mRNA_C-linearis_contig101.740.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig101.740.1 vs. uniprot
Match: D7FJI6_ECTSI (MORN repeat variant family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJI6_ECTSI) HSP 1 Score: 733 bits (1892), Expect = 2.610e-235 Identity = 788/953 (82.69%), Postives = 818/953 (85.83%), Query Frame = 1 Query: 1171 GGVGPFAFPPEAPMFVLPLAGLSAARCFPKYQNAMRSGALVPYDSLDRNSAFVVFVSHRWINDSGRSTGFRQHGAAGNGGDGTPDVDSAKHYFLVEGLSSILASLPREVAVFLWIDFSCIDQDDEESKRKGARSLAAYMQLSDAVFTPYAESLYPSSGGGGEARKESDWWGTFANPLGEVCNTPWPNSYRSLQDFCCRAWCRLEVLLCATLPLRDGGFRYFAARGEEGRAQDRPHFIYGDYQRRRKLPPEALARSVDEAWASSLDPLEGFLSNQDDMEAIVHGMGPVRLASRSAASSAIGSSLNTYTAAAASS---QPRGSEERRRAGGRATGENADTLGRSVGGRGQTMPRGTGRG-----------RAGRGFIPPPIETRSVPSTSDEAELVSAARGNAPDRLMSPAVKGSRIMASP--MRMRTAAADSAMGGETTGVRGDSSMPGWLWDTVFQYPLAQGDTRTQYSDGSTFVGPLKDGMRHGKGGYFFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQGKKKSGVFTYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDNVKHGEGTAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSYKGGLYHGEAGCYWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMALDSTDEGFRSIHYRADGIECTIKGDELRSLMRRINEQRMMQPVTPTVNTESEERDQQLTAVAIAPSIASTTESVSDV 3981
GGVGPFAFPPEAPMFVLPL GLSAAR FPKYQNAMRSGALVPYDSLDRNSAFVVFVSHRWIN+S R T F +HG + G+G+PDVDSAKH FLVEGL SILASLPREVAVFLWID+SCIDQ++ ESKRKGARS+AAYMQLSDAVFTPYAESLYPSSGGGG TFANPLGEVCNTPWPNSYRSLQDFC RAWCRLEVLLCATLPLRDGGFRYFAARGEEGRAQDRPHF+YG+YQRRR LPPEALARSVDEAWASS+DPLEGFLSN +DMEAIVHGMGPVRLASRSAASSA+GSS+NT TA A + P SEERRRA GRA+GE R GR IPP ETR++P SDEAELVSAAR A DRLMSPAVKG RI++SP MR RTAAADSA+G ET G RGDSSMPGWLWDTVFQYPL++GDTRTQYSDGSTFVGPLKDGMRHGKG YFFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VQGKKKSGVFTY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDN KHGEGTA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ALDST +G RS+HYRADG ECTI+GDELR+LMRRINEQRMMQPVTP VN E+E+ DQQLTA AIAPSIAST ESVSDV
Sbjct: 106 GGVGPFAFPPEAPMFVLPLTGLSAARSFPKYQNAMRSGALVPYDSLDRNSAFVVFVSHRWINESSRPTEFWKHGGGQDFGEGSPDVDSAKHTFLVEGLHSILASLPREVAVFLWIDYSCIDQENPESKRKGARSVAAYMQLSDAVFTPYAESLYPSSGGGGGE--------TFANPLGEVCNTPWPNSYRSLQDFCSRAWCRLEVLLCATLPLRDGGFRYFAARGEEGRAQDRPHFVYGEYQRRRNLPPEALARSVDEAWASSVDPLEGFLSNPEDMEAIVHGMGPVRLASRSAASSALGSSVNTTTAVATVATPLHPGDSEERRRATGRASGERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTGRELIPPLSETRAMPGLSDEAELVSAARSIATDRLMSPAVKGGRIISSPSPMRKRTAAADSAVGSETRGARGDSSMPGWLWDTVFQYPLSEGDTRTQYSDGSTFVGPLKDGMRHGKGCYFFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWVQGKKKSGVFTYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDNSKHGEGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDDMKWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYEFKEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-KALDSTAQGSRSVHYRADGTECTIQGDELRNLMRRINEQRMMQPVTPIVNPEAEQPDQQLTAAAIAPSIASTAESVSDV 1049
BLAST of mRNA_C-linearis_contig101.740.1 vs. uniprot
Match: A0A7S3UUH9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUH9_HETAK) HSP 1 Score: 98.2 bits (243), Expect = 6.130e-17 Identity = 87/272 (31.99%), Postives = 122/272 (44.85%), Query Frame = 1 Query: 1252 FPKYQNAMRSGALVPYDSLD------RNSAFVVFVSHRWINDSGRSTGFRQHGAAGNGGDGTPDVDSAKHYFLVEGLSSILASLPREVAVFLWIDFSCIDQDDEESKRKGARSLAAYMQLSDAVFTPYAESLYPSSGGGGEARKESDWWGTFANPLGEVCNTPWPNSYRSLQD----FCCRAWCRLEVLLCATLPLRDGGFRYFAARGEEGRAQDRPHFIYGDYQRRRKLPPEALARSVDEAWASSLDPLEGFLSNQDDM---EAIVHGMGP 2028
F K RS LV + L+ RN +VF+SHRW SG H PD + K + L+ L I +L + LWID+ IDQD +K KG +SL Y++ SDA+ TP+ +++Y EA +E + F PL + P+ +R L+D + RAWCRLE L L G+ +F RG RPHFI GD+ P L + A L+P EG + + D+ A+V G P
Sbjct: 90 FIKQGQIPRSDHLVDHHLLEHIHEKGRNKFCIVFISHRWW--SGLEP--IPH----------PDKGTIKFHLLIRSLKLIQQALDEGTEMLLWIDYFGIDQDSTHNKIKGIKSLPYYIKNSDALLTPFTDTIY-------EAGEEHE---DFPFPL--MGTMPFLKRFRCLRDDPNEYFGRAWCRLEYYLGTNAQLPPDGYSFFKRRGLV--RAGRPHFIAGDHG---DGVPNILPPLTSQLLAQ-LEPTEGAVHDTQDLVHIRALVEGNPP 329
BLAST of mRNA_C-linearis_contig101.740.1 vs. uniprot
Match: A0A7S0W156_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W156_9CRYP) HSP 1 Score: 71.6 bits (174), Expect = 1.340e-9 Identity = 66/225 (29.33%), Postives = 92/225 (40.89%), Query Frame = 1 Query: 1294 PYDSLDRNSAFVVFVSHRWINDSGRSTGFRQHGAAGNGGDGTPD-VDSAKHYFLVEGLSSIL-ASLPREVA--VFLWIDFSCIDQDDEESKRKGARSLAAYMQLSDAVFTP-----YAESLYPSSGGGGEARKESDWWGTFANPLGEVCNTPWPNSYRS--LQDFCCRAWCRLEVLLCATLPLRDGGFRYFAARGEEGRAQD------RPHFIYGDYQRRRKLPP 1917
P S D N VFVSHRW++ G DG PD + +KH +VE + +L A +E V LW DF C+DQD E + L + D V TP +A+ YP G WG + YR+ Q++ RAWC LE + A +P+ G R A E+G ++ R H +YG + +L P
Sbjct: 23 PKSSFDANKTLFVFVSHRWLSPGGA--------------DGHPDDAEGSKHRLVVEAIEKLLKAKHMKEKGWEVALWFDFGCVDQDLENPAAE-LDELHEIITQVDVVLTPVHDPGHADWEYPDDG-----------WGDQYS------------EYRAAAFQEYWGRAWCVLEAMSGACMPVEGGAAR--AEAFEDGAIKNAILAGRRNHIVYGTKESVNRLAP 207
BLAST of mRNA_C-linearis_contig101.740.1 vs. uniprot
Match: A0A7S1FAG8_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FAG8_NOCSC) HSP 1 Score: 72.0 bits (175), Expect = 5.420e-9 Identity = 60/204 (29.41%), Postives = 89/204 (43.63%), Query Frame = 1 Query: 1297 YDSLDRNSAFVVFVSHRWINDSGRSTGFRQHGAAGNGGDGTPD-VDSAKHYFLVEGLSSILASLPREV-AVFLWIDFSCIDQDDEESKRKGARSLAAYMQLSDAVFTPYAESLYPSSGGGGEARKESDWWGTFANPLGEVCNTPWPNSYRSLQDFCCRAWCRLEVLLCATLPLRDGG----FRYFAARGEEGRAQDRPHFIYGD 1890
Y S +R+S VFVS RW+ + GNG +G PD V K +VE + +L E V +W+D+ C+DQD + + + L + M + D + TP + + S + W F E W N +R RAWCR+E LL A +P+ D F+ A R + RPH I+G+
Sbjct: 85 YQSFNRSSTCFVFVSQRWL-------------SPGNGPEGHPDTVHDDKFKLIVEACERLQVALLFEGWKVAIWMDYMCVDQDARPTW-EFLQMLTSVMTVCDVMLTPVVDVRHTSW------QPPQQWNDCFDEYKAEE----WLNYWR-------RAWCRVEALLAAAMPMMDTSRAQLFKAGALRNAISKGH-RPHMIFGN 256
BLAST of mRNA_C-linearis_contig101.740.1 vs. uniprot
Match: A0A7S1HMH1_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HMH1_HEMAN) HSP 1 Score: 68.6 bits (166), Expect = 3.730e-8 Identity = 73/266 (27.44%), Postives = 104/266 (39.10%), Query Frame = 1 Query: 1198 PEAPMFVLPLAGLSAARCFPKYQNAM----------RSGALVPYDSLDRNSAFVVFVSHRWINDSGRSTGFRQHGAAGNGGDGTPDVDSAKHYFLVEGLSSILA---SLPREVAVFLWIDFSCIDQDDEESKRKGARSLAAYMQLSDAVFTP-----YAESLYPSSGGGGEARKESDWWGTFANPLGEVCNTPWPNSYRSL--QDFCCRAWCRLEVLLCATLPLRDGGFRYFAARGEEGRAQD------RPHFIYGDYQRRRKLPP 1917
P+ P FV P A A P+ +A A P S D +FVSH+WI S H D D++K +V+ + +L + V LWIDFSC+DQDD E + SL + D TP +A YP S G W ++ YR++ Q++ RAWC +E + A++P+ + R A EEG + R H +YG +R R L P
Sbjct: 20 PQDPWFV-PFASFKAHGAIPRRGHAEGYTHPLTGLGNENACRPKSSFDAAKTLFLFVSHKWITPS------EAH---------PDDADASKFKLIVDAVEKLLQFKHMKANDWCVALWIDFSCVDQDDAELSGE-VSSLHEVIAQCDVFLTPVHDPGHALWAYPVSSG---------WRDEYSE-------------YRAVGFQEYWTRAWCVVEAMSAASMPVLNLQERLDAL--EEGAVRTGLMCGRRVHVVYGTKERVRGLQP 244
BLAST of mRNA_C-linearis_contig101.740.1 vs. uniprot
Match: A0A7S1DJT3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DJT3_HEMAN) HSP 1 Score: 68.9 bits (167), Expect = 4.640e-8 Identity = 64/220 (29.09%), Postives = 88/220 (40.00%), Query Frame = 1 Query: 1303 SLDRNSAFVVFVSHRWINDSGRSTGFRQHGAAGNGGDGTPD-VDSAKHYFLVEGLSSILASLPREV---AVFLWIDFSCIDQDDEESKRKGARSLAAYMQLSDAVFTP-----YAESLYPSSGGGGEARKESDWWGTFANPLGEVCNTPWPNSYRSLQDFCCRAWCRLEVLLCATLPLRDGGFRYFAARGEEGRAQD------RPHFIYGDYQRRRKLPP 1917
S D + VFVSHRW++ G DG PD V+ +KH +VE + +L + V LWIDF C+DQD E + L + +D + TP +AE YP W F V S Q++ RAWC LE + A +P+ G R A EEG ++ R H +YG + PP
Sbjct: 119 SFDGSKTLFVFVSHRWLSPGGA--------------DGHPDDVEGSKHKLIVEAVEKLLKGKHMKAEDWGVALWIDFGCVDQDLENPAAE-LDELHEIIAQADVLLTPVHDPGHAEWEYPGL------------WNDFYAEYKAV----------SFQEYWGRAWCVLEAMSGACMPVEGGVGR--AEVFEEGAIKNAILGGRRNHIVYGTKESVLVRPP 299
BLAST of mRNA_C-linearis_contig101.740.1 vs. uniprot
Match: A0A7S0Z2F6_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z2F6_9CRYP) HSP 1 Score: 66.6 bits (161), Expect = 2.790e-7 Identity = 62/225 (27.56%), Postives = 89/225 (39.56%), Query Frame = 1 Query: 1294 PYDSLDRNSAFVVFVSHRWINDSGRSTGFRQHGAAGNGGDGTPD-VDSAKHYFLVEGLSSILASLPREVA---VFLWIDFSCIDQDDEESKRKGARSLAAYMQLSDAVFTP-----YAESLYPSSGGGGEARKESDWWGTFANPLGEVCNTPWPNSYRS--LQDFCCRAWCRLEVLLCATLPLRDGGFRYFAARGEEGRAQD------RPHFIYGDYQRRRKLPP 1917
P S D VFVSHRW++ G DG PD + +KH +VE + +L + V LW DF C+DQD E + L + D V TP +A+ YP G WG + YR+ Q++ RAWC LE + A +P+ G R A E+G ++ R H +YG + ++ P
Sbjct: 87 PKSSFDAMRTLFVFVSHRWLSPGGA--------------DGHPDDAEGSKHRLVVEAIEKLLKVKHMKAEKWEVALWFDFGCVDQDLENPAAE-LDELHEIITQVDVVLTPVHDPGHADWEYPDDG-----------WGDQYS------------EYRAAAFQEYWGRAWCVLEAMSGACMPVEGGAAR--AEAFEDGAIKNAILAGRRNHIVYGTKESVARMAP 271 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.740.1 >prot_C-linearis_contig101.740.1 ID=prot_C-linearis_contig101.740.1|Name=mRNA_C-linearis_contig101.740.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1207bp MGCSRSKEEVPETTSRPGRIETRIPEIEEDHKKSSTKTFDTHTTEASSYSback to top mRNA from alignment at C-linearis_contig101:303664..317362- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.740.1 ID=mRNA_C-linearis_contig101.740.1|Name=mRNA_C-linearis_contig101.740.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=13699bp|location=Sequence derived from alignment at C-linearis_contig101:303664..317362- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:303664..317362- >mRNA_C-linearis_contig101.740.1 ID=mRNA_C-linearis_contig101.740.1|Name=mRNA_C-linearis_contig101.740.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=7242bp|location=Sequence derived from alignment at C-linearis_contig101:303664..317362- (Chordaria linearis ClinC8C monoicous)back to top |