prot_C-linearis_contig101.717.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig101.717.1
Unique Nameprot_C-linearis_contig101.717.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length333
Homology
[Close]
BLAST of mRNA_C-linearis_contig101.717.1 vs. uniprot
Match: D8LN78_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN78_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 9.910e-21
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 0 
Query:    6 WAELAEGVEFEGLSGKVEMDSLGNRKGMDVSFWLVESLTVGGSSYTSGMEAARYHSASGTLQLLRNIHWPGTLS 79
            WA LA GV FEGLSGKVEMD LGNR GMDVSF L+E +T  G+SY SG EAARY SAS T+QLLR++ WP +LS
Sbjct:  484 WAGLAAGVGFEGLSGKVEMDDLGNRMGMDVSFRLMEGVTADGASYVSGKEAARYDSASETVQLLRHMQWPASLS 557
[Close]
BLAST of mRNA_C-linearis_contig101.717.1 vs. uniprot
Match: A0A6H5JK37_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK37_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.100e-20
Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 0 
Query:    6 WAELAEGVEFEGLSGKVEMDSLGNRKGMDVSFWLVESLTVGGSSYTSGMEAARYHSASGTLQLLRNIHWPGTLS 79
            WA LA GV FEGLSGK+EMD LGNRKGMDVSF L+E +T  G S+ SG EAARY SAS T+QLLR + WP +LS
Sbjct:  466 WAGLAAGVGFEGLSGKLEMDDLGNRKGMDVSFRLMEGVTAYGISFVSGKEAARYDSASETVQLLRQMQWPASLS 539
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.717.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN78_ECTSI9.910e-2170.27Tyrosine kinase specific for activated (GTP-bound)... [more]
A0A6H5JK37_9PHAE8.100e-2068.92Protein kinase domain-containing protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:100035..101971 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.717.1mRNA_C-linearis_contig101.717.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig101 100035..101971 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig101.717.1 ID=prot_C-linearis_contig101.717.1|Name=mRNA_C-linearis_contig101.717.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=333bp
GGRVRWAELAEGVEFEGLSGKVEMDSLGNRKGMDVSFWLVESLTVGGSSY
TSGMEAARYHSASGTLQLLRNIHWPGTLSYGDRRAAVVPLPQPMRGTRRT
GKGAGAGAGEGGTRTIVEGWIDGLMFALDRLLTTPASGAVLLRLAALGAL
VVAVGVKLKLLGAADAEKSAGVKAAVALAAARVAAERRVENGREGDGGSA
EDAAPPPSRTAAPRVARATRRGVSQQELLPAAPRPLPLPPPPPPPPPPPP
PPPQSPRTLTFEQESHTHLTVEPAASVGGGGGTQQGPVAQQPAGSAGVLA
PGMRPVALGKLAQNLQEGCLETATTASQGSGSG
back to top