mRNA_C-linearis_contig100.687.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig100.687.1
Unique NamemRNA_C-linearis_contig100.687.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Match: A0A6H5JNE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE6_9PHAE)

HSP 1 Score: 478 bits (1229), Expect = 1.770e-161
Identity = 277/436 (63.53%), Postives = 320/436 (73.39%), Query Frame = 1 
Query:   22 MSWCLMIAVLLSGPAVTPCGGT--VYGGSARPSYGMRSPGEDSGSGAIRRDSAAPGAFAIASGDHGGGAEALRRFASTRAMKTGTTIAGVVFEGGVVLGADTRATQGKTVCDRNCDKIHILAANIACCGAGTTADAVRITEGARLALLRMAGEMQACLPSSRFPLTRNQASNGDSGSEGDSNSSDVPLATRDSVLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQ---IHEGGSFAEVDFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSNIDVCVITHKRGLEHHRGAWRDPGVGDDAGAGRQLAQVLGTTGMGCAQHAATFPRKMEAAHQRQQQQQEGQRFDANVDVVEVVEVGGEDGSRAWVGDVRRRTREKSVMKVDHRDGGALRSFRSSALDDKVELL 1314
            MSWCL+I +LL  P + PCGG+  V+   A P+                 + A  G    +     GGAEALRRFASTRAMKTGTTIAGVVFEGGVVLGADTRAT GKTVCDRNCDKIHILA+NIACCGAGT+ADAVRITEGARLALLRMA EMQACLPSSR PL ++Q     S ++G+      PLA+ DS LD VQR++LRV AAA LL+RHLFRYQGTVSAALVLGGVD IGEH+YQ   IHEGGS AEV+FTAMGSGSLAALSVLERG+REN++E+EAKELVL+ IAAGIDNDLGSGSNID+CVIT +RGLEHHRGAW DPG+ DD  A R+L + +           +  P +++A+   +             DV+    VGGE GS AWVG+VRRR REKSVMKVDH D GALR +R SALDDK+E+L
Sbjct:    1 MSWCLLIVLLLGAPFLPPCGGSLHVFYSGATPTGSA--------------EGATAGLLGASDRSMEGGAEALRRFASTRAMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAREMQACLPSSRSPLLQSQ-----SRADGER-----PLASCDSGLDEVQRKHLRVGAAALLLERHLFRYQGTVSAALVLGGVDVIGEHIYQAPLIHEGGSLAEVEFTAMGSGSLAALSVLERGYRENMTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHRGAWTDPGLDDDGIAARELPEGI----------ESWQPNQLDASDDTES---------GGFDVI----VGGEGGSGAWVGNVRRRNREKSVMKVDHDDDGALRRYRCSALDDKIEVL 389
[Close]
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Match: D7FTB7_ECTSI (Proteasome subunit beta 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB7_ECTSI)

HSP 1 Score: 380 bits (975), Expect = 3.310e-124
Identity = 211/280 (75.36%), Postives = 230/280 (82.14%), Query Frame = 1 
Query:  256 MKTGTTIAGVVFEGGVVLGADTRATQGKTVCDRNCDKIHILAANIACCGAGTTADAVRITEGARLALLRMAGEMQACLPSSRFPLTRNQASNGDSGSEGDSNSSDVPLATRDSVLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQIHEGGSFAEVDFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSNIDVCVITHKRGLEHHRGAWRDPGVGDDAGAGRQLAQVLGTTG------MGCAQHAATFP 1077
            MKTGTTIAGVVFEGGVVLGADTRAT GKTVCDRNCDKIHILA+NIACCGAGT+ADAVRITEGARLALLRMA EMQACLPSSR PL + Q       S  D    +  LA+ DS LD VQR++LRV AAA LLKRHLFRYQGTVSAALVLGGVD IGEH+YQIHEGGS AEV+FTAMGSGSLAALSVLERG+RENL+E+EAKELVL+ IAAGIDNDLGSGSNID+CVIT +RGLEHHRGAW DPG+ DD  A R+L +  G+ G      MG  QH    P
Sbjct:    1 MKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAREMQACLPSSRSPLLQCQ-------SRADE---ERALASCDSGLDEVQRKHLRVGAAALLLKRHLFRYQGTVSAALVLGGVDVIGEHIYQIHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHRGAWTDPGLDDDDIAARELPE--GSRGSENDNKMGQVQHTDARP 268
[Close]
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Match: A0A6H5L5A8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A8_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 2.280e-69
Identity = 134/213 (62.91%), Postives = 156/213 (73.24%), Query Frame = 1 
Query:  574 PLATRDSVLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQ---IHEGGSFAEVDFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSNIDVCVITHKRGLEHHRGAWRDPGVGDDAGAGRQLAQVLGTTGMGCAQHAATFPRKMEAAHQRQQQQQEGQRFDANVDVVEVVEVGGEDGSRAWVG 1203
            PLA+ DS LD VQR++LRV AAA LLKRHLF+YQGTVSAA VLGGVD IGEH+YQ   IHEGGS AEV+FTAMGSGSLAALSVLERG+RENL+E+E KELVL+ IAAGIDNDLGSGSNID+CVIT + GLEHHRGAW DPG+ DD  A R+L + +              P +++A+             D+  D  +VV VGGE GS AWVG
Sbjct:   76 PLASCDSGLDEVQRKHLRVGAAALLLKRHLFQYQGTVSAAFVLGGVDVIGEHIYQAPLIHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQETKELVLEGIAAGIDNDLGSGSNIDLCVITAEGGLEHHRGAWTDPGLDDDGIAARELPEGI----------ERLEPNQLDASG------------DSERDGFDVV-VGGEGGSGAWVG 265
[Close]
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Match: A0A836CF21_9STRA (Nucleophile aminohydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF21_9STRA)

HSP 1 Score: 197 bits (502), Expect = 3.780e-54
Identity = 120/246 (48.78%), Postives = 151/246 (61.38%), Query Frame = 1 
Query:  229 LRRFASTRAMKTGTTIAGVVFEGGVVLGADTRATQGKTVCDRNCDKIHILAANIACCGAGTTADAVRITEGARLALLRMAGEMQACLPSSRFPLTRNQASNGDSGSEGDSNSSDVPLATRDSVLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQIHEGGSFAEVDFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSNIDVCVITHKRGLEHHR 966
            L  F + R  KTGTTI GVV +  +VLGADTRAT  +TV D+NC+KIH +AANI CCGAGT+AD  R+T  ARL ++     MQ+  P+    L+                             D VQRQ+ RVAAA   LK   +     VSAA VLGGVD  G HLY I + GS ++  F A+GSGS+AALSVLE  +++ +SE+ A +LV  AIAAGIDNDLGSGSNID+C+I  K  +E+HR
Sbjct:   39 LDDFIAARVRKTGTTIVGVVCDDCLVLGADTRATNDRTVADKNCEKIHKIAANIYCCGAGTSADCERLTLEARLRMMEFTRLMQSVHPAHSGELST----------------------------DDVQRQHCRVAAAHRFLKNATYHSVEDVSAAFVLGGVDTTGPHLYAIDQDGSSSKGPFAALGSGSMAALSVLESEYQDGISEQAAMDLVCLAIAAGIDNDLGSGSNIDLCII-RKHTVEYHR 255
[Close]
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Match: A0A812N4R2_9DINO (Proteasome subunit beta n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812N4R2_9DINO)

HSP 1 Score: 193 bits (491), Expect = 2.890e-53
Identity = 117/247 (47.37%), Postives = 146/247 (59.11%), Query Frame = 1 
Query:  250 RAMKTGTTIAGVVFEGGVVLGADTRATQGKTVCDRNCDKIHILAANIACCGAGTTADAVRITEGARLALLRMAGEMQACLPSSRFPLTRNQASNGDSGSEGDSNSSDVPLATRDSVLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQIHEGGSFAEVDFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSNIDVCVITHKRGLEHHRGAWRDPGV 990
            +A+KTGTTI GVVF+GGVVLGADTRAT+G  V D+NC+KIH LA NI CCGAGT AD   IT+                L +S   L R Q                  + T+            RV  A  LLKR LF+YQG +SAALVLGGVD  G HLY ++  GS  ++ F +MGSGSLAA+++LE G+++ L+E+EAK LV +AI AGI NDLGSGSN+D+ +I      E  R      GV
Sbjct:   24 KALKTGTTICGVVFDGGVVLGADTRATEGTVVADKNCEKIHYLAPNIHCCGAGTAADTENITQ----------------LTASNLELLRRQ------------------MGTQS-----------RVVTAMTLLKRRLFQYQGHISAALVLGGVDCTGPHLYTVYPHGSTDKLPFVSMGSGSLAAMAMLESGYKDGLTEDEAKALVARAIRAGIFNDLGSGSNVDLTIIRTDGATEQLRSYESQNGV 225
[Close]
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Match: A9S713_PHYPA (Proteasome subunit beta n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9S713_PHYPA)

HSP 1 Score: 192 bits (487), Expect = 1.120e-52
Identity = 114/236 (48.31%), Postives = 143/236 (60.59%), Query Frame = 1 
Query:  259 KTGTTIAGVVFEGGVVLGADTRATQGKTVCDRNCDKIHILAANIACCGAGTTADAVRITEGARLALLRMAGEMQACLPSSRFPLTRNQASNGDSGSEGDSNSSDVPLATRDSVLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQIHEGGSFAEVDFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSNIDVCVITHKRGLEHHR 966
            KTGTTI G++F+ GV+LGADTRAT+G+ VCD+NC+KIH LA NI+CCGAGT AD   +T+                + SS+  L R                       R+S          RV  A  +LK HLFRYQG VSAALVLGGVD  G HL+ ++  GS   + F  MGSGSLAA+SV E  ++ENL++EE  E+V  AI AGI NDLGSGSN+D+C+IT K G E+ R
Sbjct:   38 KTGTTIVGLIFKDGVILGADTRATEGEIVCDKNCEKIHYLAPNISCCGAGTAADTENVTD----------------MVSSQLVLHRYATG-------------------RES----------RVVTALTMLKSHLFRYQGQVSAALVLGGVDVTGPHLHAVYPHGSTDTLPFATMGSGSLAAMSVFESRYKENLTKEEGMEIVSAAICAGIFNDLGSGSNVDLCIIT-KEGKEYLR 227
[Close]
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Match: B8LCN6_THAPS (Proteasome subunit beta (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LCN6_THAPS)

HSP 1 Score: 192 bits (487), Expect = 2.050e-52
Identity = 116/228 (50.88%), Postives = 137/228 (60.09%), Query Frame = 1 
Query:  253 AMKTGTTIAGVVFEGGVVLGADTRATQGKTVCDRNCDKIHILAANIACCGAGTTADAVRITEGARLALLRMAGEMQACLPSSRFPLTRNQASNGDSGSEGDSNSSDVPLATRDSVLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQIHEGGSFAEVDFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSNIDVCVI 936
            A KTGTTI G+V+ GG+VLGADTR+T   TV D+NC+KIH +A NI CCGAGT AD  + TE                L SS+  L R    +G S                            RV  A  LLKR LFRYQG VSAALVLGG D  G HLYQI+  GS  ++ FT MGSGSLAA++V E  +R++LSEEEA ELV ++I AGI NDLGSGSN+D CVI
Sbjct:   48 ATKTGTTIVGLVYPGGIVLGADTRSTNDTTVADKNCEKIHYIAPNIYCCGAGTAADTEKSTE----------------LISSQMELLRMNTGDGQS----------------------------RVVTACTLLKRMLFRYQGYVSAALVLGGCDVNGPHLYQIYPHGSTGKLPFTTMGSGSLAAMAVFEADYRDDLSEEEAVELVKRSILAGIFNDLGSGSNVDTCVI 231
[Close]
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Match: A0A1S2Y6H9_CICAR (Proteasome subunit beta n=8 Tax=NPAAA clade TaxID=2231382 RepID=A0A1S2Y6H9_CICAR)

HSP 1 Score: 190 bits (483), Expect = 3.730e-52
Identity = 115/238 (48.32%), Postives = 142/238 (59.66%), Query Frame = 1 
Query:  256 MKTGTTIAGVVFEGGVVLGADTRATQGKTVCDRNCDKIHILAANIACCGAGTTADAVRITEGARLALLRMAGEMQACLPSSRFPLTRNQASNGDSGSEGDSNSSDVPLATRDSVLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQIHEGGSFAEVDFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSNIDVCVIT--HKRGLEHH 963
            +KTGTTI G+VF+ G++LGADTRAT+G  V D+NC+KIH +A NI CCGAGT AD   +T+                + SS+  L R                       R+S          RV  A  LLKRHLF YQG VSAALVLGGVD  G HL+ I+  GS   + F  MGSGSLAA+SV E  ++E+LS +E  +LV++AI AGI NDLGSGSN+DVCVIT  HK  L +H
Sbjct:   35 LKTGTTIVGLVFQDGIILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTD----------------MVSSQLQLHRYHTG-------------------RES----------RVVTALTLLKRHLFNYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFESKYKESLSRDEGVKLVVEAICAGIFNDLGSGSNVDVCVITKGHKEYLRNH 227
[Close]
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Match: A0A835ZKI2_9STRA (Proteasome endopeptidase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKI2_9STRA)

HSP 1 Score: 190 bits (483), Expect = 7.910e-52
Identity = 117/242 (48.35%), Postives = 143/242 (59.09%), Query Frame = 1 
Query:  250 RAMKTGTTIAGVVFEGGVVLGADTRATQGKTVCDRNCDKIHILAANIACCGAGTTADAVRITE--GARLALLRMAGEMQACLPSSRFPLTRNQASNGDSGSEGDSNSSDVPLATRDSVLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQIHEGGSFAEVDFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSNIDVCVITHKRGLEHHRG 969
            RA  TGTTI G V++ G+VLGADTRAT G  VCD+NC+KIH LA NI CCGAGT AD  + TE   ++L LLR++   Q+                                               RV  A  +LKR LFRYQG VSAALVLGGVDA G HLY I+  GS  ++ +  MGSGSLAA+SV E G++E+++EEEA +LV +AI AGI NDLGSGSN D+ VI  K  +  HRG
Sbjct:   53 RAKLTGTTICGCVYKDGIVLGADTRATGGTEVCDKNCEKIHYLAPNIYCCGAGTAADTEKTTELISSQLDLLRLSTGTQS-----------------------------------------------RVVTACTMLKRMLFRYQGHVSAALVLGGVDATGPHLYNIYPHGSSDKLPYVTMGSGSLAAMSVFETGYKEDMTEEEATDLVKEAILAGIFNDLGSGSNCDITVI-RKGEVSRHRG 246
[Close]
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Match: C1EBX1_MICCC (Proteasome subunit beta n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EBX1_MICCC)

HSP 1 Score: 190 bits (483), Expect = 8.140e-52
Identity = 110/229 (48.03%), Postives = 135/229 (58.95%), Query Frame = 1 
Query:  253 AMKTGTTIAGVVFEGGVVLGADTRATQGKTVCDRNCDKIHILAANIACCGAGTTADAVRITEGARLALLRMAGEMQACLPSSRFPLTRNQASNGDSGSEGDSNSSDVPLATRDSVLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQIHEGGSFAEVDFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSNIDVCVIT 939
            AMKTGTTI GV F+GGVVLGADTR+T G+TV D+NC+KIH +A NI CCGAGT AD   +T           G + + L   R    R                                    RV  A  +LK HLF+YQG V AALVLGGVD  G HL+ +H  GS   + F  MGSGSLAA++V E   +E+++EEEAKE+V ++I AGI NDLGSGSN+D+CVIT
Sbjct:   44 AMKTGTTITGVCFKGGVVLGADTRSTNGETVADKNCEKIHYIAPNIYCCGAGTAADTEAVT-----------GMIASALELHRLATKRKS----------------------------------RVVTALTMLKSHLFKYQGHVGAALVLGGVDINGPHLFSVHPHGSSDSLPFATMGSGSLAAMAVFEADFKEDMTEEEAKEIVARSIRAGIFNDLGSGSNVDLCVIT 227
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig100.687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNE6_9PHAE1.770e-16163.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTB7_ECTSI3.310e-12475.36Proteasome subunit beta 2 n=1 Tax=Ectocarpus silic... [more]
A0A6H5L5A8_9PHAE2.280e-6962.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CF21_9STRA3.780e-5448.78Nucleophile aminohydrolase n=1 Tax=Tribonema minus... [more]
A0A812N4R2_9DINO2.890e-5347.37Proteasome subunit beta n=1 Tax=Symbiodinium sp. K... [more]
A9S713_PHYPA1.120e-5248.31Proteasome subunit beta n=2 Tax=Physcomitrium pate... [more]
B8LCN6_THAPS2.050e-5250.88Proteasome subunit beta (Fragment) n=1 Tax=Thalass... [more]
A0A1S2Y6H9_CICAR3.730e-5248.32Proteasome subunit beta n=8 Tax=NPAAA clade TaxID=... [more]
A0A835ZKI2_9STRA7.910e-5248.35Proteasome endopeptidase complex n=1 Tax=Tribonema... [more]
C1EBX1_MICCC8.140e-5248.03Proteasome subunit beta n=1 Tax=Micromonas commoda... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig100contigC-linearis_contig100:205472..209856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score384.4
Seed ortholog evalue6.9e-104
Seed eggNOG ortholog2880.D7FTB7
KEGG koko:K02739
KEGG Pathwayko03050,map03050
KEGG ModuleM00340
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0173@2759
Ec32 ortholog descriptionproteasome subunit beta 2
Ec32 orthologEc-05_000270.1
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Exons7
Model size1964
Cds size1299
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927356.169107-UTR-C-linearis_contig100:205471..2054891622927356.169107-UTR-C-linearis_contig100:205471..205489Chordaria linearis ClinC8C monoicousUTRC-linearis_contig100 205472..205489 +
1690879649.441824-UTR-C-linearis_contig100:205471..2054891690879649.441824-UTR-C-linearis_contig100:205471..205489Chordaria linearis ClinC8C monoicousUTRC-linearis_contig100 205472..205489 +
1622927356.2797399-UTR-C-linearis_contig100:209209..2098561622927356.2797399-UTR-C-linearis_contig100:209209..209856Chordaria linearis ClinC8C monoicousUTRC-linearis_contig100 209210..209856 +
1690879649.5126078-UTR-C-linearis_contig100:209209..2098561690879649.5126078-UTR-C-linearis_contig100:209209..209856Chordaria linearis ClinC8C monoicousUTRC-linearis_contig100 209210..209856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927356.1915557-CDS-C-linearis_contig100:205489..2057651622927356.1915557-CDS-C-linearis_contig100:205489..205765Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 205490..205765 +
1690879649.4523761-CDS-C-linearis_contig100:205489..2057651690879649.4523761-CDS-C-linearis_contig100:205489..205765Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 205490..205765 +
1622927356.2058623-CDS-C-linearis_contig100:206492..2066361622927356.2058623-CDS-C-linearis_contig100:206492..206636Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 206493..206636 +
1690879649.460358-CDS-C-linearis_contig100:206492..2066361690879649.460358-CDS-C-linearis_contig100:206492..206636Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 206493..206636 +
1622927356.2194583-CDS-C-linearis_contig100:206944..2072441622927356.2194583-CDS-C-linearis_contig100:206944..207244Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 206945..207244 +
1690879649.4689577-CDS-C-linearis_contig100:206944..2072441690879649.4689577-CDS-C-linearis_contig100:206944..207244Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 206945..207244 +
1622927356.2309358-CDS-C-linearis_contig100:207784..2078651622927356.2309358-CDS-C-linearis_contig100:207784..207865Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 207785..207865 +
1690879649.477947-CDS-C-linearis_contig100:207784..2078651690879649.477947-CDS-C-linearis_contig100:207784..207865Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 207785..207865 +
1622927356.245267-CDS-C-linearis_contig100:208360..2085681622927356.245267-CDS-C-linearis_contig100:208360..208568Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 208361..208568 +
1690879649.4889877-CDS-C-linearis_contig100:208360..2085681690879649.4889877-CDS-C-linearis_contig100:208360..208568Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 208361..208568 +
1622927356.25736-CDS-C-linearis_contig100:208885..2089391622927356.25736-CDS-C-linearis_contig100:208885..208939Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 208886..208939 +
1690879649.4969985-CDS-C-linearis_contig100:208885..2089391690879649.4969985-CDS-C-linearis_contig100:208885..208939Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 208886..208939 +
1622927356.2682202-CDS-C-linearis_contig100:208973..2092091622927356.2682202-CDS-C-linearis_contig100:208973..209209Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 208974..209209 +
1690879649.5046134-CDS-C-linearis_contig100:208973..2092091690879649.5046134-CDS-C-linearis_contig100:208973..209209Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 208974..209209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig100.687.1prot_C-linearis_contig100.687.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig100 205490..209209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig100.687.1

>prot_C-linearis_contig100.687.1 ID=prot_C-linearis_contig100.687.1|Name=mRNA_C-linearis_contig100.687.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=433bp
MMSWCLMIAVLLSGPAVTPCGGTVYGGSARPSYGMRSPGEDSGSGAIRRD
SAAPGAFAIASGDHGGGAEALRRFASTRAMKTGTTIAGVVFEGGVVLGAD
TRATQGKTVCDRNCDKIHILAANIACCGAGTTADAVRITEGARLALLRMA
GEMQACLPSSRFPLTRNQASNGDSGSEGDSNSSDVPLATRDSVLDVVQRQ
YLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGEHLYQIHEGGSFAEV
DFTAMGSGSLAALSVLERGHRENLSEEEAKELVLQAIAAGIDNDLGSGSN
IDVCVITHKRGLEHHRGAWRDPGVGDDAGAGRQLAQVLGTTGMGCAQHAA
TFPRKMEAAHQRQQQQQEGQRFDANVDVVEVVEVGGEDGSRAWVGDVRRR
TREKSVMKVDHRDGGALRSFRSSALDDKVELL*
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mRNA from alignment at C-linearis_contig100:205472..209856+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig100.687.1 ID=mRNA_C-linearis_contig100.687.1|Name=mRNA_C-linearis_contig100.687.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4385bp|location=Sequence derived from alignment at C-linearis_contig100:205472..209856+ (Chordaria linearis ClinC8C monoicous)
CGGCCACCGCTTGTGTGTATGATGTCGTGGTGCCTCATGATAGCAGTTCT
CCTCAGTGGGCCTGCCGTGACCCCATGCGGTGGTACAGTTTACGGAGGCA
GTGCTCGTCCCAGCTACGGCATGCGGTCTCCCGGGGAAGACAGCGGGAGC
GGCGCAATTAGGAGAGATTCCGCCGCACCTGGTGCGTTTGCGATAGCGAG
TGGTGACCATGGCGGTGGGGCTGAGGCTCTACGAAGGTTTGCGTCGACAC
GCGCCATGAAGACGGGCACCACCATCGCCGGCGTGGTTTTTGAGGTAAGT
TTTGCATTGCGCTGCATTCCATTCGTCTCTCTGCCGCAGAAGAGGGGAAA
GGAACGTCAACCCCTTGCCGTGTTAACGCCAGTTTGGGCATTTTGTACAA
CTGTCCTTGCCAGCAGTAGATATCAAGGTGCTGGTGTTCTTGTACACCCA
CCCTGTGATCCAGTATCCACCCCTTCTGCCCACCCCAACAATAAGCACCA
GGTTTTGAAATGTACCTAACCTAATGACTTGAGATAACACCCCCCTAACG
AAGACCTTGCGTTATAGTCCTCGAGATATCAGCCTCTATAATAGATTCAC
GCGTGCGATGCATTTCGGAGATGAGAAGCACGCCCTGAGTGTACTCATCA
TGTCCTATCGTCCAGGCAGCTCGAGGGTACTCGATATTTTTGCTCCACAG
CTACCCCCTCGAGATGTGATGTAGTATTGCGCTACCACAGCTGCCCCCTC
GAGATGCGATCTACTGCTGCTGAGTAGACATCCCACCGTAGTACATCCAC
AGCAGTAGTGCTGCATTGGGAGGCGTGCCTATGTTTTCCGTTCCTACTCT
CTGTTCCCTTCATCTAGGTAGCCGCGTTGCGCGCTTTCTGTGTAATCCGG
TTCTTTGTTTTCGGTGAGCAAGGGTGGCCGTACACGTTTGCCCTGGACGC
GTCTCGTGTTTCAATACAAGTAGCAGCCGACCGTCATTTGCATGACATGA
CATGTTGCCGCCTTCTGCCAGGGGGGCGTGGTCCTGGGGGCGGATACTCG
AGCAACCCAGGGAAAGACGGTGTGCGATCGCAATTGCGACAAGATCCACA
TCCTCGCCGCCAACATCGCCTGCTGCGGGGCTGGAACCACCGCCGACGCT
GTCAGAATAACTGAGGTGGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTAGTGTTGTGGTTGCTGTGGTTGTTGTTGCTGCTGCT
GCTACTGTGGCTGCTGCTGTGGCTGCTGCTGTGGCTGCTGCTGTGGCTGG
CATTTTTCTTTCGTCGAAGATCAGGTCGCCTGGTGTGGCGATGTTTTCAG
GTCGTTTGGTGTGGTGGTGTCGACGAATGCAACAACGACGTACAAACCTC
CGTTCCCGTGGATCCTAGCACCCCAGTCAGCTTCATTCGACCGTGTATTT
TCATCCCTTATCGCATCTTGCAGGGGGCTCGCCTGGCGCTGTTGCGCATG
GCCGGAGAGATGCAAGCCTGCTTACCGTCCTCAAGATTTCCCCTCACGCG
GAATCAAGCCTCGAACGGCGATAGTGGAAGCGAAGGTGACAGCAACAGCA
GCGATGTGCCGTTGGCCACCCGCGATAGCGTCCTGGACGTGGTGCAGCGG
CAGTACCTTCGCGTCGCGGCGGCAGCGTTTTTGCTGAAACGGCACCTGTT
CCGATACCAGGGCACGGTCTCTGCCGCCCTGGTGCTGGGAGGGGTGGACG
CCATCGGGGAACATCTGTATCAGGTGAGCTTCGCTAGTGCCAAAGCAGCG
GCAGAACGCCCTTTGGTGCCAAGATTTGACACCATGCTACGACGGGGTTG
GACAACAACAGGAACATGTAGCCTTAAACTTGGAAAGGCACACACAGCCG
TTAGCGATTCTTATTGCCTTCGTCCCCAGTCAAGTCGTTGCCCTCTCAAG
GCGCAAAAATGCTCGTCCAGTTGGGTACTTTCTTATCGAGGCGTTCTCTT
TTCGAAGAAAAACTTTCAACGTTGAGTTCTATCTCGCACTGCGTGCAAGC
TGGTTCTCGCTTCGAGTTCCCATGCACACCCCTCCTCTCTTTTTTCTGCC
TGGTCGTCGTCACCAGCATGATCCCAACCCACAGTTCCCACAGCTTCCCT
CTGCCTTGGGGTTCGGAAAACAGCAGCCATATTGCTATCAAGGCCATCGC
TCGTTCGCGGTGAAGTCACGAGGAGAAAAACGTGCAATCTCTGTCCACTC
GGTCACTGCAAGCAGCATCTATTGCAACCATCCCTTCGCTCTTCGCTTTT
TGGTGTTGCTCAGATCCACGAAGGGGGAAGCTTCGCCGAGGTGGATTTTA
CTGCCATGGGCAGCGGGAGTCTAGCGGCGCTAAGCGTACTCGAGGTGCAT
ACATACAACAAACACCTCATGCTAAATCACAGCACGGACGCCTCACACTG
ACCCCAGAGTACACACAGTAGTGCAGGACGCCTTCTTATGGTGTGGAATG
TCGAATACGCGCGACAAGAGAGGAAACGAATAGGAGTGGACACGCTTCGC
AAGAGTGTGGGTGGACAACAGTTGGGAGTTGATGATCTCCCGCCTGCGTC
TTCCACATGGTTTTCTTGTACATGGTTAGACCTCGTCCATACGTGTCGTG
GTTCTCGGAGTAACCCTGTCAATCTTTCGTCGTGCGTCGTGCATCGTGCA
TCGTACATCGTGTTTCGTGCACCATGTAGCGTGCATTGCGAATCATGGCA
TTGTGCAGCATGCAACGTGCATCCGTGATTGATTGTGCGTTCGTGCACTT
ATGTATCGTAAATCGTGAATCATCGCTCTATGCACTTATGCCATGCCTCC
TGCATCGTGCATCGTGCATCATGTTGCATCATGAATCAGCGGGGCCACCG
GGAAAACTTGAGCGAAGAGGAAGCGAAGGAACTTGTCCTGCAAGCCATCG
CCGCGGGGATAGACAACGACTTGGGCAGCGGGAGCAACATCGACGTGTGC
GTCATCACGCACAAGAGAGGCCTGGAGCACCACAGGGGGGCTTGGAGAGA
CCCAGGTGTTGGCGATGATGCTGGTGCTGGTCGACAGCTCGCCCAAGGTC
AGCCCTTGTCATGAATATATCGTTGTCAGGAAGAATGTCAGAAGAATGTC
AGGAAGAACCAAGACCAAAACTCTTTTATCTGTATTATCTGGTGTCATTT
TTATTTTCCTTTTTTGCATAAATTGATAGAGGTATCTTATTAAAATAAGG
ATCTTATGGGTTTTTGCGATTTTCTTTAGGTCTTTTTCCAGAAGCTTCGG
TATCTTTCACATGGCAGCAGTGCATCAATGTTCAGCTGGCGTGTATCAAT
GTTCACCCGTTGTCCTCTACGCCAAGGTGCAAAACATTCTGCGCTCGTAC
TTCAAATCACTAAGTTCTTGGAACAACCGGTATGGGCTGCGCGCAACATG
CGGCAACATTTCCGAGGAGTGAACTCGTTCTGACCCCGCGTGCTGACCGC
AGAAATGGAGGCTGCTCACCAACGGCAGCAGCAGCAGCAGGAAGGCCAAC
GTTTTGACGCGAATGTTGATGTCGTCGAGGTCGTCGAGGTCGGCGGAGAA
GACGGGTCGCGAGCGTGGGTAGGAGACGTCCGGCGAAGAACGAGAGAGAA
GAGCGTGATGAAGGTGGACCACCGCGACGGCGGAGCGTTGCGGAGCTTCC
GGAGCAGCGCTCTTGATGACAAGGTCGAACTTCTGTAGTGTTTGGTGATT
TTTTTTGCGTTTACCTCGGTGCTTCGCTGTAGATTGTTGCTCTTGACGGC
AAAGGTCGAACTGCTGTAATTGGTGGTGGCGCAGATTCCGTCTGTGCCGG
TTATTATAGTTACCGTTCTGCGTCTGGTGGTTTCATGTTCGGAACGACTT
GAGCGATGAATGCACGTGCTATCATTGTGGTGATGAGATGTGGGGGTTGC
TTTGTTTCCATTTGGTGTGTGGATGTGCCCGACATTGTCGTGGGAGGGAA
CCAGCGGGGTCGGTATTTGGCAAGGGTTCGAGTGTCGAGTGTCGAGTGTC
GTCTTGTTTTTTTTGTCAAGTACAAGTACAAGAAATACGACGAAAGAAAA
GGGAAGGCATGCTGTTTTATCGTCTCCGTCGCAAGGACGGACCTCTGATG
CCCGCGCAGTTGGACAGATGTCACTCCGTGATGGGAGGGGGTTTCGAGTT
CGGTAAGCGAGGTCTAGTTGAGTACATACTTCTAGAAGTAAGGGTCGAAG
GGAAAGCTCAACAAAACAAGGGATAGCGTTCAGAAGTGGGGGATGTGCGA
ACAGGCACGGGTCAATGATGCTCTGAAAAGCTGGTATACGTGCGTGAATC
AAACCAGCCTCCGTTGGCCATTGCCAAGGCAGCAA
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Coding sequence (CDS) from alignment at C-linearis_contig100:205472..209856+

>mRNA_C-linearis_contig100.687.1 ID=mRNA_C-linearis_contig100.687.1|Name=mRNA_C-linearis_contig100.687.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2598bp|location=Sequence derived from alignment at C-linearis_contig100:205472..209856+ (Chordaria linearis ClinC8C monoicous)
ATGATGTCGTGGTGCCTCATGATAGCAGTTCTCCTCAGTGGGCCTGCCGT
GACCCCATGCGGTGGTACAGTTTACGGAGGCAGTGCTCGTCCCAGCTACG
GCATGCGGTCTCCCGGGGAAGACAGCGGGAGCGGCGCAATTAGGAGAGAT
TCCGCCGCACCTGGTGCGTTTGCGATAGCGAGTGGTGACCATGGCGGTGG
GGCTGAGGCTCTACGAAGGTTTGCGTCGACACGCGCCATGAAGACGGGCA
CCACCATCGCCGGCGTGGTTTTTGAGATGATGTCGTGGTGCCTCATGATA
GCAGTTCTCCTCAGTGGGCCTGCCGTGACCCCATGCGGTGGTACAGTTTA
CGGAGGCAGTGCTCGTCCCAGCTACGGCATGCGGTCTCCCGGGGAAGACA
GCGGGAGCGGCGCAATTAGGAGAGATTCCGCCGCACCTGGTGCGTTTGCG
ATAGCGAGTGGTGACCATGGCGGTGGGGCTGAGGCTCTACGAAGGTTTGC
GTCGACACGCGCCATGAAGACGGGCACCACCATCGCCGGCGTGGTTTTTG
AGGGGGGCGTGGTCCTGGGGGCGGATACTCGAGCAACCCAGGGAAAGACG
GTGTGCGATCGCAATTGCGACAAGATCCACATCCTCGCCGCCAACATCGC
CTGCTGCGGGGCTGGAACCACCGCCGACGCTGTCAGAATAACTGAGGGGG
GCGTGGTCCTGGGGGCGGATACTCGAGCAACCCAGGGAAAGACGGTGTGC
GATCGCAATTGCGACAAGATCCACATCCTCGCCGCCAACATCGCCTGCTG
CGGGGCTGGAACCACCGCCGACGCTGTCAGAATAACTGAGGGGGCTCGCC
TGGCGCTGTTGCGCATGGCCGGAGAGATGCAAGCCTGCTTACCGTCCTCA
AGATTTCCCCTCACGCGGAATCAAGCCTCGAACGGCGATAGTGGAAGCGA
AGGTGACAGCAACAGCAGCGATGTGCCGTTGGCCACCCGCGATAGCGTCC
TGGACGTGGTGCAGCGGCAGTACCTTCGCGTCGCGGCGGCAGCGTTTTTG
CTGAAACGGCACCTGTTCCGATACCAGGGCACGGTCTCTGCCGCCCTGGT
GCTGGGAGGGGTGGACGCCATCGGGGAACATCTGTATCAGGGGGCTCGCC
TGGCGCTGTTGCGCATGGCCGGAGAGATGCAAGCCTGCTTACCGTCCTCA
AGATTTCCCCTCACGCGGAATCAAGCCTCGAACGGCGATAGTGGAAGCGA
AGGTGACAGCAACAGCAGCGATGTGCCGTTGGCCACCCGCGATAGCGTCC
TGGACGTGGTGCAGCGGCAGTACCTTCGCGTCGCGGCGGCAGCGTTTTTG
CTGAAACGGCACCTGTTCCGATACCAGGGCACGGTCTCTGCCGCCCTGGT
GCTGGGAGGGGTGGACGCCATCGGGGAACATCTGTATCAGATCCACGAAG
GGGGAAGCTTCGCCGAGGTGGATTTTACTGCCATGGGCAGCGGGAGTCTA
GCGGCGCTAAGCGTACTCGAGATCCACGAAGGGGGAAGCTTCGCCGAGGT
GGATTTTACTGCCATGGGCAGCGGGAGTCTAGCGGCGCTAAGCGTACTCG
AGCGGGGCCACCGGGAAAACTTGAGCGAAGAGGAAGCGAAGGAACTTGTC
CTGCAAGCCATCGCCGCGGGGATAGACAACGACTTGGGCAGCGGGAGCAA
CATCGACGTGTGCGTCATCACGCACAAGAGAGGCCTGGAGCACCACAGGG
GGGCTTGGAGAGACCCAGGTGTTGGCGATGATGCTGGTGCTGGTCGACAG
CTCGCCCAAGCGGGGCCACCGGGAAAACTTGAGCGAAGAGGAAGCGAAGG
AACTTGTCCTGCAAGCCATCGCCGCGGGGATAGACAACGACTTGGGCAGC
GGGAGCAACATCGACGTGTGCGTCATCACGCACAAGAGAGGCCTGGAGCA
CCACAGGGGGGCTTGGAGAGACCCAGGTGTTGGCGATGATGCTGGTGCTG
GTCGACAGCTCGCCCAAGTTCTTGGAACAACCGGTATGGGCTGCGCGCAA
CATGCGGCAACATTTCCGAGGATTCTTGGAACAACCGGTATGGGCTGCGC
GCAACATGCGGCAACATTTCCGAGGAAAATGGAGGCTGCTCACCAACGGC
AGCAGCAGCAGCAGGAAGGCCAACGTTTTGACGCGAATGTTGATGTCGTC
GAGGTCGTCGAGGTCGGCGGAGAAGACGGGTCGCGAGCGTGGGTAGGAGA
CGTCCGGCGAAGAACGAGAGAGAAGAGCGTGATGAAGGTGGACCACCGCG
ACGGCGGAGCGTTGCGGAGCTTCCGGAGCAGCGCTCTTGATGACAAGGTC
GAACTTCTGTAGAAATGGAGGCTGCTCACCAACGGCAGCAGCAGCAGCAG
GAAGGCCAACGTTTTGACGCGAATGTTGATGTCGTCGAGGTCGTCGAGGT
CGGCGGAGAAGACGGGTCGCGAGCGTGGGTAGGAGACGTCCGGCGAAGAA
CGAGAGAGAAGAGCGTGATGAAGGTGGACCACCGCGACGGCGGAGCGTTG
CGGAGCTTCCGGAGCAGCGCTCTTGATGACAAGGTCGAACTTCTGTAG
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