mRNA_C-linearis_contig101.717.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig101.717.1
Unique NamemRNA_C-linearis_contig101.717.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig101.717.1 vs. uniprot
Match: D8LN78_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN78_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 9.910e-21
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:   16 WAELAEGVEFEGLSGKVEMDSLGNRKGMDVSFWLVESLTVGGSSYTSGMEAARYHSASGTLQLLRNIHWPGTLS 237
            WA LA GV FEGLSGKVEMD LGNR GMDVSF L+E +T  G+SY SG EAARY SAS T+QLLR++ WP +LS
Sbjct:  484 WAGLAAGVGFEGLSGKVEMDDLGNRMGMDVSFRLMEGVTADGASYVSGKEAARYDSASETVQLLRHMQWPASLS 557
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BLAST of mRNA_C-linearis_contig101.717.1 vs. uniprot
Match: A0A6H5JK37_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK37_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.100e-20
Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:   16 WAELAEGVEFEGLSGKVEMDSLGNRKGMDVSFWLVESLTVGGSSYTSGMEAARYHSASGTLQLLRNIHWPGTLS 237
            WA LA GV FEGLSGK+EMD LGNRKGMDVSF L+E +T  G S+ SG EAARY SAS T+QLLR + WP +LS
Sbjct:  466 WAGLAAGVGFEGLSGKLEMDDLGNRKGMDVSFRLMEGVTAYGISFVSGKEAARYDSASETVQLLRQMQWPASLS 539
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN78_ECTSI9.910e-2170.27Tyrosine kinase specific for activated (GTP-bound)... [more]
A0A6H5JK37_9PHAE8.100e-2068.92Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:100035..101971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue1.4e-19
Seed eggNOG ortholog2880.D8LN78
KEGG koko:K17535
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Exons3
Model size1001
Cds size999
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.717.1prot_C-linearis_contig101.717.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig101 100035..101971 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927358.5296288-CDS-C-linearis_contig101:100034..1000971622927358.5296288-CDS-C-linearis_contig101:100034..100097Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 100035..100097 +
1690879650.902339-CDS-C-linearis_contig101:100034..1000971690879650.902339-CDS-C-linearis_contig101:100034..100097Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 100035..100097 +
1622927358.5422952-CDS-C-linearis_contig101:100399..1005371622927358.5422952-CDS-C-linearis_contig101:100399..100537Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 100400..100537 +
1690879650.9145358-CDS-C-linearis_contig101:100399..1005371690879650.9145358-CDS-C-linearis_contig101:100399..100537Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 100400..100537 +
1622927358.5553749-CDS-C-linearis_contig101:101173..1019711622927358.5553749-CDS-C-linearis_contig101:101173..101971Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 101174..101971 +
1690879650.9263852-CDS-C-linearis_contig101:101173..1019711690879650.9263852-CDS-C-linearis_contig101:101173..101971Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 101174..101971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig101.717.1

>prot_C-linearis_contig101.717.1 ID=prot_C-linearis_contig101.717.1|Name=mRNA_C-linearis_contig101.717.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=333bp
GGRVRWAELAEGVEFEGLSGKVEMDSLGNRKGMDVSFWLVESLTVGGSSY
TSGMEAARYHSASGTLQLLRNIHWPGTLSYGDRRAAVVPLPQPMRGTRRT
GKGAGAGAGEGGTRTIVEGWIDGLMFALDRLLTTPASGAVLLRLAALGAL
VVAVGVKLKLLGAADAEKSAGVKAAVALAAARVAAERRVENGREGDGGSA
EDAAPPPSRTAAPRVARATRRGVSQQELLPAAPRPLPLPPPPPPPPPPPP
PPPQSPRTLTFEQESHTHLTVEPAASVGGGGGTQQGPVAQQPAGSAGVLA
PGMRPVALGKLAQNLQEGCLETATTASQGSGSG
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mRNA from alignment at C-linearis_contig101:100035..101971+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.717.1 ID=mRNA_C-linearis_contig101.717.1|Name=mRNA_C-linearis_contig101.717.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1937bp|location=Sequence derived from alignment at C-linearis_contig101:100035..101971+ (Chordaria linearis ClinC8C monoicous)
GGCGGGCGTGTTCGGTGGGCGGAACTGGCGGAAGGCGTTGAGTTCGAGGG
TCTCTCCGGCAAGGTATACCTAGGGTTTCTGTTGTTTGTTTTTCGTGCGT
GTTTGCCTGCTTTTGTTTGCTTGCTTGCTTTCCTGCACCTGAAACGATAG
ACGGGTGGTGGAGCGGGCGCGGGTTCGGGCGGGTCACGTGAGAGGTGCCG
ATTCGAACATGGTGTGGGCGCGCGGGGCCCGGTGATTGACTGGCTCATCG
ATGGGAGCGCCCCACCACACCATGTCTATGATAACTCTGGTTGGCCCTCG
GTTCCGCCTTCCAACCCCCCAATAAGTAGATGATGCGATGTGCGATCCAA
TATGACGACAATTAGGTCGAGATGGACAGTCTGGGGAACCGCAAGGGGAT
GGATGTGTCCTTCTGGTTGGTCGAGAGCCTCACCGTGGGTGGGAGCTCGT
ACACGTCGGGAATGGAGGCGGCGAGGTACCACTCCGCTTCAGGGACTCTG
CAGGTATGTATGCAGGTGGTTTCGTTGTCTGCACGTGCACACCCGCGTTG
ACTGGCGTCTTCGTTTGTTGTTGCACGGCCGCGCTCGTCAGCTGAACCAA
CGGCAGCAGTGCGTAAGTTGAACATTCGAGATCGACAACTGCTGCGAAAA
AAACGACAAACCAAAATCTGGGGCCGTTTTGGGTTGCTGCCGGGGTTATG
TATGTTCTCAGGACGTTGATGGCTGCCTTTTAGAGTCGGTTCTGATGGTA
CTTGTCGAGCATACTGTACTGTTGTACTCTGGTCAGTTGGCTCCGGCCAA
AGTTGAAGGCACGCCTGCGCCCTTTCCTCGACCGTGGTTGAGGGCCGGTT
TTCTGCCCCCCCCCCAAAAAAAAAACATGTTTTCCTTCTCGTTCGTACAG
TATGGCCTCGGTTTTTCCCCGCCTTTCGGGCGGATTCCTCTCGGGGCGGA
ATCTAGAATGGCTGCGTGTTGTACTGGCGGTGTGTGGGCAACGATTCGAA
CTGTCTGTCGTATGTTGCTATTAAAGAAACGCAACTTCTTGAAGTAACAC
ACACCAACCCGCCCCCACCCGCCCAAACAACAAACCACGCCAAACGCCAC
CACCACCACCACCATCACCACCATCACCACTGTCAACAGCTGCTGCGAAA
CATCCACTGGCCCGGGACGCTGTCGTACGGCGATCGGCGAGCGGCGGTGG
TTCCCTTACCACAGCCGATGAGAGGTACTAGGAGAACAGGCAAGGGTGCC
GGTGCCGGTGCTGGTGAAGGCGGCACCAGGACCATCGTGGAAGGGTGGAT
CGACGGTCTGATGTTCGCGCTCGACCGCCTCCTCACCACACCAGCGTCCG
GCGCTGTGCTGCTCAGGTTAGCCGCGCTGGGGGCCCTGGTTGTAGCCGTG
GGGGTGAAGCTCAAGCTTTTGGGGGCAGCGGACGCGGAGAAGTCGGCGGG
GGTGAAGGCAGCAGTGGCGCTGGCGGCGGCGAGAGTCGCAGCAGAGCGAA
GGGTAGAGAACGGCAGGGAGGGTGATGGCGGCAGCGCCGAAGACGCGGCC
CCTCCTCCTTCTCGCACAGCCGCGCCAAGGGTGGCGAGGGCGACAAGACG
TGGCGTTTCGCAGCAGGAGCTTCTTCCTGCTGCACCCCGTCCTCTTCCTC
TTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCCGCCGCCGCAG
TCCCCTCGGACGCTGACGTTTGAGCAAGAGAGTCACACTCATCTGACGGT
TGAGCCCGCCGCTTCGGTGGGCGGCGGCGGCGGCACCCAGCAGGGGCCGG
TAGCCCAGCAGCCGGCAGGCAGCGCTGGCGTGCTGGCGCCGGGGATGCGC
CCTGTCGCGTTGGGCAAGTTGGCGCAAAATCTCCAGGAAGGGTGTTTGGA
GACGGCAACAACAGCCTCCCAAGGATCAGGATCCGGG
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Coding sequence (CDS) from alignment at C-linearis_contig101:100035..101971+

>mRNA_C-linearis_contig101.717.1 ID=mRNA_C-linearis_contig101.717.1|Name=mRNA_C-linearis_contig101.717.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1998bp|location=Sequence derived from alignment at C-linearis_contig101:100035..101971+ (Chordaria linearis ClinC8C monoicous)
GGCGGGCGTGTTCGGTGGGCGGAACTGGCGGAAGGCGTTGAGTTCGAGGG
TCTCTCCGGCAAGGGCGGGCGTGTTCGGTGGGCGGAACTGGCGGAAGGCG
TTGAGTTCGAGGGTCTCTCCGGCAAGGTCGAGATGGACAGTCTGGGGAAC
CGCAAGGGGATGGATGTGTCCTTCTGGTTGGTCGAGAGCCTCACCGTGGG
TGGGAGCTCGTACACGTCGGGAATGGAGGCGGCGAGGTACCACTCCGCTT
CAGGGACTCTGCAGGTCGAGATGGACAGTCTGGGGAACCGCAAGGGGATG
GATGTGTCCTTCTGGTTGGTCGAGAGCCTCACCGTGGGTGGGAGCTCGTA
CACGTCGGGAATGGAGGCGGCGAGGTACCACTCCGCTTCAGGGACTCTGC
AGCTGCTGCGAAACATCCACTGGCCCGGGACGCTGTCGTACGGCGATCGG
CGAGCGGCGGTGGTTCCCTTACCACAGCCGATGAGAGGTACTAGGAGAAC
AGGCAAGGGTGCCGGTGCCGGTGCTGGTGAAGGCGGCACCAGGACCATCG
TGGAAGGGTGGATCGACGGTCTGATGTTCGCGCTCGACCGCCTCCTCACC
ACACCAGCGTCCGGCGCTGTGCTGCTCAGGTTAGCCGCGCTGGGGGCCCT
GGTTGTAGCCGTGGGGGTGAAGCTCAAGCTTTTGGGGGCAGCGGACGCGG
AGAAGTCGGCGGGGGTGAAGGCAGCAGTGGCGCTGGCGGCGGCGAGAGTC
GCAGCAGAGCGAAGGGTAGAGAACGGCAGGGAGGGTGATGGCGGCAGCGC
CGAAGACGCGGCCCCTCCTCCTTCTCGCACAGCCGCGCCAAGGGTGGCGA
GGGCGACAAGACGTGGCGTTTCGCAGCAGGAGCTTCTTCCTGCTGCACCC
CGTCCTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCC
GCCGCCGCCGCAGTCCCCTCGGACGCTGACGTTTGAGCAAGAGAGTCACA
CTCATCTGACGGTTGAGCCCGCCGCTTCGGTGGGCGGCGGCGGCGGCACC
CAGCAGGGGCCGGTAGCCCAGCAGCCGGCAGGCAGCGCTGGCGTGCTGGC
GCCGGGGATGCGCCCTGTCGCGTTGGGCAAGTTGGCGCAAAATCTCCAGG
AAGGGTGTTTGGAGACGGCAACAACAGCCTCCCAAGGATCAGGATCCGGG
CTGCTGCGAAACATCCACTGGCCCGGGACGCTGTCGTACGGCGATCGGCG
AGCGGCGGTGGTTCCCTTACCACAGCCGATGAGAGGTACTAGGAGAACAG
GCAAGGGTGCCGGTGCCGGTGCTGGTGAAGGCGGCACCAGGACCATCGTG
GAAGGGTGGATCGACGGTCTGATGTTCGCGCTCGACCGCCTCCTCACCAC
ACCAGCGTCCGGCGCTGTGCTGCTCAGGTTAGCCGCGCTGGGGGCCCTGG
TTGTAGCCGTGGGGGTGAAGCTCAAGCTTTTGGGGGCAGCGGACGCGGAG
AAGTCGGCGGGGGTGAAGGCAGCAGTGGCGCTGGCGGCGGCGAGAGTCGC
AGCAGAGCGAAGGGTAGAGAACGGCAGGGAGGGTGATGGCGGCAGCGCCG
AAGACGCGGCCCCTCCTCCTTCTCGCACAGCCGCGCCAAGGGTGGCGAGG
GCGACAAGACGTGGCGTTTCGCAGCAGGAGCTTCTTCCTGCTGCACCCCG
TCCTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGC
CGCCGCCGCAGTCCCCTCGGACGCTGACGTTTGAGCAAGAGAGTCACACT
CATCTGACGGTTGAGCCCGCCGCTTCGGTGGGCGGCGGCGGCGGCACCCA
GCAGGGGCCGGTAGCCCAGCAGCCGGCAGGCAGCGCTGGCGTGCTGGCGC
CGGGGATGCGCCCTGTCGCGTTGGGCAAGTTGGCGCAAAATCTCCAGGAA
GGGTGTTTGGAGACGGCAACAACAGCCTCCCAAGGATCAGGATCCGGG
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