mRNA_C-linearis_contig100.704.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig100.704.1 vs. uniprot
Match: D7FZD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD7_ECTSI) HSP 1 Score: 309 bits (791), Expect = 5.130e-102 Identity = 153/250 (61.20%), Postives = 184/250 (73.60%), Query Frame = 1
Query: 4 RVPLMECGDLPCGFQTRMTHRTLENLASRYTFHFVGDSTTRRLAESFVSIATDKASGHEYYHERRNLTIGELQVKFYWAPFCEASGHEPGVGVGLEEVLDDQEQKNRLTGGRRAVIITAFGVWDAVHGTGDEASLNACSDVVTKLTNVAQLHTTVQETAVNTDASPPMVFLLQNNPFLADSEEDHFLSDLHQIQRQIVENSEEGELYIVRDRDSIYERMSCFRMGESIHFMDPVKLVEGKMLWDLIALVA 753
R+PLM GDLPCGF+TR+ T E+LASRY HF+GDST+RRL ESF+SIAT S H YYHE RNLT+ LQV F+WAP+C +E L E++D+Q L GGRRA+I+TAFGVWD+ HG GDEA+L C+D V L VAQ TA N ASPP+VFLLQNNPFL SE+D FL DLHQIQR+IV++ E+ +Y+V DR+SI+ R+SC+RM ESIHF DPVKLVEGKMLWDLI LVA
Sbjct: 93 RIPLMGSGDLPCGFETRLPTSTFEDLASRYAIHFMGDSTSRRLVESFISIATGNRSAHVYYHESRNLTVDGLQVNFHWAPYCRQVKNE-----SLHEIMDNQA----LDGGRRAIIVTAFGVWDSSHGGGDEAALGVCADAVRSLVQVAQPPPAGSTTAENIAASPPLVFLLQNNPFLPGSEQDLFLRDLHQIQREIVDSGEQEAVYLVHDRESIFNRLSCYRMSESIHFNDPVKLVEGKMLWDLIELVA 333
BLAST of mRNA_C-linearis_contig100.704.1 vs. uniprot
Match: D7G0T6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T6_ECTSI) HSP 1 Score: 194 bits (494), Expect = 4.320e-56 Identity = 123/320 (38.44%), Postives = 165/320 (51.56%), Query Frame = 1
Query: 1 HRVPLMECGDLPCGFQTRMTHRTLENLASRYTFHFVGDSTTRRLAESFVSIATDKASGHEYYHERRNLTIGELQVKFYWAPFCEASGHEPGVGVGLEEVLDDQEQKNRLTGGRRAVIITAFGVWDAV------------------------HGTGDEASLNACSDVVTKLTNVAQ-------------------LH-----TTVQETAVN--------------TDASPPMVFLLQNNPFLADSEEDHFLSDLHQIQRQIVENSEEGE--------LYIVRDRDSIYERMSCFRMGESIHFMDPVKLVEGKMLWDLIALV 750
+R+P ME G LPCGF+ R + LE++AS++TFHF+GDST RRL ESFVSI T + S H+ H + + G L+ +FYWAPFC S VG L V+D + R G +R VIITAFGV D+ +G+ A+L AC +L A +H TT T N TD +PP+VFL+QNN + +S ED++L +L +IQR V+ E GE +Y+V D S++ +SC+R IHF +PVKLVEGKMLWDL+ALV
Sbjct: 114 YRLPHMESGVLPCGFEERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHDMVHSDLDFSTGNLETRFYWAPFCFGS---ESVGAKLATVMDGVKTAKR--GDKRTVIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAWADPTAEKGQWSKAVHASPNTTTRSTTETNGVSFSFGAPGTTAATDPTPPLVFLMQNNRYPPNSPEDNYLEELRRIQRGEVQEWEAGEGNEDAEGGIYLVDDSVSLFRNLSCYRERNPIHFHEPVKLVEGKMLWDLLALV 428
BLAST of mRNA_C-linearis_contig100.704.1 vs. uniprot
Match: A0A6H5L6U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U4_9PHAE) HSP 1 Score: 170 bits (430), Expect = 5.390e-46 Identity = 125/344 (36.34%), Postives = 162/344 (47.09%), Query Frame = 1
Query: 1 HRVPLMECGDLPCGFQTRMTHRTLENLASRYTFHFVGDSTTRRLAESFVSIATDKASGHEYYHERRNLTIGELQVKFYWAPFCEASGHEPGVGVGLEEVLDDQEQKNRLTGGRRAVIITAFGVWDAV--------HGTGD----------------EASLNACSDVVTKLTNVA------------------------QL---------HTTVQ--------------------ETAVNTDASP-------PMVFLLQNNPFLADSEEDHFLSDLHQIQRQIV--------ENSEEGE--LYIVRDRDSIYERMSCFRMGESIHFMDPVKLVEGKMLWDLIALV 750
+R+ M G LPCGF+ R+ +E++AS+Y+FHF+GDST+RRL ESFVSI T + S H N + G L+V FYWAP C SG E VG L V+D G+RAVIITAFGV DA HG+ A+L AC D T+L A QL H T Q E A++ A P P++FL+QNN + S E+ F DLH+IQRQ V ++GE L++V D +Y +SC+R IHF +PVKL+EGKMLWDL+ LV
Sbjct: 99 YRLHHMHSGGLPCGFEERLGKEAMEDIASKYSFHFIGDSTSRRLGESFVSIFTGRGSTHPVVQRDINFSSGNLKVHFYWAPLC--SGPE-SVGAMLTTVMD---AVLAAKDGKRAVIITAFGVHDAFELQHAANGHGSPSYQSTLPQDIVEKDGMRAAALGACRDATTQLVRTAAATAVPGTAAPPVEEEQSPGDAQHQLPNVSTQVGRHETSQKQAAGIPPNNVRGGSVGAGKEDALDASAPPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHRIQRQAVGEWEASEGSKGDDGERGLFLVDDSVGLYGNLSCYRSANPIHFDEPVKLMEGKMLWDLLVLV 436
BLAST of mRNA_C-linearis_contig100.704.1 vs. uniprot
Match: A0A6H5JGU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU9_9PHAE) HSP 1 Score: 158 bits (399), Expect = 7.050e-41 Identity = 121/388 (31.19%), Postives = 160/388 (41.24%), Query Frame = 1
Query: 1 HRVPLMECGDLPCGFQTRMTHRTLENLASRYTFHFVGDSTTRRLAESFVSIATDKASGHEYYHERRNLTIGELQVKFYWAPFCEASGHEPGVGVGLEEVL------------DDQEQKNRLTGG--RRAVIITAFGVWDAVH----------------GTGDEA---------SLNACSDVVTKLTNVAQLHTTVQ----------------------------ETAVNTDAS----------------------------------------------------PPMVFLLQNNPFLADSEEDHFLSDLHQIQRQIVENSEEGE---------------LYIVRDRDSIYERMSCFRMGESIHFMDPVKLVEGKMLWDLIALVAGVA 762
+RVPLME G+ CGF+T M L +LA +Y F F+GDSTTRRLAESFVSI + +AS H H R +++ G+L+V F WAP C G G+ + + L +D G RR VI TAFGV DA G EA +L C D +L VA + VN D +VFLLQNNPF SE D+FL LH+IQ Q+++ + + ++++RDRDS+Y MSC+R+ SIHF +PVKLVEGKMLW L+ +AG +
Sbjct: 256 YRVPLMESGNASCGFETLMPDEKLLDLALKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDG---GISAAVRDALGFRSSTYGSGNNNDGXXXXXXENGSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVAAQGPTAAALETCRDATRELVEVAAAXXXXXXXXXXXDGGGDVGNNPSLSEATGEGGEGQVVVNADGRRDGIADKKLRGGGGVSSEVAVHESDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXLVFLLQNNPFNPRSELDYFLQQLHRIQEQVIDEAAAKQGCEXXXXXXXXXXXRVFLLRDRDSLYSSMSCYRIDGSIHFHEPVKLVEGKMLWHLVE-IAGAS 639
BLAST of mRNA_C-linearis_contig100.704.1 vs. uniprot
Match: D7G0V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V6_ECTSI) HSP 1 Score: 149 bits (375), Expect = 2.810e-38 Identity = 115/336 (34.23%), Postives = 150/336 (44.64%), Query Frame = 1
Query: 34 PCGFQTRMTHRTLENLASRYTFHFVGDSTTRRLAESFVSIATDKASGHEYYHERRNLTIGELQVKFYWAPFCEASGHEPGVGVGLEEVLDDQEQKNRLTGGRRAVIITAFGVWDAV--------HGTGD----------------EASLNACSDVVTKLTNVA------------------------QL-----------HTTVQ---------------------ETAVNTDASP-------PMVFLLQNNPFLADSEEDHFLSDLHQIQRQIVENSEEGE----------LYIVRDRDSIYERMSCFRMGESIHFMDPVKLVEGKMLWDLIALV 750
PC Q R+ +E +AS+Y+FH +GDST+RRL ESFVSI T + S H R+ + G L+V FYWAP C SG E VG L V+D G+RAVIITA+GV DA HG+ A+L AC D T+L A QL H T + +T + A P P++FL+QNN + S E+ F DLH IQRQ+V E E L++V + +Y +SC+R IHF +PVKL+EGKMLWDL+ LV
Sbjct: 77 PCVSQERLGKDAMEYIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHRIAQRDRDFSSGNLKVHFYWAPLC--SGPE-SVGAMLASVMD---AVRAAKDGKRAVIITAYGVHDAFELHHAANGHGSPSYKSALPQDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVSTKVEVGPHETSEKQAAGIPPHNVRGGSVGAGNEDTLLGASAPPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHIIQRQVVGEWEASEGSKGDGGERGLFLVDNSVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLLVLV 406
BLAST of mRNA_C-linearis_contig100.704.1 vs. uniprot
Match: D7FUL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL3_ECTSI) HSP 1 Score: 120 bits (302), Expect = 1.620e-27 Identity = 66/143 (46.15%), Postives = 80/143 (55.94%), Query Frame = 1
Query: 1 HRVPLMECGDLPCGFQTRMTHRTLENLASRYTFHFVGDSTTRRLAESFVSIATDKASGHEYYHERRNLTIGELQVKFYWAPFCEASGHEPGVGVGLEEVL---------------DDQEQKNRLTGGRRAVIITAFGVWDAVH 384
+RVPLME GD CGF+TRM L +LAS+Y F F+GDSTTRRLAESFVSI + +AS H H R +++ G+L+V F WAP C G GV + + L DD RR VI TAFGV DA
Sbjct: 228 YRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVGG---GVSAAVRDALGFRSSTYGSDNNYDGDDXXXXXXXXSPRRTVIFTAFGVHDATE 367
BLAST of mRNA_C-linearis_contig100.704.1 vs. uniprot
Match: A0A6H5JFC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC3_9PHAE) HSP 1 Score: 108 bits (269), Expect = 4.490e-24 Identity = 65/153 (42.48%), Postives = 89/153 (58.17%), Query Frame = 1
Query: 67 TLENLASRYTFHFVGDSTTRRLAESFVSIATDKASGHEYYHERRNLTIGELQVKFYWAPFCEASGHEPGVGVGLEEVLDDQEQKNRLTGGRRAVIITAFGVWDAVHGTGDEA-----------------------SLNACSDVVTKLTNVAQL 456
TLE+L+SRY FHFVGDSTTRRLAESFVSI T +AS H HER +++ G L+V F+WAP C + + + ++E++ Q + G RA+IITAFGV +A GD+A +LN C +V ++L +VA L
Sbjct: 78 TLEDLSSRYVFHFVGDSTTRRLAESFVSILTGQASPHFVVHERIDMSSGSLKVIFHWAPMCIDARSK--IQASIDEIVAAQLRN----GDARAIIITAFGVHNAHRLYGDQAGTLPRYTAPSSHDTFREEDAEAAALNVCEEVTSQLVHVANL 224 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig100.704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig100.704.1 >prot_C-linearis_contig100.704.1 ID=prot_C-linearis_contig100.704.1|Name=mRNA_C-linearis_contig100.704.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=251bp MECGDLPCGFQTRMTHRTLENLASRYTFHFVGDSTTRRLAESFVSIATDKback to top mRNA from alignment at C-linearis_contig100:567852..570966+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig100.704.1 ID=mRNA_C-linearis_contig100.704.1|Name=mRNA_C-linearis_contig100.704.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3115bp|location=Sequence derived from alignment at C-linearis_contig100:567852..570966+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig100:567852..570966+ >mRNA_C-linearis_contig100.704.1 ID=mRNA_C-linearis_contig100.704.1|Name=mRNA_C-linearis_contig100.704.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at C-linearis_contig100:567852..570966+ (Chordaria linearis ClinC8C monoicous)back to top |