mRNA_C-linearis_contig100.692.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig100.692.1
Unique NamemRNA_C-linearis_contig100.692.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig100.692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig100contigC-linearis_contig100:284285..284667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size385
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927353.15751-UTR-C-linearis_contig100:284284..2843611622927353.15751-UTR-C-linearis_contig100:284284..284361Chordaria linearis ClinC8C monoicousUTRC-linearis_contig100 284285..284361 +
1690879647.1001146-UTR-C-linearis_contig100:284284..2843611690879647.1001146-UTR-C-linearis_contig100:284284..284361Chordaria linearis ClinC8C monoicousUTRC-linearis_contig100 284285..284361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927353.1744092-CDS-C-linearis_contig100:284361..2846671622927353.1744092-CDS-C-linearis_contig100:284361..284667Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 284362..284667 +
1690879647.1092958-CDS-C-linearis_contig100:284361..2846671690879647.1092958-CDS-C-linearis_contig100:284361..284667Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 284362..284667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig100.692.1prot_C-linearis_contig100.692.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig100 284362..284667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig100.692.1

>prot_C-linearis_contig100.692.1 ID=prot_C-linearis_contig100.692.1|Name=mRNA_C-linearis_contig100.692.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=102bp
MFHACVFRVLASHPFCTAASLHLLALPAGVTAVAEANSVCEAPISGWPNV
CVFSSPLFWRQSLSDQGETCTARCGVFRVLHLFSVFFCTTRTNRGHTGGG
KH
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mRNA from alignment at C-linearis_contig100:284285..284667+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig100.692.1 ID=mRNA_C-linearis_contig100.692.1|Name=mRNA_C-linearis_contig100.692.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=383bp|location=Sequence derived from alignment at C-linearis_contig100:284285..284667+ (Chordaria linearis ClinC8C monoicous)
CGGGGTTGGATGAAATATTCAGGTCAGATGCGTTGACTTGACCAGCCTCC
CCGTTATTGCGCCATGGATCATGTGTCATGTTTCATGCGTGCGTATTCCG
AGTGCTTGCGTCCCATCCATTCTGTACTGCGGCCAGTCTCCATCTTTTGG
CGTTACCAGCCGGGGTGACAGCAGTGGCGGAGGCAAACAGTGTGTGCGAA
GCGCCGATAAGCGGCTGGCCAAATGTGTGTGTGTTTTCGTCCCCTTTATT
TTGGCGGCAGTCCCTTTCCGATCAAGGTGAGACGTGTACTGCACGTTGCG
GTGTATTCAGAGTACTACACTTGTTCAGTGTATTTTTCTGTACAACTAGA
ACCAACCGGGGTCACACAGGAGGGGGTAAACAC
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Coding sequence (CDS) from alignment at C-linearis_contig100:284285..284667+

>mRNA_C-linearis_contig100.692.1 ID=mRNA_C-linearis_contig100.692.1|Name=mRNA_C-linearis_contig100.692.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at C-linearis_contig100:284285..284667+ (Chordaria linearis ClinC8C monoicous)
ATGTTTCATGCGTGCGTATTCCGAGTGCTTGCGTCCCATCCATTCTGTAC
TGCGGCCAGTCTCCATCTTTTGGCGTTACCAGCCGGGGTGACAGCAGTGG
CGGAGGCAAACAGTGTGTGCGAAGCGCCGATAAGCGGCTGGCCAAATGTG
TGTGTGTTTTCGTCCCCTTTATTTTGGCGGCAGTCCCTTTCCGATCAAGG
TGAGACGTGTACTGCACGTTGCGGTGTATTCAGAGTACTACACTTGTTCA
GTGTATTTTTCTGTACAACTAGAACCAACCGGGGTCACACAGGAGGGGGT
AAACACATGTTTCATGCGTGCGTATTCCGAGTGCTTGCGTCCCATCCATT
CTGTACTGCGGCCAGTCTCCATCTTTTGGCGTTACCAGCCGGGGTGACAG
CAGTGGCGGAGGCAAACAGTGTGTGCGAAGCGCCGATAAGCGGCTGGCCA
AATGTGTGTGTGTTTTCGTCCCCTTTATTTTGGCGGCAGTCCCTTTCCGA
TCAAGGTGAGACGTGTACTGCACGTTGCGGTGTATTCAGAGTACTACACT
TGTTCAGTGTATTTTTCTGTACAACTAGAACCAACCGGGGTCACACAGGA
GGGGGTAAACAC
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