Homology
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Match:
A0A6H5KXS1_9PHAE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS1_9PHAE)
HSP 1 Score: 103 bits (257), Expect = 3.860e-25
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = 1
Query: 1 VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLRSDVFCHGQLYVALSRTTSSKNI 216
V +PRI KVG+ G++F R Q PLRVCYA+TINKSQGQTLS++GLDLRSDVF HGQLYVALSR +I
Sbjct: 194 VLIPRIRLNAKVGRNGIAFSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSI 265
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Match:
A0A6H5JNR7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNR7_9PHAE)
HSP 1 Score: 103 bits (257), Expect = 2.370e-24
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = 1
Query: 1 VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLRSDVFCHGQLYVALSRTTSSKNI 216
V +PRI KVG+ G++F R Q PLRVCYA+TINKSQGQTLS++GLDLRSDVF HGQLYVALSR +I
Sbjct: 303 VLIPRIRLNAKVGRNGIAFSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSI 374
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Match:
A0A6H5JZJ6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ6_9PHAE)
HSP 1 Score: 103 bits (257), Expect = 3.810e-24
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = 1
Query: 1 VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLRSDVFCHGQLYVALSRTTSSKNI 216
V +PRI KVG+ G++F R Q PLRVCYA+TINKSQGQTLS++GLDLRSDVF HGQLYVALSR +I
Sbjct: 680 VLIPRIRLNAKVGRNGIAFSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSI 751
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Match:
A0A6H5J9C5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C5_9PHAE)
HSP 1 Score: 99.4 bits (246), Expect = 1.050e-22
Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 1
Query: 1 VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLRSDVFCHGQLYVALSRTTSSKNI 216
V +PRI F+ KVG+ G+ F RKQFPLR Y++TINKSQGQTLS++GLDLRS F HGQLYVALSR+ + +I
Sbjct: 353 VLIPRINFQGKVGRNGICFTRKQFPLRTAYSMTINKSQGQTLSKIGLDLRSSPFAHGQLYVALSRSQNRTSI 424
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Match:
A0A6H5KLU2_9PHAE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU2_9PHAE)
HSP 1 Score: 95.9 bits (237), Expect = 3.540e-22
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1
Query: 1 VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLRSDVFCHGQLYVALSRTTSSKNI 216
V +PRI KV + G++F R Q PLRV YA+TINKSQGQTLS++GLDLRSDVF HGQLYVALSR +I
Sbjct: 226 VLIPRIRLNAKVWRNGIAFSRLQLPLRVRYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSI 297
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Match:
A0A6H5L0V2_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V2_9PHAE)
HSP 1 Score: 93.6 bits (231), Expect = 5.690e-21
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 1
Query: 1 VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLRSDVFCHGQLYVALSRTTSSKNI 216
V +PRI F +VG+ G+SF R QFPLR YA+TINKSQGQTL ++GLDLRS F HGQLYVAL+R +
Sbjct: 216 VLIPRINFTAQVGRNGISFMRVQFPLRSAYAMTINKSQGQTLKKIGLDLRSSPFAHGQLYVALTRAQKRSTV 287
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Match:
UPI001ED89BAA (ATP-dependent DNA helicase PIF1-like n=2 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED89BAA)
HSP 1 Score: 93.6 bits (231), Expect = 1.210e-20
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 1
Query: 1 VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLRSDVFCHGQLYVALSRTTSSKNI 216
V +PRI F+ V G+ RKQFPL+V Y +TINKSQGQTL +VG+DLRSDVF HGQLYVAL R S ++
Sbjct: 484 VMIPRIPFKFAVSNSGIEMIRKQFPLKVAYGVTINKSQGQTLEKVGVDLRSDVFSHGQLYVALGRVRSVNDV 555
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Match:
A0A3L6EMH1_MAIZE (ATP-dependent DNA helicase PIF1 n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6EMH1_MAIZE)
HSP 1 Score: 87.8 bits (216), Expect = 1.390e-20
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 1
Query: 1 VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLRSDVFCHGQLYVALSRTTS 204
V +PRIT K + R+QFP+RVCYA+TINKSQGQTLS+VGL L+ VF HGQLYVA+ RTTS
Sbjct: 33 VLIPRITLNTTDVKWPFTLQRRQFPVRVCYAVTINKSQGQTLSKVGLYLKKPVFTHGQLYVAVYRTTS 100
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Match:
A0A2G3AQD7_CAPCH (ATP-dependent DNA helicase n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3AQD7_CAPCH)
HSP 1 Score: 93.2 bits (230), Expect = 1.680e-20
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 1
Query: 1 VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLRSDVFCHGQLYVALSRTTSS 207
V +PR F+ +G GM R+QFPLR+ Y +T NKSQGQTL+RVG+DLRSDVF HGQLYVAL R S
Sbjct: 521 VLIPRAIFDFSIGNHGMEMRRRQFPLRLAYGLTKNKSQGQTLNRVGVDLRSDVFSHGQLYVALGRVRKS 589
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Match:
UPI000E704C93 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E704C93)
HSP 1 Score: 89.4 bits (220), Expect = 1.820e-20
Identity = 39/72 (54.17%), Postives = 57/72 (79.17%), Query Frame = 1
Query: 1 VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLRSDVFCHGQLYVALSRTTSSKNI 216
V +PRI F+ + + ++ R+QFP+R+ YA+TINKSQGQ++ VG+DL++ VFCHGQLYVALSR T+++ I
Sbjct: 115 VMLPRILFQPNISELNINMLRRQFPIRLAYAMTINKSQGQSVQHVGIDLKTPVFCHGQLYVALSRCTAARRI 186
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig100.702.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 3.86e-25 / Id = 68.06 Expect = 2.37e-24 / Id = 68.06 Expect = 3.81e-24 / Id = 68.06 Expect = 1.05e-22 / Id = 65.28 Expect = 3.54e-22 / Id = 65.28 Expect = 5.69e-21 / Id = 61.11 Expect = 1.21e-20 / Id = 61.11 Expect = 1.39e-20 / Id = 63.24 Expect = 1.68e-20 / Id = 62.32 Expect = 1.82e-20 / Id = 54.17 Sequence A0A6H5KXS1_9PHAE A0A6H5JNR7_9PHAE A0A6H5JZJ6_9PHAE A0A6H5J9C5_9PHAE A0A6H5KLU2_9PHAE A0A6H5L0V2_9PHAE UPI001ED89BAA A0A3L6EMH1_MAIZE A0A2G3AQD7_CAPCH UPI000E704C93 Pages
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig100.702.1
>prot_C-linearis_contig100.702.1 ID=prot_C-linearis_contig100.702.1|Name=mRNA_C-linearis_contig100.702.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=72bp
VKVPRITFEVKVGKQGMSFHRKQFPLRVCYAITINKSQGQTLSRVGLDLR back to top mRNA from alignment at C-linearis_contig100:444818..445033+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig100.702.1 ID=mRNA_C-linearis_contig100.702.1|Name=mRNA_C-linearis_contig100.702.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at C-linearis_contig100:444818..445033+ (Chordaria linearis ClinC8C monoicous)GTCAAAGTGCCAAGGATAACTTTTGAAGTCAAGGTCGGCAAACAAGGCAT
GTCTTTCCACCGCAAGCAGTTTCCTCTTCGTGTTTGCTACGCAATTACTA
TCAACAAGAGTCAAGGCCAGACGCTGAGTCGTGTAGGCCTTGACCTTCGT
TCCGATGTTTTCTGCCATGGCCAACTCTACGTTGCACTCAGCAGAACGAC
CTCCAGCAAAAACATT back to top Coding sequence (CDS) from alignment at C-linearis_contig100:444818..445033+
>mRNA_C-linearis_contig100.702.1 ID=mRNA_C-linearis_contig100.702.1|Name=mRNA_C-linearis_contig100.702.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at C-linearis_contig100:444818..445033+ (Chordaria linearis ClinC8C monoicous) back to top