mRNA_C-linearis_contig10.534.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.534.1
Unique NamemRNA_C-linearis_contig10.534.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.534.1 vs. uniprot
Match: D7FZW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW0_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 6.950e-46
Identity = 88/111 (79.28%), Postives = 95/111 (85.59%), Query Frame = 1 
Query:   10 GGSAKKRGRGGWKKDYTVIASVESKAGEAAA--AAAGWFVNGDARYACYEELPADMRPHVGDVLAFKTLSLNEETWTPELSSYRTAEVSAFDTASGMVRLFPVFLEDSDRE 336
            GGSAKKRGRGGWKKDY VIASVESKAGEAAA  AAAG   NGDARY  YEELP DMRP V DVLAFKTLSLNEETWTPELS YRTAEV+AFDT+SG+VRL P  +ED +++
Sbjct:  131 GGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENGDARYVVYEELPTDMRPQVCDVLAFKTLSLNEETWTPELSPYRTAEVTAFDTSSGLVRLLPASIEDDNKD 241
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BLAST of mRNA_C-linearis_contig10.534.1 vs. uniprot
Match: A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 9.500e-42
Identity = 86/114 (75.44%), Postives = 91/114 (79.82%), Query Frame = 1 
Query:   10 GGSAKKRGRGGWKKDYTVIASVESKAGEAAA--AAAGWFVNGDARYACYEELPADMRPHVGDVLAFKTLSLNEETWTPELSSYRTAEVSAFDTASGMVRLFPVFLEDSDREANG 345
            GGSAKKRGRGGWKKDY VIASVESKAGEAAA  AAAG   N DARY  YEELP DMRP V DVLAFKTLSLNEETWTPELS YR AEV AFD +SG+VRL P   ED +++  G
Sbjct:  592 GGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENADARYVGYEELPTDMRPQVRDVLAFKTLSLNEETWTPELSPYRMAEVIAFDASSGLVRLRPASTEDDNKDGGG 705
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZW0_ECTSI6.950e-4679.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4H0_9PHAE9.500e-4275.44Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2023139..2024932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_003890.1
Exons3
Model size465
Cds size462
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.534.1prot_C-linearis_contig10.534.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2023141..2024932 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927338.9512005-CDS-C-linearis_contig10:2023140..20233381622927338.9512005-CDS-C-linearis_contig10:2023140..2023338Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2023141..2023338 -
1690879636.2838168-CDS-C-linearis_contig10:2023140..20233381690879636.2838168-CDS-C-linearis_contig10:2023140..2023338Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2023141..2023338 -
1622927338.9619472-CDS-C-linearis_contig10:2024212..20243391622927338.9619472-CDS-C-linearis_contig10:2024212..2024339Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2024213..2024339 -
1690879636.2932203-CDS-C-linearis_contig10:2024212..20243391690879636.2932203-CDS-C-linearis_contig10:2024212..2024339Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2024213..2024339 -
1622927338.9698553-CDS-C-linearis_contig10:2024795..20249321622927338.9698553-CDS-C-linearis_contig10:2024795..2024932Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2024796..2024932 -
1690879636.3022532-CDS-C-linearis_contig10:2024795..20249321690879636.3022532-CDS-C-linearis_contig10:2024795..2024932Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2024796..2024932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.534.1

>prot_C-linearis_contig10.534.1 ID=prot_C-linearis_contig10.534.1|Name=mRNA_C-linearis_contig10.534.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=154bp
GDGGGSAKKRGRGGWKKDYTVIASVESKAGEAAAAAAGWFVNGDARYACY
EELPADMRPHVGDVLAFKTLSLNEETWTPELSSYRTAEVSAFDTASGMVR
LFPVFLEDSDREANGGGGGDGAAAAGPGHQQQDRHQQEEGGFTSAAPSAH
AGEG
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mRNA from alignment at C-linearis_contig10:2023139..2024932-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.534.1 ID=mRNA_C-linearis_contig10.534.1|Name=mRNA_C-linearis_contig10.534.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1794bp|location=Sequence derived from alignment at C-linearis_contig10:2023139..2024932- (Chordaria linearis ClinC8C monoicous)
GGGGATGGCGGTGGGAGCGCGAAGAAGAGGGGCCGGGGAGGGTGGAAGAA
AGACTACACTGTTATTGCGTCGGTGGAGAGCAAGGCCGGGGAGGCCGCGG
CGGCTGCCGCTGGGTGGTTTGTGAACGGCGATGCGCGGTGCGTTTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGCCGTTGTTGACGATGATGAGGCCCTT
GGGTCTGTTGCTGTTATTTAGTGCAGGGTTACGCTGTTGCTGTTTTTGCT
TCTGCTGCCGCCGCCGCTGTTTCTGCTGTCGTGGTTGGGGATAATGAGGC
TGTCGGTGCTCCTATCGTTGGGTGTGTTGGGTACTTGTGCGGTGTTGTTG
ACTTTAAAGCTATTCTAGTGTCAACCCGTCCGTATTCTTGCTTACTTTTT
GCTGGGTTTACGGACAATTATCATGTGCCCGCACAAAGGAGCCTCAATGA
AGAGGTTGAACCACCTCTCTCTCTCTCTCTCTCTCTCGTCGCCGTTTGAT
CGTGCCTCTTTTGACGTGCCTCCTCCTTCCCTTCTCCCGTCTTCTCTCGT
GGTGTCGTCGTTGATGTTGTGGCTGCTTCTGTCCTTGGGGCAGCTATGCC
TGCTACGAAGAGCTCCCCGCCGACATGCGCCCGCACGTAGGGGACGTGCT
CGCCTTCAAGACCCTGTCCCTCAACGAGGAGACGTGGACGCCCGAGCTCT
CCTCCTATCGGACAGCAGAGGTGCGGTACAAGTTTCAAGAGTGTGTTGAG
CGTTTTTGTTACTGTGCGTGTTTGACCTCCTGATTCGCGCTCGGTTTTCG
CTGGCTGTGCGCTGCGCCATATGCTGTGCTGTGCCCTGCTGTGCTGGTTC
CGTTGCCATGGCGCAGCGCCGCTTTTGTACGCCTTTTCGGACATGCCTGG
TCGTTTTTTGTTTTTCAGCGACAATTGGTAAACTTTTATTGATGGTTCGG
TGCACTGCTGTTGGGTGCAATATGTTGTCACCGGGGTTGCTGTTTGGCAG
TTGCACGTACATGCCCACCGTATGCGCATGGTTCGTTCTTTCTGTATTTT
CGTCTTGCTGTCTGCTGATTACGTTCCAGCCGAGCAGGTTGGTAAACGTG
GCCCTTGTAGAAATGTGCGGGACAGCAGCCTTTTGGTTTTGGTTTTGGTT
TTCACGTGGTGTGTTTAGCGTTTGCCTTGTTTTGCTACCGACCGCAGTGA
GCCCGTTTTCTACTTTTTGACGACAGCTCTAGAAAATGACCTAACTTTTG
TGACCAAGATCTCGTGCCCCGGAGGAACAAAACCCTTGATCGGGTTTCTG
CAGCCATCAAGAACGGCACACTTTCAAGTCCAACTGATGTTTGCGAACGC
ACGTTTCCAGATATCGGGGAACGGAATTTTGCTGTCTCAACGGAGTACCG
TGTTCTAGAACCATTCGCCGCGCCTGATAAGCCACATGCCCTATTTGCTC
GTGCCCCTCGAACAACATACAACCTCACCCGTAAGTCCTGAATAAACTTT
AACCTCCCCTCCCTCCATGTTTATCTGTACAATATCGCTCCCTTGTACCC
TCTCTGCCCCGCGTTGAACCGGCAACGTTATGCTGATCGTGCAGGTGTCC
GCCTTCGACACGGCTTCCGGCATGGTGCGTTTATTCCCGGTGTTCCTCGA
GGACAGCGACCGCGAAGCCAATGGCGGCGGCGGCGGCGATGGCGCTGCTG
CCGCAGGGCCCGGTCACCAGCAGCAAGACCGCCACCAGCAGGAAGAAGGA
GGTTTTACCAGCGCTGCGCCTAGCGCACACGCCGGGGAAGGGGG
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Coding sequence (CDS) from alignment at C-linearis_contig10:2023139..2024932-

>mRNA_C-linearis_contig10.534.1 ID=mRNA_C-linearis_contig10.534.1|Name=mRNA_C-linearis_contig10.534.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at C-linearis_contig10:2023139..2024932- (Chordaria linearis ClinC8C monoicous)
GGGGATGGCGGTGGGAGCGCGAAGAAGAGGGGCCGGGGAGGGTGGAAGAA
AGACTACACTGTTATTGCGTCGGTGGAGAGCAAGGCCGGGGAGGCCGCGG
CGGCTGCCGCTGGGTGGTTTGTGAACGGCGATGCGCGGGGGATGGCGGTG
GGAGCGCGAAGAAGAGGGGCCGGGGAGGGTGGAAGAAAGACTACACTGTT
ATTGCGTCGGTGGAGAGCAAGGCCGGGGAGGCCGCGGCGGCTGCCGCTGG
GTGGTTTGTGAACGGCGATGCGCGCTATGCCTGCTACGAAGAGCTCCCCG
CCGACATGCGCCCGCACGTAGGGGACGTGCTCGCCTTCAAGACCCTGTCC
CTCAACGAGGAGACGTGGACGCCCGAGCTCTCCTCCTATCGGACAGCAGA
GCTATGCCTGCTACGAAGAGCTCCCCGCCGACATGCGCCCGCACGTAGGG
GACGTGCTCGCCTTCAAGACCCTGTCCCTCAACGAGGAGACGTGGACGCC
CGAGCTCTCCTCCTATCGGACAGCAGAGGTGTCCGCCTTCGACACGGCTT
CCGGCATGGTGCGTTTATTCCCGGTGTTCCTCGAGGACAGCGACCGCGAA
GCCAATGGCGGCGGCGGCGGCGATGGCGCTGCTGCCGCAGGGCCCGGTCA
CCAGCAGCAAGACCGCCACCAGCAGGAAGAAGGAGGTTTTACCAGCGCTG
CGCCTAGCGCACACGCCGGGGAAGGGGTGTCCGCCTTCGACACGGCTTCC
GGCATGGTGCGTTTATTCCCGGTGTTCCTCGAGGACAGCGACCGCGAAGC
CAATGGCGGCGGCGGCGGCGATGGCGCTGCTGCCGCAGGGCCCGGTCACC
AGCAGCAAGACCGCCACCAGCAGGAAGAAGGAGGTTTTACCAGCGCTGCG
CCTAGCGCACACGCCGGGGAAGGG
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