mRNA_C-linearis_contig100.695.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig100.695.1
Unique NamemRNA_C-linearis_contig100.695.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Match: A0A6H5L3W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W5_9PHAE)

HSP 1 Score: 402 bits (1032), Expect = 1.780e-133
Identity = 204/322 (63.35%), Postives = 242/322 (75.16%), Query Frame = 2
Query:    2 GAGSGGADDAPPLRKIADLWKSEFLLISTHLREVLRVAIG------STSRSVGLAAMTLPGFVSDDILLKSQPEEGTGDNMEEGAGDTTPTRVLRDLGAAVELYHQTKVEYITGLL-QPADQDAFRRAHRLVQAGVGFGVAEHSVKALQIALSSESLGGEVGEDGKLSGYGISFNFRRDRQLDAFGHFYDKKRVGLWLAPDGPHEGNHQGSCQDRFAGLSRCPQITGTNCNTHEQNYAKKSKFLPSVSGVGFDTFTFNITLINELENVDINRKTCNLAVASATRHSHARLLACRKEVWTMGRCFCEEPLMRSFDNVGKLRIT 946
            G G  G D+ PPLR+I++L +SE   I+++L+ VLRVA+G      +TS S+GL     P F++DD+L     E G  D+  E A DT PT VLRDL   VELYH+ K  YIT LL    D DA  RA+RL+++GVGFGVAEHSVKALQIALSS+ +GG VGEDGKL GY I FNF+R    D +GHFY  KRVGLWL PDGPHEGNHQGSCQ +F GL+RC QITGTNCN HEQN++KK KFLPSV+G+GFDTFTFN+TLINELENV INRKTC LAV+SA+ H   RL ACRKEVW+ GRCFC +PLMRSFD +GKL I+
Sbjct:  248 GEGGRGGDNTPPLREISELSRSELATITSYLKGVLRVAVGLAEATEATSLSLGL-----PEFLTDDVLYIEVAEGGAEDDTGEEADDTGPTPVLRDLEGIVELYHERKARYITRLLGAEPDGDASERAYRLIRSGVGFGVAEHSVKALQIALSSDCVGGGVGEDGKLPGYSIDFNFKRTPSYDNYGHFYGGKRVGLWLGPDGPHEGNHQGSCQAKFGGLTRCRQITGTNCNPHEQNHSKKIKFLPSVTGMGFDTFTFNVTLINELENVKINRKTCTLAVSSASGHPRHRLPACRKEVWSCGRCFCSKPLMRSFDKLGKLCIS 564          
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Match: A0A6H5JKI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI4_9PHAE)

HSP 1 Score: 382 bits (982), Expect = 7.760e-124
Identity = 198/321 (61.68%), Postives = 233/321 (72.59%), Query Frame = 2
Query:    2 GAGSGGADDAPPLRKIADLWKSEFLLISTHLREVLRVAIGSTSRSVGLAAMTLPGFVSDDILLKSQPEEGT----GDNMEEGAGDTTPTRVLRDLGAAVELYHQTKVEYITGLLQPADQDAFRRAHRLVQAGVGFGVAEHSVKALQIALSSESL---GGEVGEDGKLSGYGISFNFRRDRQLDAFGHFYDKKRVGLWLAPDGPHEGNHQGSCQDRFAGLSRCPQITGTNCNTHEQNYAKKSKFLPSVSGVGFDTFTFNITLINELENVDINRKTCNLAVASATRHSHARLLACRKEVWTMGRCFCEEPLMRSFDNVGKLRI 943
            G   GGAD+ PP R+IADL   E + IS HL E LRVAIGST  + G   M +P F+ DD+L  SQ  EG      D++EEG G+  P  VLR L   V LYHQ KV + T LL   D D+  RA+RLVQAGVGFGVAEHSV ALQ+ALSS+SL   GGE+ +DGKL GYG+SFNF+R+R    FGH YD +RVG+WL PDGPHEGNHQG CQ ++ G+SRCPQ TG NCN HEQN++KK+K LPSVSG+GFDTFTFNI LINELENV INRKT  +AV+SAT   + RL ACRKEVWT GRCFC +PLMRSFD     ++
Sbjct:  227 GERGGGADEIPPEREIADLSTKELIDISGHLMETLRVAIGSTD-AAGWTMMCMPEFLGDDVLYYSQSMEGVIGGAVDDIEEGVGEAAP--VLRKLEDTVNLYHQKKVTFTTDLLAAVDNDSSERAYRLVQAGVGFGVAEHSVTALQMALSSDSLTIWGGELDKDGKLPGYGVSFNFKRERSFGEFGHCYDGQRVGVWLGPDGPHEGNHQGHCQMKYGGVSRCPQPTGVNCNAHEQNHSKKTKRLPSVSGMGFDTFTFNIILINELENVKINRKTWIVAVSSATELLYERLHACRKEVWTCGRCFCSKPLMRSFDQFDLFQM 544          
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Match: A0A6H5K302_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K302_9PHAE)

HSP 1 Score: 331 bits (849), Expect = 6.130e-111
Identity = 168/222 (75.68%), Postives = 178/222 (80.18%), Query Frame = 2
Query:  305 KVEYITGLLQPADQDAFRRAHRLVQAGVGFGVAEHSVKALQIALSSESLGGEVGEDGKLSGYGISFNFRRDRQLDAFGHFYDKKRVGLWLAPDGPHEGNHQGSCQDRFAGLSRCPQITGTNCNTHEQNYAKKSKFLPSVSGVGFDTFTFNITLINELENVDINRKTCNLAVASATRHSHARLLACRKEVWTMGRCFCEEPLMRSFDNVGKLRITRA*PRDGM 970
            +VEYI  LLQPADQ A  RA   V          HS      A    S GG VGEDGKLSGY ISFNFRR R+  +FGHFYD KRVGLWLAPDGPHEGNHQGSCQD FAGLS CPQI+GTNCNTHEQN+AKKSKFLPSVSG+GFDTFTFNITLINELENV+INRKTCNLAVASAT+H H RL ACRKEVWT GRCFCE PLMRSFDN+GKLRITRA  +DGM
Sbjct:    2 QVEYIASLLQPADQHASERACESVG---------HS------AFWRLSRGG-VGEDGKLSGYDISFNFRRGREFSSFGHFYDNKRVGLWLAPDGPHEGNHQGSCQDMFAGLSSCPQISGTNCNTHEQNHAKKSKFLPSVSGMGFDTFTFNITLINELENVEINRKTCNLAVASATQHPHVRLHACRKEVWTYGRCFCENPLMRSFDNLGKLRITRASLQDGM 207          
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Match: A0A6H5KLN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLN2_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 1.520e-96
Identity = 167/336 (49.70%), Postives = 196/336 (58.33%), Query Frame = 2
Query:    2 GAGSGGADDAPPLRKIADLWKSEFLLISTHLREVLRVAIGSTSRSVGLAAMTLPGFVSDDILLKSQ-----------------------------------PEEGTGDNMEEGAGDTTPTRVLRDLGAAVELYHQTKVEYITGLLQPADQDAFRRAHRLVQAGVGFGVAEHSVKALQIALSSESLGGEVGEDGKLSGYGISFNFRRDRQLDAFGHFYDKKRVGLWLAPDGPHEGNHQGSCQDRFAGLSRCPQITGTNCNTHEQNYAKKSKFLPSVSGVGFDTFTFNITLINELENVDINRKTCNLAVASATRHSHARLLACRKEVWTMGRCFCEEP 904
            G   GGAD+ PP R+IADL   E L IS HL E LRVAIGST  + GL  M +P F+ DD+L   Q                                   P  G  D +EEG G+  P  VLR L  AV LYHQ                                          +ALSS+SLGG++ ++GKL GYG+SFN +R+R    FGHFYD +RVGLWL PDGP EGNHQG CQ ++ G+SRCPQ+TG NCN HEQN+ KK+K LPSVSG+GFDTFTFNITLINELENV INRKTC++AV+SA  H H RL ACR+EVWT GRCFC EP
Sbjct:  203 GERGGGADETPPEREIADLSTKELLDISGHLIETLRVAIGSTD-AAGLTMMCMPEFLGDDVLYVLQSINGRSYRRSGRWHRGRCRRGCSGFEKIGGRRQPLPPGGAVDGIEEGVGEAAP--VLRKLEDAVNLYHQ------------------------------------------MALSSDSLGGQLDKNGKLPGYGVSFNLKRERSFGEFGHFYDGQRVGLWLGPDGPLEGNHQGPCQMKYGGVSRCPQLTGVNCNVHEQNHEKKTKHLPSVSGMGFDTFTFNITLINELENVKINRKTCSVAVSSAIEHPHERLYACRQEVWTCGRCFCSEP 493          
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Match: A0A6H5K5W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W4_9PHAE)

HSP 1 Score: 296 bits (758), Expect = 1.080e-91
Identity = 149/270 (55.19%), Postives = 185/270 (68.52%), Query Frame = 2
Query:   32 PPLRKIADLWKSEFLLISTHLREVLRVAIGSTSRSVGLAAMTLPGFVSDDILLKSQPEEGTGDNMEEGAGDTTPTRVLRDLGAAVELYHQTKVEYITGLLQPADQDAFRRAHRLVQAGVGFGVAEHSVKALQIALSSESLGGEVGEDGKLSGYGISFNFRRDRQLDAFGHFYDKKRVGLWLAPDGPHEGNHQGSCQDRFAGLSRCPQITGTNCNTHEQNYAKKSKFLPSVSGVGFDTFTFNITLINELENVDINRKTCNLAVASATRHSH 841
            PP   I DL ++E  +I+ HL E+LRVA GS   + GLA + +P FV +   L S  E                   LR L   ++ YH TKV YIT LL   D     RA R ++AGVGFG AEHSVKALQ+ALSS+SLGG + + G+L GYGISF+F+R R    +GHFYD KRVGLWLAPDGPHEGNHQG CQ++F GL+RCPQ+TG NCN HEQN++K  K LPSV+G+GFDTF FN+ LINE E+  INRKTC+LAV+SAT+ ++
Sbjct:  352 PPESAITDLSRAELGMIAAHLMEILRVAAGSPPPARGLADVEVPSFVLEKYFLYSHAE------------------TLRPLEDVIDNYHNTKVSYITHLLGAKDDIRRERASRFIRAGVGFGEAEHSVKALQMALSSDSLGGGLDDHGRLPGYGISFHFQRFRSFGDYGHFYDGKRVGLWLAPDGPHEGNHQGKCQEKFGGLARCPQLTGVNCNAHEQNHSKNKKHLPSVNGMGFDTFNFNVNLINESEHRGINRKTCDLAVSSATQQAY 603          
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Match: A0A6H5JIR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR9_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 4.180e-91
Identity = 126/173 (72.83%), Postives = 145/173 (83.82%), Query Frame = 2
Query:  428 IALSSESLGGEVGEDGKLSGYGISFNFRRDRQLDAFGHFYDKKRVGLWLAPDGPHEGNHQGSCQDRFAGLSRCPQITGTNCNTHEQNYAKKSKFLPSVSGVGFDTFTFNITLINELENVDINRKTCNLAVASATRHSHARLLACRKEVWTMGRCFCEEPLMRSFDNVGKLRIT 946
            +ALSS+SLGG+  +DGKL GYG+SFNF+R+R    FGHFYD +RVGLWL PDGPHEGNHQG CQ +  G+ RCPQ+TG NCN HEQN+ KK+K LPSVSG+GFDTFT+NITLINELENV INRKTC++AV+SA  H H RL ACRKEVWT GRCFC +PLMRSFD  GKLRIT
Sbjct:    1 MALSSDSLGGQFDKDGKLPGYGVSFNFKRERSFGEFGHFYDGQRVGLWLGPDGPHEGNHQGPCQMKDGGVFRCPQLTGVNCNVHEQNHEKKTKHLPSVSGMGFDTFTYNITLINELENVKINRKTCSVAVSSAIEHPHERLHACRKEVWTCGRCFCSKPLMRSFDQFGKLRIT 173          
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Match: A0A6H5JV99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV99_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 4.070e-78
Identity = 112/157 (71.34%), Postives = 130/157 (82.80%), Query Frame = 2
Query:  476 KLSGYGISFNFRRDRQLDAFGHFYDKKRVGLWLAPDGPHEGNHQGSCQDRFAGLSRCPQITGTNCNTHEQNYAKKSKFLPSVSGVGFDTFTFNITLINELENVDINRKTCNLAVASATRHSHARLLACRKEVWTMGRCFCEEPLMRSFDNVGKLRIT 946
            KL GYG+SFNF+R+R    FGHFYD +RVGLWL PDGPHEGNHQG CQ ++ G SRCPQ+TG NCN HEQ ++KK + LPS S +GFDTFTFNITLIN+LENV INRKTC++AV+SAT H H RL ACRKEVWT GRCFC +PL+RSFD  G+LRIT
Sbjct:  199 KLPGYGVSFNFKRERSFGKFGHFYDGQRVGLWLGPDGPHEGNHQGPCQMKYGGESRCPQLTGVNCNVHEQKHSKKPRHLPSGSVMGFDTFTFNITLINDLENVKINRKTCSVAVSSATEHPHERLHACRKEVWTCGRCFCSKPLIRSFDQFGELRIT 355          
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Match: A0A6H5JBW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW4_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 3.480e-68
Identity = 101/135 (74.81%), Postives = 117/135 (86.67%), Query Frame = 2
Query:  380 AGVGFGVAEHSVKALQIALSSESLGGEVGEDGKLSGYGISFNFRRDRQLDAFGHFYDKKRVGLWLAPDGPHEGNHQGSCQDRFAGLSRCPQITGTNCNTHEQNYAKKSKFLPSVSGVGFDTFTFNITLINELENV 784
            A VGFGVAEHSVKALQ ALSS+SLGG++ +DG+L GYG+S NF R+R    FGHFYD +RVGLWL PDGPHEGNHQGSCQ ++ G+SRCPQ+TG NCN HEQN++KK+K LPSVSG+GFDTFT NITLINELENV
Sbjct:   18 AWVGFGVAEHSVKALQRALSSDSLGGQLDKDGQLPGYGVSLNFNRERSFGEFGHFYDGQRVGLWLGPDGPHEGNHQGSCQMKYGGVSRCPQLTGVNCNVHEQNHSKKTKHLPSVSGMGFDTFTLNITLINELENV 152          
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Match: A0A6H5KBD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD1_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 1.040e-66
Identity = 120/198 (60.61%), Postives = 142/198 (71.72%), Query Frame = 2
Query:   23 DDAPPLRKIADLWKSEFLLISTHLREVLRVAIGSTSRSVGLAAMTLPGFVSDDILLKSQPEEG-TG---DNMEEGAGDTTPTRVLRDLGAAVELYHQTKVEYITGLLQPADQDAFRRAHRLVQAGVGFGVAEHSVKALQIALSSESLGGEVGEDGKLSGYGISFNFRRDRQLDAFGHFYDKKRVGLWLAPDGPHEGNH 604
            D+ PP R+IAD+   E L IS HL E LRVAIGST  + GL  M +P F+ DD+L  SQ  EG TG   D++EEG G+  P  VLR L  AV+L+HQ KV +IT  L   D D   RA RLVQA VGFGVAEHSVKAL +ALSS+SLGGE+ +DGKL G+G+SFNF+R+R    FGHFYD +RVGLWL PDGPHEGNH
Sbjct:  165 DETPPEREIADVSTKELLDISGHLMETLRVAIGSTD-AAGLTMMCMPEFLGDDVLYYSQSMEGVTGGAVDDIEEGVGEAAP--VLRKLEDAVDLFHQKKVTFITDSLDAVDHDTSERACRLVQARVGFGVAEHSVKALHMALSSDSLGGELDKDGKLPGHGVSFNFKRERSFGEFGHFYDGQRVGLWLGPDGPHEGNH 359          
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Match: A0A6H5K6F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6F2_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 1.630e-52
Identity = 81/108 (75.00%), Postives = 94/108 (87.04%), Query Frame = 2
Query:  623 RFAGLSRCPQITGTNCNTHEQNYAKKSKFLPSVSGVGFDTFTFNITLINELENVDINRKTCNLAVASATRHSHARLLACRKEVWTMGRCFCEEPLMRSFDNVGKLRIT 946
            ++ G+SRCPQ+TG NCN HEQN++KK++ LPSVSG+GFDTFTFNITLINELENV INRKTC++AV+SAT H H RL ACRKEV T GRCFC +PLMRSFD  GKLRIT
Sbjct:    2 KYGGVSRCPQLTGVNCNVHEQNHSKKTEHLPSVSGMGFDTFTFNITLINELENVKINRKTCSVAVSSATEHPHERLHACRKEVSTCGRCFCSKPLMRSFDQFGKLRIT 109          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5L3W5_9PHAE1.780e-13363.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKI4_9PHAE7.760e-12461.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K302_9PHAE6.130e-11175.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLN2_9PHAE1.520e-9649.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5W4_9PHAE1.080e-9155.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIR9_9PHAE4.180e-9172.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV99_9PHAE4.070e-7871.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBW4_9PHAE3.480e-6874.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBD1_9PHAE1.040e-6660.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6F2_9PHAE1.630e-5275.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig100contigC-linearis_contig100:336798..338485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1108
Cds size804
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig100.695.1prot_C-linearis_contig100.695.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig100 336951..338334 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927357.497073-UTR-C-linearis_contig100:336797..3369501622927357.497073-UTR-C-linearis_contig100:336797..336950Chordaria linearis ClinC8C monoicousUTRC-linearis_contig100 336798..336950 -
1690879650.3151774-UTR-C-linearis_contig100:336797..3369501690879650.3151774-UTR-C-linearis_contig100:336797..336950Chordaria linearis ClinC8C monoicousUTRC-linearis_contig100 336798..336950 -
1622927357.5528142-UTR-C-linearis_contig100:338334..3384851622927357.5528142-UTR-C-linearis_contig100:338334..338485Chordaria linearis ClinC8C monoicousUTRC-linearis_contig100 338335..338485 -
1690879650.3652475-UTR-C-linearis_contig100:338334..3384851690879650.3652475-UTR-C-linearis_contig100:338334..338485Chordaria linearis ClinC8C monoicousUTRC-linearis_contig100 338335..338485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927357.5121996-CDS-C-linearis_contig100:336950..3375401622927357.5121996-CDS-C-linearis_contig100:336950..337540Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 336951..337540 -
1690879650.3300357-CDS-C-linearis_contig100:336950..3375401690879650.3300357-CDS-C-linearis_contig100:336950..337540Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 336951..337540 -
1622927357.5265555-CDS-C-linearis_contig100:337858..3379221622927357.5265555-CDS-C-linearis_contig100:337858..337922Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 337859..337922 -
1690879650.3428183-CDS-C-linearis_contig100:337858..3379221690879650.3428183-CDS-C-linearis_contig100:337858..337922Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 337859..337922 -
1622927357.5378692-CDS-C-linearis_contig100:338184..3383341622927357.5378692-CDS-C-linearis_contig100:338184..338334Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 338185..338334 -
1690879650.3549933-CDS-C-linearis_contig100:338184..3383341690879650.3549933-CDS-C-linearis_contig100:338184..338334Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 338185..338334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig100.695.1

>prot_C-linearis_contig100.695.1 ID=prot_C-linearis_contig100.695.1|Name=mRNA_C-linearis_contig100.695.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=268bp
MTLPGFVSDDILLKSQPEEGTGDNMEEGAGDTTPTRVLRDLGAAVELYHQ
TKVEYITGLLQPADQDAFRRAHRLVQAGVGFGVAEHSVKALQIALSSESL
GGEVGEDGKLSGYGISFNFRRDRQLDAFGHFYDKKRVGLWLAPDGPHEGN
HQGSCQDRFAGLSRCPQITGTNCNTHEQNYAKKSKFLPSVSGVGFDTFTF
NITLINELENVDINRKTCNLAVASATRHSHARLLACRKEVWTMGRCFCEE
PLMRSFDNVGKLRITRA*
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mRNA from alignment at C-linearis_contig100:336798..338485-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig100.695.1 ID=mRNA_C-linearis_contig100.695.1|Name=mRNA_C-linearis_contig100.695.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1688bp|location=Sequence derived from alignment at C-linearis_contig100:336798..338485- (Chordaria linearis ClinC8C monoicous)
GGGGGCCGGCAGCGGTGGGGCAGACGACGCCCCACCACTGCGCAAGATAG CCGACTTGTGGAAATCGGAGTTCCTCCTGATTTCCACGCATCTCAGGGAA GTTCTGAGGGTAGCGATAGGGTCAACTAGTAGAAGCGTCGGCTTGGCGGC GATGACGTTGCCTGGTTTCGTTTCAGACGACATTCTCTTGAAAAGTCAAC CAGAGGAAGGGACTGGAGACAACATGGAGGAAGGTGCTGGCGACACTACT CCCACCCGGGTTTTGAGAGACCTTGGGGCCGCCGTCGAGCTCTATCACCA GGTGAGATGTTGGTCCTTGAGTTTTTTTTAGGTCCATTCCAGATTTCATG GTGGGTGAGGTTCCTACCGTACCTTGGTTGACGAAGTACGGGTGTCTACG GTGATAGCCGGAACAGGTGACCGCCATTTTCGCCGGACTCTAGTCTCGGG ATAGCCTTATGTCATGGTGACAAGTGTATTCTTCGATCTCGTCCCTGGTG CTCACAGCGTTCATCGCACTCTTTTTGGCCGCCCGTTGTGTCTTGTCCGT CTCACTTTTCTAGACGAAGGTGGAGTACATCACCGGCCTCCTCCAGCCCG CAGACCAAGACGCATTCCGCCGCGCACGTGAGAATATTAGCCGAAAGCTC TTCTTTTATTGTCTGTTGCACGTGTGTATTCAATGGGTCGTTTCGTAGAG TGCTCGCGGCGCCAAGGGCCTCTTGTGTAGTGTATGCTTTTTGTGTCGCC CGGTCCTGCCTTTCGTGCACCCCAAACACTCCGGCCGCTCCTATACCGCC CGCTCCCGTCATGCTCTTTGGAAAGTCAATACACATCCTCTAACCCTCGA TAAAAAACAAGTATCTCTATGTATATCTCAGCACATGCTCAGCGAAACCC TGTTCTTTCCCCGTGTTTTTCGCTGTCCTATCCTACCTGGAACAGATCGC TTAGTCCAAGCAGGGGTCGGTTTTGGCGTGGCCGAACACTCCGTGAAGGC ATTACAGATTGCGCTTTCAAGCGAGTCTCTGGGGGGGGAGGTGGGCGAAG ATGGGAAGCTTTCTGGCTACGGCATCTCCTTCAACTTCAGACGGGATCGA CAGTTGGATGCTTTCGGCCACTTCTACGACAAGAAGAGAGTGGGTCTTTG GCTCGCACCGGACGGGCCGCACGAGGGCAACCACCAAGGGTCTTGCCAAG ATCGGTTTGCCGGTCTTTCCCGGTGCCCACAAATCACGGGTACCAACTGC AACACTCATGAGCAGAACTACGCGAAGAAGAGCAAGTTCCTACCTAGTGT TAGCGGCGTGGGGTTCGACACATTCACCTTCAACATTACTTTGATCAACG AGTTGGAAAATGTTGACATCAATCGCAAGACGTGCAACCTCGCCGTAGCA AGTGCCACACGACACTCCCACGCCAGATTGCTTGCTTGTCGTAAAGAGGT GTGGACTATGGGGCGATGCTTCTGCGAAGAGCCTCTTATGAGGTCGTTCG ACAACGTTGGTAAATTGCGCATTACACGCGCTTAGCCGCGGGACGGGATG TAAGCTGGGGTGGGTACATGTTGTAGTGTTCCTGAGGGTTTGCTTTGTGC TTTCTGTCTGTCTTGCCTACTCTGCACGCAGAGCCCTTCCCATAGCCATG TTGAAGTCCAAAAAAAAGAAGAGAGCAGAAAGATGCAG
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Coding sequence (CDS) from alignment at C-linearis_contig100:336798..338485-

>mRNA_C-linearis_contig100.695.1 ID=mRNA_C-linearis_contig100.695.1|Name=mRNA_C-linearis_contig100.695.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1608bp|location=Sequence derived from alignment at C-linearis_contig100:336798..338485- (Chordaria linearis ClinC8C monoicous)
ATGACGTTGCCTGGTTTCGTTTCAGACGACATTCTCTTGAAAAGTCAACC
AGAGGAAGGGACTGGAGACAACATGGAGGAAGGTGCTGGCGACACTACTC
CCACCCGGGTTTTGAGAGACCTTGGGGCCGCCGTCGAGCTCTATCACCAG
ATGACGTTGCCTGGTTTCGTTTCAGACGACATTCTCTTGAAAAGTCAACC
AGAGGAAGGGACTGGAGACAACATGGAGGAAGGTGCTGGCGACACTACTC
CCACCCGGGTTTTGAGAGACCTTGGGGCCGCCGTCGAGCTCTATCACCAG
ACGAAGGTGGAGTACATCACCGGCCTCCTCCAGCCCGCAGACCAAGACGC
ATTCCGCCGCGCACACGAAGGTGGAGTACATCACCGGCCTCCTCCAGCCC
GCAGACCAAGACGCATTCCGCCGCGCACATCGCTTAGTCCAAGCAGGGGT
CGGTTTTGGCGTGGCCGAACACTCCGTGAAGGCATTACAGATTGCGCTTT
CAAGCGAGTCTCTGGGGGGGGAGGTGGGCGAAGATGGGAAGCTTTCTGGC
TACGGCATCTCCTTCAACTTCAGACGGGATCGACAGTTGGATGCTTTCGG
CCACTTCTACGACAAGAAGAGAGTGGGTCTTTGGCTCGCACCGGACGGGC
CGCACGAGGGCAACCACCAAGGGTCTTGCCAAGATCGGTTTGCCGGTCTT
TCCCGGTGCCCACAAATCACGGGTACCAACTGCAACACTCATGAGCAGAA
CTACGCGAAGAAGAGCAAGTTCCTACCTAGTGTTAGCGGCGTGGGGTTCG
ACACATTCACCTTCAACATTACTTTGATCAACGAGTTGGAAAATGTTGAC
ATCAATCGCAAGACGTGCAACCTCGCCGTAGCAAGTGCCACACGACACTC
CCACGCCAGATTGCTTGCTTGTCGTAAAGAGGTGTGGACTATGGGGCGAT
GCTTCTGCGAAGAGCCTCTTATGAGGTCGTTCGACAACGTTGGTAAATTG
CGCATTACACGCGCTTAGATCGCTTAGTCCAAGCAGGGGTCGGTTTTGGC
GTGGCCGAACACTCCGTGAAGGCATTACAGATTGCGCTTTCAAGCGAGTC
TCTGGGGGGGGAGGTGGGCGAAGATGGGAAGCTTTCTGGCTACGGCATCT
CCTTCAACTTCAGACGGGATCGACAGTTGGATGCTTTCGGCCACTTCTAC
GACAAGAAGAGAGTGGGTCTTTGGCTCGCACCGGACGGGCCGCACGAGGG
CAACCACCAAGGGTCTTGCCAAGATCGGTTTGCCGGTCTTTCCCGGTGCC
CACAAATCACGGGTACCAACTGCAACACTCATGAGCAGAACTACGCGAAG
AAGAGCAAGTTCCTACCTAGTGTTAGCGGCGTGGGGTTCGACACATTCAC
CTTCAACATTACTTTGATCAACGAGTTGGAAAATGTTGACATCAATCGCA
AGACGTGCAACCTCGCCGTAGCAAGTGCCACACGACACTCCCACGCCAGA
TTGCTTGCTTGTCGTAAAGAGGTGTGGACTATGGGGCGATGCTTCTGCGA
AGAGCCTCTTATGAGGTCGTTCGACAACGTTGGTAAATTGCGCATTACAC
GCGCTTAG
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