mRNA_C-linearis_contig10.548.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.548.1
Unique NamemRNA_C-linearis_contig10.548.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.548.1 vs. uniprot
Match: D7FPH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPH8_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 2.020e-59
Identity = 110/232 (47.41%), Postives = 149/232 (64.22%), Query Frame = 2 
Query:  359 YTQENMKALPVSPLLATQWLINDGEYKPSHTWSIPSSASGMVAEAADAQWVCELTPRLFTRKHTYVLFFSGGYNGRTTTSHRFWDYMDREFEELSVDEAKVCSHNRLQVQGAMDLTRENVAREVAAFRSSEPDGAVRYPLDADSDEEAPVVQNAARTQYVPDPLARIMRDRLSQLGRTSADTSAASADLPLICHPKCIETGCTRGGSFGMVTCAACDGYLHRSCGTLIDEDD 1054
            + QE+++ + VSP+    W INDGE  PSHTW  P+SA  M A  ADA +   ++P LFTRK  Y+LFFSGG  GR ++S   WDY DREF E++VD+AKVCSH+R +++GAMD+ RE + R++A    + P G V +P+DADSD         + +           R +  ++GRT+ADTS+AS +LPLI  PKC+E GCT+ G+  MV C  CDG LHRSCG    E+D
Sbjct:  481 FKQEHLRGISVSPVQLISWYINDGEGMPSHTWICPTSAFAMEAARADAYFTALMSPSLFTRKDAYLLFFSGGQGGRVSSSFAKWDYQDREFSEMTVDQAKVCSHDRQELEGAMDIARERIMRDIAESHRA-PAGVVNFPVDADSDA-------GSDSDVAXXXXXXXARRQWDRIGRTAADTSSASEELPLIICPKCVEPGCTKAGNIAMVACNLCDGDLHRSCGVRGGEED 704
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BLAST of mRNA_C-linearis_contig10.548.1 vs. uniprot
Match: D7G8U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U7_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 3.350e-53
Identity = 109/256 (42.58%), Postives = 146/256 (57.03%), Query Frame = 2 
Query:  359 YTQENMKALPVSPLLATQWLINDGEYKPSHTWSIPSSASGMVAEAADAQWVCELTPRLFTRKHTYVLFFSGGYNGRTTTSHRFWDYMDREFEELSVDEAKVCSHNRLQVQGAMDLTRENVAREVAAFRSSEPDGAVRYPLDADSDEEAPVVQNAARTQYVPDPLARIMRDRLSQLGRTSADTSAASADLPLICHPKCIETGCTRGGSFGMVTCAACDGYLHRSCGTL----IDEDDDDCTDRQCNKCSSAGKGKGR 1114
            + QE+++ + VSPL    W+I D +  PS +W  PSSA  M A  ADA  +    P LF RKH Y+LFF+GG   R  TSH  WD  DREF +++VD+AKVCSH+ L+++GAMD  RE   REVA  R   P G   +    DSD +A    +    +  P P +R +    + +GRTS D S A+  LPLI  PKCIE GCT  G+ GM++C  C G LHR CG       D++ D    ++C  C+   +GK R
Sbjct:  132 FKQEHLRGIFVSPLQMVTWIIQDQQAVPSSSWICPSSAFPMDAARADAFGIALFCPSLFIRKHAYLLFFAGGQGDRIITSHEDWDTQDREFADMTVDQAKVCSHDHLELEGAMDAARERAVREVANARRYLP-GVANFGFGPDSDSDA---TSDVGARAAPPPRSRRV---WAGIGRTSNDFSEANEPLPLIVSPKCIEPGCTNAGNMGMISCGRCHGDLHRGCGVSGGGNHDDECDSFVGQRCTPCAYPRRGKKR 380
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BLAST of mRNA_C-linearis_contig10.548.1 vs. uniprot
Match: D8LFC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC4_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 3.220e-26
Identity = 68/166 (40.96%), Postives = 98/166 (59.04%), Query Frame = 2 
Query:  638 LSVDEAKVCSHNRLQVQGAMDLTRENVAREVAAFRSSEPDGAVRYPL--DADSDEEAPVVQNAARTQYVPDPLARIMRDRLSQLGRTSADTSAASADLPLICHPKCIETGCTRGGSFGMVTCAACDGYLHRSCGTL-----IDEDDDDCTDRQCNKCSSAGKGKGR 1114
            +S   AK CSH+RL ++G MD  RE + R++AA R + P G V +P+  D+D++++A    ++  T+  P P A     R   LGR  ADTSAASA+LP+I  P CIE  C   G+  MV+C  C+G +HR CG L      D + +D    +C+ C++A KGK R
Sbjct:  139 ISPSRAKACSHSRLTLEGEMDAAREKIVRDLAAARGA-PSGVVNFPVGPDSDNEDDAGHRNSSDNTRSTPRPTAL----RHGDLGRAEADTSAASANLPVIYCPACIEPECNMSGNMSMVSCNICNGNIHRFCGVLGGTRNDDGETNDFEGTRCSPCAAANKGKKR 299
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BLAST of mRNA_C-linearis_contig10.548.1 vs. uniprot
Match: D7G6N0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N0_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 3.250e-22
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 2 
Query:  350 AFSYTQENMKALPVSPLLATQWLINDGEYKPSHTWSIPSSASGMVAEAADAQWVCELTPRLFTRKHTYVLFFSGGYNGRTTTSHRFWDYMDREFEELSVDEAK 658
            +F  ++   + + VSP+    W INDGE  PSHTW  P+SA  M A  ADA +   ++P LFTRK  Y+LFFSGG  GR ++S   WDY DREF E++VD+AK
Sbjct:  210 SFDLSRSTPRGISVSPVQLISWDINDGEGMPSHTWICPTSAFAMEAARADAYFTALISPSLFTRKDAYLLFFSGGQGGRVSSSFEKWDYQDREFSEMTVDQAK 312
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BLAST of mRNA_C-linearis_contig10.548.1 vs. uniprot
Match: A0A6H5JMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMG5_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.210e-11
Identity = 58/156 (37.18%), Postives = 68/156 (43.59%), Query Frame = 2 
Query:  389 VSPLLATQWLINDGEYKPSHTWSIPSSASGMVAEAADAQWVCELTPRLFTRKHTYVLFFSGGYNGRTTTSHRFWDYMDREFEELSVDEAKVCSHNRLQVQGAMDLTRENVAREVAAFRSSEPDGAVRYPLDADSDEEAPVVQNAARTQYVPDPLAR 856
            VS L    W I  G   PS T   PS    M    ADA  +  +TP LF RKH Y LFFSGG                 EFE ++ D+AK CSH R+ ++G +D  R   A E  A R S   GAV       SD E    + A      PD  AR
Sbjct:  162 VSILQLMTWYIQPGLGMPSPTCVTPSGGWPMCPMRADAYMIALMTPELFPRKHCYSLFFSGGAG---------------EFEGMTHDQAKECSHKRMLLEGRLDQARAKAALEKVAARLST--GAVPGLCQDSSDSEG---EQAVEQSRRPDQPAR 297
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FPH8_ECTSI2.020e-5947.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8U7_ECTSI3.350e-5342.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFC4_ECTSI3.220e-2640.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6N0_ECTSI3.250e-2249.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMG5_9PHAE2.210e-1137.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2231330..2233586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2257
Cds size750
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.548.1prot_C-linearis_contig10.548.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2231703..2232452 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927340.3700953-UTR-C-linearis_contig10:2231329..22317021622927340.3700953-UTR-C-linearis_contig10:2231329..2231702Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2231330..2231702 +
1690879637.5536807-UTR-C-linearis_contig10:2231329..22317021690879637.5536807-UTR-C-linearis_contig10:2231329..2231702Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2231330..2231702 +
1622927340.3898978-UTR-C-linearis_contig10:2232452..22335861622927340.3898978-UTR-C-linearis_contig10:2232452..2233586Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2232453..2233586 +
1690879637.5718288-UTR-C-linearis_contig10:2232452..22335861690879637.5718288-UTR-C-linearis_contig10:2232452..2233586Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2232453..2233586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927340.380525-CDS-C-linearis_contig10:2231702..22324521622927340.380525-CDS-C-linearis_contig10:2231702..2232452Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2231703..2232452 +
1690879637.5627644-CDS-C-linearis_contig10:2231702..22324521690879637.5627644-CDS-C-linearis_contig10:2231702..2232452Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2231703..2232452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.548.1

>prot_C-linearis_contig10.548.1 ID=prot_C-linearis_contig10.548.1|Name=mRNA_C-linearis_contig10.548.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=250bp
MKALPVSPLLATQWLINDGEYKPSHTWSIPSSASGMVAEAADAQWVCELT
PRLFTRKHTYVLFFSGGYNGRTTTSHRFWDYMDREFEELSVDEAKVCSHN
RLQVQGAMDLTRENVAREVAAFRSSEPDGAVRYPLDADSDEEAPVVQNAA
RTQYVPDPLARIMRDRLSQLGRTSADTSAASADLPLICHPKCIETGCTRG
GSFGMVTCAACDGYLHRSCGTLIDEDDDDCTDRQCNKCSSAGKGKGRMA*
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mRNA from alignment at C-linearis_contig10:2231330..2233586+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.548.1 ID=mRNA_C-linearis_contig10.548.1|Name=mRNA_C-linearis_contig10.548.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2257bp|location=Sequence derived from alignment at C-linearis_contig10:2231330..2233586+ (Chordaria linearis ClinC8C monoicous)
TATAGCTCATCGTCTGCTTGCAGCGTCAGACTTAATATTTATTCGTCCTT
TCAGTTTCTTCCAAGGTGTTTCTTTCTTGTCACATACCAAGTTGATCTAT
TTGCCTGTTGTGTTTCTTTGCCCCCCGCCATCCCGGACTTGACGCTGCCT
CTTGTTTTTCACATACCCATCTCACCCTACCTTCACGACATAATTTGTTT
TGTTCATTCTCGTGTTATTTGAGTCCCCTGCCCGCGGGTAATCTGCGTGA
CTAGATGCAAGAGACTGATACGCTGCTGGATCCGGACATGACAGTTATGA
ATTGCACGTTTGACGTCATATCCCTGTCTTCGTCCTTCACTACCTCGGCG
CTTTTTCCTATACGCAGGAGAACATGAAAGCACTTCCTGTCTCCCCGCTC
CTCGCGACCCAGTGGCTGATCAACGACGGGGAGTACAAACCGTCGCACAC
GTGGAGTATTCCGTCCAGCGCGAGCGGCATGGTCGCGGAAGCCGCCGACG
CGCAGTGGGTCTGCGAGCTCACGCCGCGGCTCTTCACCCGGAAGCACACG
TACGTGTTGTTCTTCAGCGGCGGGTACAACGGCCGCACGACGACGTCCCA
CCGCTTCTGGGATTACATGGACCGGGAGTTCGAGGAGTTGTCGGTCGATG
AGGCGAAGGTGTGCTCCCACAACCGTTTGCAAGTGCAAGGAGCGATGGAT
CTCACTCGAGAGAACGTCGCTCGGGAAGTCGCTGCTTTCCGATCCTCCGA
GCCCGATGGCGCGGTCCGCTACCCCCTCGACGCCGACAGCGACGAGGAAG
CACCGGTGGTTCAGAACGCTGCCCGAACCCAGTATGTTCCCGACCCCTTG
GCCCGCATCATGAGAGACCGCCTTTCGCAGCTCGGCCGGACTTCTGCGGA
CACCTCCGCCGCTTCCGCAGACCTGCCACTTATCTGCCACCCGAAGTGCA
TCGAGACTGGATGCACCCGCGGAGGTTCGTTCGGGATGGTGACGTGCGCT
GCCTGCGACGGTTACCTGCACCGCAGCTGCGGCACGCTGATTGATGAAGA
TGACGATGACTGCACGGACAGGCAGTGCAACAAGTGTTCTTCTGCCGGCA
AAGGAAAGGGCAGGATGGCCTAGGCTAATACAGAGCGCTTCTTGCGCGTC
GTTTCATTCTGCCATGTTTTTTTACTATTTACTTCTTATGTGACCGTTGT
CAACTTTGCTGCAGCCTTCTTTGCCGGCGGTAATAGTGCGGGGTGGATGG
GTGGATTCTTCTAGTGATTGCGTCGTGACATACGTAAGTCCATATTGGTT
CATGACGTCTTTCCCCCCCATGAACATTTGTTTTTCATGTTCGCTGCATT
TTCATGCAATCATCTGCCTTCTTCTTTGCCAAAAGTCTCTGATGCGGGGT
GATTTGCTGGATCTTTGGAGTTCGTCGTGCCATCAGTTCGTACATGAGGA
ATGTGTCATGACGATTCTCACGTTTCCCCCCCATGTTTTCGTCTTCATGA
TCTCTCGAAACCTGTATGCAGTTTGTTGCCTTCTTCCTTGCTGATAGTCG
CCGCCGCCTGGTTTTACGTATGCTTCACACGGTTGTTTTCGTGCATTTTC
AGGCAGTCCACCGATTTGTTCTTGGCCAACTGTATCTGCTGCGGGGTTGT
TCATGTACGTGCATCTGGAGACATGTCGACAAGTGTCACGCAGTTTCCTG
CCTTCTCCTTTGCCAACCGTCTCTGTTGCGGGATTTCATATGTAAATATG
CATACGTTATACACGGCTGGTTTTGCTCTTCTTCTAAGATTTTCAGTGCA
CTTTTATGCAGTCTTCTGCCTGTCCGTTGTATATGTAAGTAATCAGGTTG
TTATGTTTACCTCCTCCGCGTTCTACACTGCTTCTCACTTTTCGCGCATT
TTCGACTGCCGTCTCCTGCCTCTGCTTTTACTGAAGTTAGTAAGTGTAGG
TGCTGCACAGCCGTTTTTTTCTCGTTTTTAAGAAGCCTTCATGCATGTTG
CTGCCGATTGCGTCGAAGCTATTTCTTCAGTAACATGTCCTTATGTTCAC
CACCGATTCCTTTCACGTGGGGTGGCGCCGTCGCGCATTCGTGCCCTCCT
CCTTGTTGTTGTATTATGTATGTTTCTTCCTTTGTCTTGGGGGGGTTCTG
CTTCAACGTCGTATAATACGAACGTACCTCTTGTCTTGGTTGTTGTGATC
GGCGAAGGGTTGTTGGTCGTAACATGGGCGACGTCGTGCCCTAACGAAGA
GTACAAA
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Coding sequence (CDS) from alignment at C-linearis_contig10:2231330..2233586+

>mRNA_C-linearis_contig10.548.1 ID=mRNA_C-linearis_contig10.548.1|Name=mRNA_C-linearis_contig10.548.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1500bp|location=Sequence derived from alignment at C-linearis_contig10:2231330..2233586+ (Chordaria linearis ClinC8C monoicous)
ATGAAAGCACTTCCTGTCTCCCCGCTCCTCGCGACCCAGTGGCTGATCAA
CGACGGGGAGTACAAACCGTCGCACACGTGGAGTATTCCGTCCAGCGCGA
GCGGCATGGTCGCGGAAGCCGCCGACGCGCAGTGGGTCTGCGAGCTCACG
CCGCGGCTCTTCACCCGGAAGCACACGTACGTGTTGTTCTTCAGCGGCGG
GTACAACGGCCGCACGACGACGTCCCACCGCTTCTGGGATTACATGGACC
GGGAGTTCGAGGAGTTGTCGGTCGATGAGGCGAAGGTGTGCTCCCACAAC
CGTTTGCAAGTGCAAGGAGCGATGGATCTCACTCGAGAGAACGTCGCTCG
GGAAGTCGCTGCTTTCCGATCCTCCGAGCCCGATGGCGCGGTCCGCTACC
CCCTCGACGCCGACAGCGACGAGGAAGCACCGGTGGTTCAGAACGCTGCC
CGAACCCAGTATGTTCCCGACCCCTTGGCCCGCATCATGAGAGACCGCCT
TTCGCAGCTCGGCCGGACTTCTGCGGACACCTCCGCCGCTTCCGCAGACC
TGCCACTTATCTGCCACCCGAAGTGCATCGAGACTGGATGCACCCGCGGA
GGTTCGTTCGGGATGGTGACGTGCGCTGCCTGCGACGGTTACCTGCACCG
CAGCTGCGGCACGCTGATTGATGAAGATGACGATGACTGCACGGACAGGC
AGTGCAACAAGTGTTCTTCTGCCGGCAAAGGAAAGGGCAGGATGGCCTAG
ATGAAAGCACTTCCTGTCTCCCCGCTCCTCGCGACCCAGTGGCTGATCAA
CGACGGGGAGTACAAACCGTCGCACACGTGGAGTATTCCGTCCAGCGCGA
GCGGCATGGTCGCGGAAGCCGCCGACGCGCAGTGGGTCTGCGAGCTCACG
CCGCGGCTCTTCACCCGGAAGCACACGTACGTGTTGTTCTTCAGCGGCGG
GTACAACGGCCGCACGACGACGTCCCACCGCTTCTGGGATTACATGGACC
GGGAGTTCGAGGAGTTGTCGGTCGATGAGGCGAAGGTGTGCTCCCACAAC
CGTTTGCAAGTGCAAGGAGCGATGGATCTCACTCGAGAGAACGTCGCTCG
GGAAGTCGCTGCTTTCCGATCCTCCGAGCCCGATGGCGCGGTCCGCTACC
CCCTCGACGCCGACAGCGACGAGGAAGCACCGGTGGTTCAGAACGCTGCC
CGAACCCAGTATGTTCCCGACCCCTTGGCCCGCATCATGAGAGACCGCCT
TTCGCAGCTCGGCCGGACTTCTGCGGACACCTCCGCCGCTTCCGCAGACC
TGCCACTTATCTGCCACCCGAAGTGCATCGAGACTGGATGCACCCGCGGA
GGTTCGTTCGGGATGGTGACGTGCGCTGCCTGCGACGGTTACCTGCACCG
CAGCTGCGGCACGCTGATTGATGAAGATGACGATGACTGCACGGACAGGC
AGTGCAACAAGTGTTCTTCTGCCGGCAAAGGAAAGGGCAGGATGGCCTAG
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