mRNA_C-linearis_contig101.752.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig101.752.1
Unique NamemRNA_C-linearis_contig101.752.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot
Match: A0A6H5KIV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIV8_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 3.090e-31
Identity = 69/108 (63.89%), Postives = 82/108 (75.93%), Query Frame = 1 
Query:  100 MRRVTSEGLLQHLADSGVPAAQELQREREEARQMQAASRAALKDANVFGRTKEGRQTFQTILISHAYDVDEGPSTVPDYRRAEILGVHPAVFNAARQRKGEIAAARPP 423
            M+ + +E LLQ L D+GVPAAQE+ +E  +ARQ QAASRAALKDA VFGRT  GRQT+QTIL +HAYD DEG ST+P YR+AEILGV PA F+ ARQR   +    PP
Sbjct:    1 MKAMNAETLLQSLIDNGVPAAQEIHQELADARQFQAASRAALKDAAVFGRTNMGRQTYQTILTAHAYDGDEGASTLPGYRKAEILGVDPAEFSRARQRAKSLQPRVPP 108
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BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot
Match: A0A6H5JI78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI78_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 2.320e-28
Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:  100 MRRVTSEGLLQHLADSGVPAAQELQREREEARQMQAASRAALKDANVFGRTKEGRQTFQTILISHAYDVDEGPSTVPDYRRAEILGVHPAVFN 378
            M+ + +E LLQ L D+GVPAAQE+ +E  +ARQ QAASRAALKDA VFGRT  GRQT+QTIL +HAYD DEG ST+P YR+AEILGV PA F+
Sbjct:    1 MKAMNAETLLQSLIDNGVPAAQEIHQELADARQFQAASRAALKDAAVFGRTNMGRQTYQTILTAHAYDGDEGASTLPGYRKAEILGVDPAEFS 93
[Close]
BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot
Match: A0A6H5JIV9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIV9_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 3.710e-27
Identity = 66/111 (59.46%), Postives = 79/111 (71.17%), Query Frame = 1 
Query:  100 MRRVTSEGLLQHLADSGVPAAQELQR---EREEARQMQAASRAALKDANVFGRTKEGRQTFQTILISHAYDVDEGPSTVPDYRRAEILGVHPAVFNAARQRKGEIAAARPP 423
            M+ +TSE LL  L+  G+PAAQELQ    + E+ARQ QAASR ALKDA VFGRT +GRQT+QTIL + AYD DEG   +P YR+AEILGV PA F+ ARQR   +    PP
Sbjct:    1 MKSMTSEALLACLSQEGIPAAQELQELQLQLEDARQFQAASREALKDAAVFGRTNQGRQTYQTILTACAYDGDEGTQALPSYRKAEILGVDPAEFSRARQRVKSLQPHLPP 111
[Close]
BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot
Match: A0A6H5KQH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH6_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 7.390e-21
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:  178 EREEARQMQAASRAALKDANVFGRTKEGRQTFQTILISHAYDVDEGPSTVPDYRRAEILGVHPAVFNAARQRKGEIAAARPP 423
            E E+ARQ QA SRAALKDA VFGRT +GRQT+QTIL + AYD DEG   +P YR+AEILGV PA F+ ARQR   +    PP
Sbjct:   28 ELEDARQFQATSRAALKDAAVFGRTNQGRQTYQTILTACAYDGDEGTQALPSYRKAEILGVDPAEFSRARQRVKSLQPHLPP 109
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KIV8_9PHAE3.090e-3163.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI78_9PHAE2.320e-2867.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIV9_9PHAE3.710e-2759.46Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KQH6_9PHAE7.390e-2163.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:490904..493204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size476
Cds size474
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927358.9807246-CDS-C-linearis_contig101:490903..4913201622927358.9807246-CDS-C-linearis_contig101:490903..491320Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 490904..491320 -
1690879651.194644-CDS-C-linearis_contig101:490903..4913201690879651.194644-CDS-C-linearis_contig101:490903..491320Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 490904..491320 -
1622927358.9946253-CDS-C-linearis_contig101:493147..4932041622927358.9946253-CDS-C-linearis_contig101:493147..493204Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 493148..493204 -
1690879651.203216-CDS-C-linearis_contig101:493147..4932041690879651.203216-CDS-C-linearis_contig101:493147..493204Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 493148..493204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.752.1prot_C-linearis_contig101.752.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig101 490904..493204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig101.752.1

>prot_C-linearis_contig101.752.1 ID=prot_C-linearis_contig101.752.1|Name=mRNA_C-linearis_contig101.752.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=158bp
QCLLLSGGNGSEDSCLREEACDPRDTSAPFLVAMRRVTSEGLLQHLADSG
VPAAQELQREREEARQMQAASRAALKDANVFGRTKEGRQTFQTILISHAY
DVDEGPSTVPDYRRAEILGVHPAVFNAARQRKGEIAAARPPPCRSVFCSR
RAPRSCP*
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mRNA from alignment at C-linearis_contig101:490904..493204-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.752.1 ID=mRNA_C-linearis_contig101.752.1|Name=mRNA_C-linearis_contig101.752.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2301bp|location=Sequence derived from alignment at C-linearis_contig101:490904..493204- (Chordaria linearis ClinC8C monoicous)
CAGTGTCTCCTGTTAAGCGGCGGCAACGGGAGTGAAGACTCTTGTCTTCG
CGAAGAGGTGGGTGCCACTTCCGTAAGTTTATGCGTTTGTTCTTCACGGG
ACAAGGACTTTTTTCTTGGACCAATTCCTTGTGCTAAGGTCCAAACCAAA
ACGTGCTTCGCGCTCGCCATGGCTAGAGAAGAAATTAACCCTTTCGTGAC
TAGACCCCACTCTAGCTCCGGTCATAGCTCCGATCGTATTCCGAGCCTTT
TTTACCAGTCAACGCTATATACATTGCCCCGCGCGTTTACGCTGGTGTGT
GTGTCGGTGGTTCTGCGTGTGCTGTTATCTACCAATGCATCAATCCCAGT
CAAAAGCCAGACACTATTATGGATATTGTTGTATACCCTGGCACGTAGAC
AGAGGCTATGTCTTCGACGTTAGTCGAGGTGGTGACACTGTGCGAGCGGG
AGCAGAGAAGCGAGGATGTGCTTCTGTGCTGTAGAGAAGAAAACGTGATA
TCACGTACACACGGCGCTTATGTGGCCAACACACACAGATATAATCCACA
GAGAATGCAGGAGTCCAGACGACGGCAGCTTCCAGAGATGATCAGGAAAG
CTAAGATAGCACGACGACCAGGAGAGATCCACGCGAGAGAGTGAGCTTTA
CGTCCTACGCAGAGAATGCTACGACGACAGTAATTCCTCCGCATAAATAC
GTTACGTCTGAACCGATACATAGAGAGATCTACGATGATCTACGATGAAC
ACAAGAGCAGTGCTACGAACATTGAACCTACATGGTCATGTGCTAACATT
TCCATAACAGTGGCAAAAGTGCGTGACAAAAGTGCGAGGCGGTTGAGATT
TAGTGCGGCAAATCTGCCGCTGCTGGTGCCGTTTCACCCCCCCTGATATC
CAACGAGTGTTGCAGGGCGAGCAAAAAAGAGCAAAAAAGAGAGCGAGACA
AAAAAACTCGGGTGTGGAGCGTACGCCGCACACAGGCAACCAGTTCACCA
TCTTACATATCATCGGGCTTCACAAGCCACATGTGTATGCAGGAATGCCT
GTTGTGCAGCGGCGCAGGGATCAGGAGGCGGTCGCGTGTGGGCCGAAAAA
GAAAAAATCACCCACACGCACGAAAAAAAAGAAAACAGCACCGCACTTTC
GCGTGGTCGCCTCTCTTGTGTACACTGCCTACAAACAGTGGCCCGTGAGC
TACAACGAACACACCCGACGCCCTCTACAGTGTGTCTCTACGAGCTTCGT
TGGGCTACAGCAGTGGGAATCGTTCCCTTCTCTCGGTTGGGTGGGATAAA
AACTCGCACAGCAGGCAGCATCGTCCGTCCGTTAGCTTTTTTTTCGGTTG
ATCGGCTGAAGTAATATTTTGCCCGCGACCATCCCCACACATCCCAAACC
AGCCAAACAGCTACACCTAAAATCTGAGGAGGGCTATGAGTGCTCTCTGA
CGGGTGCATGTCTCTGAAGATGGTGCCTTTCACACTCCTGACTCTGCGTT
GTGCACGCCCGGCACCCTTTAGAGGTGCCGGTTGGGAGACGACCTTATTT
TGTTTTGGCGCGCAAGCAATAATAAATTTGAAATCTGAAAAATTTGTGCG
TGACAAAAAGTTCGTCTCAGGCGCGGCGCAACCTCCCTCACGCATATATT
ATCAGCTCACGCACTTATTTTCAGCTCACGCACTTGTGTGAAGACAACAA
CAACAACAACAACAACAACAACTTATTACCAGGCGTGTGATAACCGTCTA
TTACTACACCGCGGTTGCATCCACATCTTGCAAAATAATTCCAGCCGCAT
GTTGTAGCGCTCCGAGTTTGTCGTTGACTCTCCTCCCCGCACGCTCTCTC
TTGCTGTGCTGCCGCCAAATTACGGCCGCCGCAGGCGTGTGACCCGCGAG
ACACCTCTGCGCCATTCTTGGTCGCGATGAGAAGAGTGACTTCAGAAGGC
CTGCTGCAGCATCTGGCCGACAGCGGAGTGCCGGCAGCGCAGGAGCTGCA
GCGGGAACGAGAGGAAGCGCGGCAGATGCAGGCGGCATCGCGGGCAGCTC
TGAAAGATGCAAATGTGTTTGGCCGAACCAAGGAGGGGAGGCAAACCTTT
CAGACGATCCTCATATCTCATGCCTACGACGTCGACGAGGGGCCGTCAAC
GGTGCCGGATTACCGCAGGGCGGAGATCCTAGGCGTTCATCCGGCTGTCT
TCAACGCCGCACGTCAAAGAAAGGGCGAAATCGCTGCAGCCCGCCCTCCA
CCCTGCCGCAGCGTGTTTTGTTCGCGTCGAGCACCCCGCTCTTGTCCCTA
A
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Coding sequence (CDS) from alignment at C-linearis_contig101:490904..493204-

>mRNA_C-linearis_contig101.752.1 ID=mRNA_C-linearis_contig101.752.1|Name=mRNA_C-linearis_contig101.752.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at C-linearis_contig101:490904..493204- (Chordaria linearis ClinC8C monoicous)
CAGTGTCTCCTGTTAAGCGGCGGCAACGGGAGTGAAGACTCTTGTCTTCG
CGAAGAGCAGTGTCTCCTGTTAAGCGGCGGCAACGGGAGTGAAGACTCTT
GTCTTCGCGAAGAGGCGTGTGACCCGCGAGACACCTCTGCGCCATTCTTG
GTCGCGATGAGAAGAGTGACTTCAGAAGGCCTGCTGCAGCATCTGGCCGA
CAGCGGAGTGCCGGCAGCGCAGGAGCTGCAGCGGGAACGAGAGGAAGCGC
GGCAGATGCAGGCGGCATCGCGGGCAGCTCTGAAAGATGCAAATGTGTTT
GGCCGAACCAAGGAGGGGAGGCAAACCTTTCAGACGATCCTCATATCTCA
TGCCTACGACGTCGACGAGGGGCCGTCAACGGTGCCGGATTACCGCAGGG
CGGAGATCCTAGGCGTTCATCCGGCTGTCTTCAACGCCGCACGTCAAAGA
AAGGGCGAAATCGCTGCAGCCCGCCCTCCACCCTGCCGCAGCGTGTTTTG
TTCGCGTCGAGCACCCCGCTCTTGTCCCTAAGCGTGTGACCCGCGAGACA
CCTCTGCGCCATTCTTGGTCGCGATGAGAAGAGTGACTTCAGAAGGCCTG
CTGCAGCATCTGGCCGACAGCGGAGTGCCGGCAGCGCAGGAGCTGCAGCG
GGAACGAGAGGAAGCGCGGCAGATGCAGGCGGCATCGCGGGCAGCTCTGA
AAGATGCAAATGTGTTTGGCCGAACCAAGGAGGGGAGGCAAACCTTTCAG
ACGATCCTCATATCTCATGCCTACGACGTCGACGAGGGGCCGTCAACGGT
GCCGGATTACCGCAGGGCGGAGATCCTAGGCGTTCATCCGGCTGTCTTCA
ACGCCGCACGTCAAAGAAAGGGCGAAATCGCTGCAGCCCGCCCTCCACCC
TGCCGCAGCGTGTTTTGTTCGCGTCGAGCACCCCGCTCTTGTCCCTAA
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