mRNA_C-linearis_contig100.694.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig100.694.1
Unique NamemRNA_C-linearis_contig100.694.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig100.694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig100contigC-linearis_contig100:326413..326929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size519
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927353.212176-CDS-C-linearis_contig100:326412..3267541622927353.212176-CDS-C-linearis_contig100:326412..326754Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 326413..326754 +
1690879647.1183712-CDS-C-linearis_contig100:326412..3267541690879647.1183712-CDS-C-linearis_contig100:326412..326754Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 326413..326754 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927353.2246776-UTR-C-linearis_contig100:326754..3269291622927353.2246776-UTR-C-linearis_contig100:326754..326929Chordaria linearis ClinC8C monoicousUTRC-linearis_contig100 326755..326929 +
1690879647.1287513-UTR-C-linearis_contig100:326754..3269291690879647.1287513-UTR-C-linearis_contig100:326754..326929Chordaria linearis ClinC8C monoicousUTRC-linearis_contig100 326755..326929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig100.694.1prot_C-linearis_contig100.694.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig100 326413..326754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig100.694.1

>prot_C-linearis_contig100.694.1 ID=prot_C-linearis_contig100.694.1|Name=mRNA_C-linearis_contig100.694.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=114bp
RLVITQKRIQIDALQSRFWSDISVNLQNFDKNKKRPGNCETRSNKSVPGR
VFLYRQRAHPWKKNSRYSGFVSIKSRGKKKKTVGHSMRLETGRLPVLSDV
GTTTCLSVCREKL*
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mRNA from alignment at C-linearis_contig100:326413..326929+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig100.694.1 ID=mRNA_C-linearis_contig100.694.1|Name=mRNA_C-linearis_contig100.694.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=517bp|location=Sequence derived from alignment at C-linearis_contig100:326413..326929+ (Chordaria linearis ClinC8C monoicous)
CGGTTAGTTATCACCCAAAAAAGAATTCAAATTGATGCTCTACAGAGTCG
GTTTTGGAGCGATATCTCCGTCAATTTACAAAATTTCGATAAAAACAAAA
AACGACCTGGCAATTGCGAGACGCGTTCAAATAAATCCGTACCTGGTAGA
GTTTTTTTATATCGGCAAAGAGCACACCCCTGGAAAAAGAATTCAAGATA
TTCCGGTTTTGTGTCGATAAAAAGTAGAGGAAAAAAAAAAAAAACTGTCG
GTCACTCCATGCGCCTGGAAACAGGGCGTTTGCCGGTACTTTCAGATGTC
GGAACAACCACCTGTCTGTCTGTGTGCAGAGAAAAGTTGTAATTTGTGCT
GGGATTTTTTTGTATTTTCTGTTGTGCATGGACTATAGTGCCCAACAAGA
TAAATCACACCGAAATGACGATTTTGCCGAAGCAAGCTTCGCGTGAACGA
CCCGGAGGGCGCCCCAAAAAGCAGCCCCAAAAGAACTCCGCTGGCGAACT
CACAGTTTTTGTGATCG
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Coding sequence (CDS) from alignment at C-linearis_contig100:326413..326929+

>mRNA_C-linearis_contig100.694.1 ID=mRNA_C-linearis_contig100.694.1|Name=mRNA_C-linearis_contig100.694.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at C-linearis_contig100:326413..326929+ (Chordaria linearis ClinC8C monoicous)
CGGTTAGTTATCACCCAAAAAAGAATTCAAATTGATGCTCTACAGAGTCG
GTTTTGGAGCGATATCTCCGTCAATTTACAAAATTTCGATAAAAACAAAA
AACGACCTGGCAATTGCGAGACGCGTTCAAATAAATCCGTACCTGGTAGA
GTTTTTTTATATCGGCAAAGAGCACACCCCTGGAAAAAGAATTCAAGATA
TTCCGGTTTTGTGTCGATAAAAAGTAGAGGAAAAAAAAAAAAAACTGTCG
GTCACTCCATGCGCCTGGAAACAGGGCGTTTGCCGGTACTTTCAGATGTC
GGAACAACCACCTGTCTGTCTGTGTGCAGAGAAAAGTTGTAACGGTTAGT
TATCACCCAAAAAAGAATTCAAATTGATGCTCTACAGAGTCGGTTTTGGA
GCGATATCTCCGTCAATTTACAAAATTTCGATAAAAACAAAAAACGACCT
GGCAATTGCGAGACGCGTTCAAATAAATCCGTACCTGGTAGAGTTTTTTT
ATATCGGCAAAGAGCACACCCCTGGAAAAAGAATTCAAGATATTCCGGTT
TTGTGTCGATAAAAAGTAGAGGAAAAAAAAAAAAAACTGTCGGTCACTCC
ATGCGCCTGGAAACAGGGCGTTTGCCGGTACTTTCAGATGTCGGAACAAC
CACCTGTCTGTCTGTGTGCAGAGAAAAGTTGTAA
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