prot_C-linearis_contig100.702.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig100.702.1
Unique Nameprot_C-linearis_contig100.702.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length72
Homology
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Match: A0A6H5KXS1_9PHAE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS1_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.860e-25
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = 0
Query:    1 VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLRSDVFCHGQLYVALSRTTSSKNI 72
            V +PRI    KVG+ G++F R Q PLRVCYA+TINKSQGQTLS++GLDLRSDVF HGQLYVALSR     +I
Sbjct:  194 VLIPRIRLNAKVGRNGIAFSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSI 265          
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Match: A0A6H5JNR7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNR7_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.370e-24
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = 0
Query:    1 VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLRSDVFCHGQLYVALSRTTSSKNI 72
            V +PRI    KVG+ G++F R Q PLRVCYA+TINKSQGQTLS++GLDLRSDVF HGQLYVALSR     +I
Sbjct:  303 VLIPRIRLNAKVGRNGIAFSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSI 374          
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Match: A0A6H5JZJ6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.810e-24
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = 0
Query:    1 VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLRSDVFCHGQLYVALSRTTSSKNI 72
            V +PRI    KVG+ G++F R Q PLRVCYA+TINKSQGQTLS++GLDLRSDVF HGQLYVALSR     +I
Sbjct:  680 VLIPRIRLNAKVGRNGIAFSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSI 751          
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Match: A0A6H5J9C5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C5_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.050e-22
Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 0
Query:    1 VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLRSDVFCHGQLYVALSRTTSSKNI 72
            V +PRI F+ KVG+ G+ F RKQFPLR  Y++TINKSQGQTLS++GLDLRS  F HGQLYVALSR+ +  +I
Sbjct:  353 VLIPRINFQGKVGRNGICFTRKQFPLRTAYSMTINKSQGQTLSKIGLDLRSSPFAHGQLYVALSRSQNRTSI 424          
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Match: A0A6H5KLU2_9PHAE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU2_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.540e-22
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 0
Query:    1 VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLRSDVFCHGQLYVALSRTTSSKNI 72
            V +PRI    KV + G++F R Q PLRV YA+TINKSQGQTLS++GLDLRSDVF HGQLYVALSR     +I
Sbjct:  226 VLIPRIRLNAKVWRNGIAFSRLQLPLRVRYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSI 297          
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Match: A0A6H5L0V2_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V2_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.690e-21
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 0
Query:    1 VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLRSDVFCHGQLYVALSRTTSSKNI 72
            V +PRI F  +VG+ G+SF R QFPLR  YA+TINKSQGQTL ++GLDLRS  F HGQLYVAL+R      +
Sbjct:  216 VLIPRINFTAQVGRNGISFMRVQFPLRSAYAMTINKSQGQTLKKIGLDLRSSPFAHGQLYVALTRAQKRSTV 287          
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Match: UPI001ED89BAA (ATP-dependent DNA helicase PIF1-like n=2 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED89BAA)

HSP 1 Score: 93.6 bits (231), Expect = 1.210e-20
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 0
Query:    1 VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLRSDVFCHGQLYVALSRTTSSKNI 72
            V +PRI F+  V   G+   RKQFPL+V Y +TINKSQGQTL +VG+DLRSDVF HGQLYVAL R  S  ++
Sbjct:  484 VMIPRIPFKFAVSNSGIEMIRKQFPLKVAYGVTINKSQGQTLEKVGVDLRSDVFSHGQLYVALGRVRSVNDV 555          
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Match: A0A3L6EMH1_MAIZE (ATP-dependent DNA helicase PIF1 n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6EMH1_MAIZE)

HSP 1 Score: 87.8 bits (216), Expect = 1.390e-20
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 0
Query:    1 VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLRSDVFCHGQLYVALSRTTS 68
            V +PRIT      K   +  R+QFP+RVCYA+TINKSQGQTLS+VGL L+  VF HGQLYVA+ RTTS
Sbjct:   33 VLIPRITLNTTDVKWPFTLQRRQFPVRVCYAVTINKSQGQTLSKVGLYLKKPVFTHGQLYVAVYRTTS 100          
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Match: A0A2G3AQD7_CAPCH (ATP-dependent DNA helicase n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3AQD7_CAPCH)

HSP 1 Score: 93.2 bits (230), Expect = 1.680e-20
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 0
Query:    1 VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLRSDVFCHGQLYVALSRTTSS 69
            V +PR  F+  +G  GM   R+QFPLR+ Y +T NKSQGQTL+RVG+DLRSDVF HGQLYVAL R   S
Sbjct:  521 VLIPRAIFDFSIGNHGMEMRRRQFPLRLAYGLTKNKSQGQTLNRVGVDLRSDVFSHGQLYVALGRVRKS 589          
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Match: UPI000E704C93 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E704C93)

HSP 1 Score: 89.4 bits (220), Expect = 1.820e-20
Identity = 39/72 (54.17%), Postives = 57/72 (79.17%), Query Frame = 0
Query:    1 VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLRSDVFCHGQLYVALSRTTSSKNI 72
            V +PRI F+  + +  ++  R+QFP+R+ YA+TINKSQGQ++  VG+DL++ VFCHGQLYVALSR T+++ I
Sbjct:  115 VMLPRILFQPNISELNINMLRRQFPIRLAYAMTINKSQGQSVQHVGIDLKTPVFCHGQLYVALSRCTAARRI 186          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXS1_9PHAE3.860e-2568.06ATP-dependent DNA helicase (Fragment) n=1 Tax=Ecto... [more]
A0A6H5JNR7_9PHAE2.370e-2468.06ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JZJ6_9PHAE3.810e-2468.06ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5J9C5_9PHAE1.050e-2265.28ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KLU2_9PHAE3.540e-2265.28ATP-dependent DNA helicase (Fragment) n=1 Tax=Ecto... [more]
A0A6H5L0V2_9PHAE5.690e-2161.11ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
UPI001ED89BAA1.210e-2061.11ATP-dependent DNA helicase PIF1-like n=2 Tax=Ischn... [more]
A0A3L6EMH1_MAIZE1.390e-2063.24ATP-dependent DNA helicase PIF1 n=1 Tax=Zea mays T... [more]
A0A2G3AQD7_CAPCH1.680e-2062.32ATP-dependent DNA helicase n=1 Tax=Capsicum chinen... [more]
UPI000E704C931.820e-2054.17ATP-dependent DNA helicase PIF1-like n=1 Tax=Papav... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003840DNA helicasePFAMPF02689Herpes_Helicasecoord: 30..72
e-value: 4.0E-6
score: 25.1
NoneNo IPR availableGENE3D3.40.50.300coord: 6..71
e-value: 1.9E-5
score: 27.0
NoneNo IPR availablePANTHERPTHR23274DNA HELICASE-RELATEDcoord: 3..68
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 18..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig100contigC-linearis_contig100:444818..445033 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig100.702.1mRNA_C-linearis_contig100.702.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig100 444818..445033 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig100.702.1 ID=prot_C-linearis_contig100.702.1|Name=mRNA_C-linearis_contig100.702.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=72bp
VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLR
SDVFCHGQLYVALSRTTSSKNI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003840DNA_helicase
IPR027417P-loop_NTPase