mRNA_C-linearis_contig100.679.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig100.679.1
Unique NamemRNA_C-linearis_contig100.679.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig100.679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig100contigC-linearis_contig100:21429..22061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size352
Cds size300
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig100.679.1prot_C-linearis_contig100.679.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig100 21481..22061 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927352.7899144-UTR-C-linearis_contig100:21428..214801622927352.7899144-UTR-C-linearis_contig100:21428..21480Chordaria linearis ClinC8C monoicousUTRC-linearis_contig100 21429..21480 -
1690879646.8138828-UTR-C-linearis_contig100:21428..214801690879646.8138828-UTR-C-linearis_contig100:21428..21480Chordaria linearis ClinC8C monoicousUTRC-linearis_contig100 21429..21480 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927352.8056376-CDS-C-linearis_contig100:21480..216651622927352.8056376-CDS-C-linearis_contig100:21480..21665Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 21481..21665 -
1690879646.8940756-CDS-C-linearis_contig100:21480..216651690879646.8940756-CDS-C-linearis_contig100:21480..21665Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 21481..21665 -
1622927352.816146-CDS-C-linearis_contig100:21946..220611622927352.816146-CDS-C-linearis_contig100:21946..22061Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 21947..22061 -
1690879646.9122734-CDS-C-linearis_contig100:21946..220611690879646.9122734-CDS-C-linearis_contig100:21946..22061Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 21947..22061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig100.679.1

>prot_C-linearis_contig100.679.1 ID=prot_C-linearis_contig100.679.1|Name=mRNA_C-linearis_contig100.679.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=100bp
ITFWVCVREISTEGNRRVLTEATTGAEAGTTSEDGSHAGSNDKLSSSGVA
SHGQSRVASLFSPSNVWSSRSRQHQVVAIETSTTACTMIGRRRTMCGAK*
back to top

mRNA from alignment at C-linearis_contig100:21429..22061-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig100.679.1 ID=mRNA_C-linearis_contig100.679.1|Name=mRNA_C-linearis_contig100.679.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=633bp|location=Sequence derived from alignment at C-linearis_contig100:21429..22061- (Chordaria linearis ClinC8C monoicous)
ATAACGTTCTGGGTGTGTGTGCGGGAGATTTCTACGGAGGGGAATCGACG
GGTCCTTACAGAAGCAACAACAGGAGCAGAAGCAGGAACAACTTCAGAAG
ATGGGAGTCACGCTGGTACGTAGTACGTCCTTAAGAGCCAGCCAGAACAC
CCAGAAAAACACTCATTGCAAAACCAAAACAACAGCGGCGGAGACGCGAT
GCTGCTGGCGGCGATAACGAAAAAAGTGAAGACGATTCTCATCTTTGCCG
TGGCCGTTCTAGAACAAGTCGACTGCATGCATGCTTGTCTTTGCGATGGC
GAGCCGGTACGGGCTCGAGACACCGTTATGCTTTTCGTCAGCCCGATGAC
CCTTGTCCCCCCCATCTGGAACATCGTCAACGTCATGATACACCAGGGTC
GAACGATAAGTTGTCCTCCAGCGGCGTTGCCAGCCATGGGCAATCCAGGG
TGGCATCACTTTTTTCTCCGTCGAACGTTTGGAGTTCTCGCAGTCGGCAG
CACCAGGTGGTTGCGATCGAGACGTCTACGACTGCATGCACCATGATTGG
ACGGCGACGGACGATGTGTGGGGCAAAATAGAATGTTGCTGCTCTTGCTC
CGCACTGCGCCAGTTTCGGAAAAGCACCCCCAC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig100:21429..22061-

>mRNA_C-linearis_contig100.679.1 ID=mRNA_C-linearis_contig100.679.1|Name=mRNA_C-linearis_contig100.679.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at C-linearis_contig100:21429..22061- (Chordaria linearis ClinC8C monoicous)
ATAACGTTCTGGGTGTGTGTGCGGGAGATTTCTACGGAGGGGAATCGACG
GGTCCTTACAGAAGCAACAACAGGAGCAGAAGCAGGAACAACTTCAGAAG
ATGGGAGTCACGCTGATAACGTTCTGGGTGTGTGTGCGGGAGATTTCTAC
GGAGGGGAATCGACGGGTCCTTACAGAAGCAACAACAGGAGCAGAAGCAG
GAACAACTTCAGAAGATGGGAGTCACGCTGGGTCGAACGATAAGTTGTCC
TCCAGCGGCGTTGCCAGCCATGGGCAATCCAGGGTGGCATCACTTTTTTC
TCCGTCGAACGTTTGGAGTTCTCGCAGTCGGCAGCACCAGGTGGTTGCGA
TCGAGACGTCTACGACTGCATGCACCATGATTGGACGGCGACGGACGATG
TGTGGGGCAAAATAGGGTCGAACGATAAGTTGTCCTCCAGCGGCGTTGCC
AGCCATGGGCAATCCAGGGTGGCATCACTTTTTTCTCCGTCGAACGTTTG
GAGTTCTCGCAGTCGGCAGCACCAGGTGGTTGCGATCGAGACGTCTACGA
CTGCATGCACCATGATTGGACGGCGACGGACGATGTGTGGGGCAAAATAG
back to top