mRNA_C-linearis_contig101.746.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig101.746.1
Unique NamemRNA_C-linearis_contig101.746.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:395424..395964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size173
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927358.9340346-CDS-C-linearis_contig101:395424..3955181622927358.9340346-CDS-C-linearis_contig101:395424..395518Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 395425..395518 -
1690879651.1766648-CDS-C-linearis_contig101:395424..3955181690879651.1766648-CDS-C-linearis_contig101:395424..395518Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 395425..395518 -
1622927358.9482157-CDS-C-linearis_contig101:395887..3959641622927358.9482157-CDS-C-linearis_contig101:395887..395964Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 395888..395964 -
1690879651.1863298-CDS-C-linearis_contig101:395887..3959641690879651.1863298-CDS-C-linearis_contig101:395887..395964Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 395888..395964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.746.1prot_C-linearis_contig101.746.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig101 395425..395964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig101.746.1

>prot_C-linearis_contig101.746.1 ID=prot_C-linearis_contig101.746.1|Name=mRNA_C-linearis_contig101.746.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=57bp
RPSSWTWRWAPSRSGSLGTVPRATSRVYEQAFGQRKDKGKEDSTKKKQKT
TETGDWG
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mRNA from alignment at C-linearis_contig101:395424..395964-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.746.1 ID=mRNA_C-linearis_contig101.746.1|Name=mRNA_C-linearis_contig101.746.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=541bp|location=Sequence derived from alignment at C-linearis_contig101:395424..395964- (Chordaria linearis ClinC8C monoicous)
CGGCCGAGTTCCTGGACGTGGCGGTGGGCTCCATCAAGAAGTGGGAGCTT
GGGTACCGTACCAAGGGCCACATCGCGGTGAGAGCAATGATTTCTAAGTC
GCGTGAGCATACGACTCTTAGGTGGGTCTTTGTACAGCAGTGGGCAACGT
ACACATGCATTTGATGGTGAGGTGTGTGATGTACAAAACCCGACACAACT
TGAAAAACACAGCAGTTTTGATTTTAATCCTGCCTCTCTCCTCGCGCGCT
TTCTCTGATATGTGTGTCACTTCCCCACGTTCTTGGCAAGCACTCTGTTG
TGTTTTCGTTTTACAGTAGGGTGGCGATAATTTTTCAAAGAAAAAGAACA
CCCCGGGGCGAAAACACCCCGGGGCGTGGTCTAATTTTTCACACATTTTC
ACTCACACACAAGTTTGGCAAAACACGCGATGTCGGGCCTCGGTAGTGTC
TACGAGCAAGCTTTCGGGCAGAGGAAGGATAAGGGCAAGGAGGATTCTAC
CAAGAAGAAGCAGAAGACGACCGAGACGGGCGATTGGGGAT
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Coding sequence (CDS) from alignment at C-linearis_contig101:395424..395964-

>mRNA_C-linearis_contig101.746.1 ID=mRNA_C-linearis_contig101.746.1|Name=mRNA_C-linearis_contig101.746.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at C-linearis_contig101:395424..395964- (Chordaria linearis ClinC8C monoicous)
CGGCCGAGTTCCTGGACGTGGCGGTGGGCTCCATCAAGAAGTGGGAGCTT
GGGTACCGTACCAAGGGCCACATCGCGCGGCCGAGTTCCTGGACGTGGCG
GTGGGCTCCATCAAGAAGTGGGAGCTTGGGTACCGTACCAAGGGCCACAT
CGCGTGTCTACGAGCAAGCTTTCGGGCAGAGGAAGGATAAGGGCAAGGAG
GATTCTACCAAGAAGAAGCAGAAGACGACCGAGACGGGCGATTGGGGATG
TCTACGAGCAAGCTTTCGGGCAGAGGAAGGATAAGGGCAAGGAGGATTCT
ACCAAGAAGAAGCAGAAGACGACCGAGACGGGCGATTGGGGA
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