mRNA_C-linearis_contig100.700.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig100.700.1 vs. uniprot
Match: D7FRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV9_ECTSI) HSP 1 Score: 238 bits (608), Expect = 5.530e-65 Identity = 117/259 (45.17%), Postives = 159/259 (61.39%), Query Frame = 3
Query: 1779 FQQEGCPYSISEQEAADIFNSTSEPGNVISVEKFGVGRTGNRFESLSLVLSMGYCCRSRLVYLPQEDDVLP-TESGDVFQAGQRLFSFIHATLPSDGYTQLRDDPDACSPTLELSPDDAFYLSGYPQTLLDCMNEVYVRGCERAFLGPGLDKDNICPKQDPATQTGVGNLVVHIRSGDIMTYRGGADHYGDNPADN---RGPFGQPPLQYYLNAISEKKWDTITVLTWAWEDALLNPTYTVIEMMAKTRILGENIRLFK 2543
FQ GCP ++S +A + + N I++ FG GR+GN F +S L+MG+CCRSRL+ LP+ D +P + G F+AG+R F F T P G+ QL D+P+ C P +E D+AF LL CMN VY+RGCE+A+LG +D + CPKQ+P + G G+LVVHIRSGDI NP + R FGQPPLQYYL+ + EK WD +T LT AW +NPT++++E+MAK LG+N+RL K
Sbjct: 84 FQSAGCPQALSRSQAEAALDGGNSTSNTITLLSFGSGRSGNHFLMISSYLAMGFCCRSRLLTLPEVDTAMPGDDEGGGFKAGERWFDFSRVTPPWPGFEQLGDNPEVCRPQMEDGADNAFGYEHIHSRLLRCMNRVYLRGCEKAYLGKMVDLEGFCPKQEPGKRKGAGSLVVHIRSGDIF-----------NPNEEGRRRTEFGQPPLQYYLHVLGEKDWDNVTFLTAAWNQKAINPTFSILEVMAKAGTLGDNVRLLK 331
BLAST of mRNA_C-linearis_contig100.700.1 vs. uniprot
Match: D7FRV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV8_ECTSI) HSP 1 Score: 193 bits (491), Expect = 7.770e-51 Identity = 96/203 (47.29%), Postives = 122/203 (60.10%), Query Frame = 3
Query: 1932 MGYCCRSRLVYLPQEDDVLPTESGDVFQAGQRLFSFIHATLPSDGYTQLRDDPDACSPTLELSPDDAFYLSGYPQTLLDCMNEVYVRGCERAFLGPGLDKDNICPKQDPATQTGVGNLVVHIRSGDIMTYRGGADHYGDNPADNRGPFGQPPLQYYLNAISEKKWDTITVLTWAWEDALLNPTYTVIEMMAKTRILGENIRLF 2540
MG+CCRSRL+ LP DD LP E D F + +R F F + T+P Y ++ DD + C P + AF LL+CMN VY+RGCE+A+LG +D + CPKQ+P + G G+LV HIRSGDI D R FGQPPLQYYL ++ K WD +T LT AWED LNPT+ +EMMA +LGEN+ LF
Sbjct: 1 MGFCCRSRLLTLPATDDKLPDEL-DNFTSARRWFDFSNVTVPWPEYQEMGDDQEVCRPETKDGGRKAFGYEDVHPKLLECMNRVYLRGCEKAYLGKLVDVGSFCPKQEPGKRKGAGSLVAHIRSGDIFN--------PDGEGHRRQGFGQPPLQYYLRVLAAKDWDNVTFLTAAWEDRALNPTFLTLEMMADAGVLGENVHLF 194
BLAST of mRNA_C-linearis_contig100.700.1 vs. uniprot
Match: A0A6H5L0Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z0_9PHAE) HSP 1 Score: 144 bits (363), Expect = 4.790e-33 Identity = 109/368 (29.62%), Postives = 168/368 (45.65%), Query Frame = 3
Query: 1773 LFFQQEGCPYSISEQEAADIFNSTSEPGNVISVEKF-GVGRTGNRFESLSLVLSMGYCCRSRLVYLPQEDDVLPTESGDVFQAGQRLFSF--IHATLPSD--GYTQLRDDPDACSPTLELSPDDA--FYLSGYPQTLLDCMNEVYVRGCERAFLGPGLDKDN-ICPKQDPATQT------------------------GVG-NLVVHIRSGDIMTYRGGADHYGDNPADNRGPFGQPPLQYYLNAISEKKWDTITVLTWAWEDALLNPTYTVIEMMAKTRILGENIRLFKVMD*PIFWRGGTRELANCYNIIDGNGTGTI*MLDWYLQPQSFSRVAGETCCPFVP*PVHVGR*GIELY--ECLTALQQ 2771
L FQ + CP +IS++EAA + S PG ++SV +GR+GN +E ++ V SM +CC+ ++V +P++D VLPTE+GD + +SF A L ++ GY + DP+ C P LS F G + LL CM V + GC FL + D+ C +D + G G +LVVH+RSGDI + D P +GQPPLQ+YL I + W I+VLT A NPT+ V++ + K +LG + D R++ N++ + T ++ + F + PF + + R +E+Y E T L +
Sbjct: 36 LVFQSDACPQAISKEEAAALEADESLPGGILSVGSLDAIGRSGNHYEVVTRVFSMSFCCQYKVVRMPEQDTVLPTENGDTLELRHNTYSFSSADAALRTEHLGYGDIATDPEICPPIKHLSGQKTKEFTREGVHERLLQCMLRVEMIGCVAHFLHDVVGADDAFCRWKDEGKEERRSLLRATSAVEGEDKRHAGSSPQGKGQSLVVHMRSGDIFS-----PELSDIPW-----YGQPPLQFYLKVIGSRPWSNISVLTNARIQREFNPTFGVLQELDKQGLLGAPANFYADRD----LYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGGPFFVDRICLYRPDVEVYGIEWKTTLNE 389
BLAST of mRNA_C-linearis_contig100.700.1 vs. uniprot
Match: A0A6H5K7B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B3_9PHAE) HSP 1 Score: 120 bits (302), Expect = 1.700e-24 Identity = 95/315 (30.16%), Postives = 133/315 (42.22%), Query Frame = 3
Query: 1794 CPYSI-SEQEAADIFNSTSEPGNVISVEKFGVGRTGNRFESLSLVLSMGYCCRSRLVYLPQEDDVLPTESGDVFQAGQRLFSFIHATLPSDGYTQLRDDPDACSPTLELSPDDAFYLSG--------YPQTLLDCMNEV-YVRGCERAFLGPGLDKDNICPKQDPATQT-----------------------------------------------------GVGNLVVHIRSGDIMTYRGGADHYGDNPADNRGPFGQPPLQYYLNAISEKKWDTITVLTWAWEDAL--LNPTYTVIEMMAKTRILGENIRLFK 2543
CPY+I SE+EA + +TS PGNV+ V F R GNRF S+S LS+GYCC+SRL+ LP +D+ L + G R F F A +G+ D +C P + +AF+L G Y L +C+ E+ + GCE A+ P ++CP + A + GNLVVH+RSGDI P + +GQPPLQYY+ AI +++WD + V+T D +NP +E L NI K
Sbjct: 147 CPYAIPSEEEARERSGNTSAPGNVVVVTDFNYCRLGNRFTSMSRSLSLGYCCKSRLLSLPPKDEQLAPGRFNEGIPGPRNFDFSSAP-DVEGF-----DYSSCPPEITWGGTNAFHLQGLRDEGHPYYTPELFECIKELPRIAGCEAAYFFPKDMAVDMCPLDETAERDHNNSNVRDVSEKPRDDAPGVRLDWGERGQGREATXXXXXXXXXXXXXXXXXEGSAGNLVVHVRSGDIFV----------RPHPD---YGQPPLQYYVRAIQDQEWDRVDVVTDGIVDETHAINPVVPALEAKVAEGELAGNIHFHK 442
BLAST of mRNA_C-linearis_contig100.700.1 vs. uniprot
Match: D7G610_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G610_ECTSI) HSP 1 Score: 105 bits (262), Expect = 4.090e-20 Identity = 86/273 (31.50%), Postives = 124/273 (45.42%), Query Frame = 3
Query: 1773 LFFQQEGCPYSISEQEAA--DIFNSTSEPGNVISVEKFGVGRTGNRFESLSLVLSMGYCCRSRLVYLPQEDDVLPTESGDVFQAGQRLFSFIHATLPSDGYTQLRDDPDACSPTLELSPDDAFYLSG--------YPQTLLDCMNEV-YVRGCERAFLGPGLDKDNICPKQ--------DPATQTGVGNLVVHIRSGDIMTYRGGADHYGDNPADNRGPF-GQPPLQYYLNAISEKKWDTITVLTWAWEDALLNPTYTVIEMMAKTRILGENI 2531
+ F + C Y+I + A +ST E GNV+ V GRTGNRF ++ L++GYCC+++ V+LP +DDVL + G R F F A DG D C + A ++G Y + DCM + + GCE A+ P +CP++ D G GNLV+H+RSGDI D P+ GQPPLQ+YL + ++ WD I V+T +NP + M T L +N+
Sbjct: 52 IAFNKHDCTYAIPNAKVARKQRHDSTIE-GNVVKVTHLQFGRTGNRFMAVYRNLALGYCCKAKQVWLPPKDDVLAPGIFNEGTPGPRWFDFSSAP-DVDGV-----DLGRCPIDIIWENRGAMQMAGLDNPERNKYLPHIRDCMAKAPRLLGCEAAYYFP--QDIAVCPRKKKPFLALGDRNPPGGAGNLVLHVRSGDIFF-------------DRVVPYKGQPPLQFYLLLMQDQPWDRIDVVTNGQNWDNVNPVVPALMAMRATGALPDNV 302
BLAST of mRNA_C-linearis_contig100.700.1 vs. uniprot
Match: D7G1L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L4_ECTSI) HSP 1 Score: 100 bits (249), Expect = 6.030e-18 Identity = 92/314 (29.30%), Postives = 131/314 (41.72%), Query Frame = 3
Query: 1794 CPYSI-SEQEAADIFN------STSEPGNVISVEKFGVGRTGNRFESLSLVLSMGYCCRSRLVYLPQEDDVLPTESGDVFQAGQRLFSFIHATLPSDGYTQLRDDPDACSPTLELSPDDAFYLSG--------YPQTLLDCMNEV-YVRGCERAFLGPGLDKDNICPKQDPAT-------------------------QTG---------------------VGNLVVHIRSGDIMTYRGGADHYGDNPADNRGPFGQPPLQYYLNAISEKKWDTITVLTWAWEDA--LLNPTYTVIEMMAKTRILGENIRLFK 2543
CPY+I +E+E + + +TS PGNV+ V F R GNRF S+ LS+GYCC+SRLV LP +DD L + G R F F A +G+ D +C P ++ AF+L G Y L C+ E+ ++ GCE A+ P +CP + A ++G GNLV+H+RSGDI +PA +GQ YY+ AI +++WD + V+T ED +NP +E L NI K
Sbjct: 146 CPYAILAEEEGHERSDRGGDGGNTSAPGNVVVVTDFNYCRLGNRFLSMGRSLSLGYCCKSRLVSLPPKDDQLAPGRFNDGTPGPRNFDFSSAP-DVEGF-----DSSSCPPEIKWGGTQAFHLEGLRDEGHPYYTPGLFTCIKELPWIIGCEAAYFFPTDMAVPMCPLDETAEGGNKNVRDISEKPKDDAPGIQLDWEESGHGREATEQXXXXXXXXXXXGSAGNLVMHVRSGDIFV----------SPA--HPGYGQ----YYVQAIQDQQWDRVDVVTNGIEDKNHAINPIVPALEAKVAKGQLPGNIHFHK 437
BLAST of mRNA_C-linearis_contig100.700.1 vs. uniprot
Match: A0A6H5K2F3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2F3_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 6.050e-10 Identity = 46/118 (38.98%), Postives = 62/118 (52.54%), Query Frame = 3
Query: 1791 GCPYSI-SEQEAADIFNSTSEPGNVISVEKFGVGRTGNRFESLSLVLSMGYCCRSRLVYLPQEDDVLPTESGDVFQAGQRLFSFIHATLPSDGYTQLRDDPDACSPTLELSPDDAFYL 2141
GCPY I + +EA S PGNV+ VE RTGN F S L++GYCC+S++V+LP +DDVL + G R F F A DG+ D ACS + + AF++
Sbjct: 93 GCPYVIDTAEEAISRIKDKSLPGNVVKVEHLTFCRTGNHFSSFFRNLALGYCCKSKVVWLPPKDDVLAPGVFNQGTPGPRWFDFSSAP-DVDGF-----DSSACSADITWAGQRAFHM 204
BLAST of mRNA_C-linearis_contig100.700.1 vs. uniprot
Match: D8LSV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSV8_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 3.680e-8 Identity = 37/108 (34.26%), Postives = 55/108 (50.93%), Query Frame = 3
Query: 1932 MGYCCRSRLVYLPQEDDVLPTESGDVFQAGQRLFSF--IHATLPSD--GYTQLRDDPDACSPTLELSPDDA--FYLSGYPQTLLDCMNEVYVRGCERAFLGPGLDKDN 2237
M +CC+ ++V +P++D VLPTE+GD + +SF A L ++ GY + DP+ C P LS F G + LL CM V + GC FL + D+
Sbjct: 1 MSFCCQYKVVTMPEQDTVLPTENGDTLELRHNTYSFSSADAALRTEHLGYGDISTDPEICPPIKHLSGQKTKEFTREGVHERLLQCMLRVEMIGCVAHFLHDVVGADD 108 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig100.700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig100.700.1 >prot_C-linearis_contig100.700.1 ID=prot_C-linearis_contig100.700.1|Name=mRNA_C-linearis_contig100.700.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=394bp MQYHRKYLLRSSINVSHPVRPSDANRAASTKYTDWRSALVPSPTVSPFFDback to top mRNA from alignment at C-linearis_contig100:366018..373528+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig100.700.1 ID=mRNA_C-linearis_contig100.700.1|Name=mRNA_C-linearis_contig100.700.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7511bp|location=Sequence derived from alignment at C-linearis_contig100:366018..373528+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig100:366018..373528+ >mRNA_C-linearis_contig100.700.1 ID=mRNA_C-linearis_contig100.700.1|Name=mRNA_C-linearis_contig100.700.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2364bp|location=Sequence derived from alignment at C-linearis_contig100:366018..373528+ (Chordaria linearis ClinC8C monoicous)back to top |