCCCACCTGCTTTGAATAGACCGTT
CTTTCCACGAAGCACGCAGAAAGATAAAGAGAAGGGCACGCTTAAGAAAC
GCCGCTTCGAAACAAAGCGTGCCGCAGACTTCAAACACATCTCCGCGAGT
ACATCTAGCTGA
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