mRNA_C-linearis_contig10.512.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.512.1
Unique NamemRNA_C-linearis_contig10.512.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 2.680e-90
Identity = 171/288 (59.38%), Postives = 197/288 (68.40%), Query Frame = 2
Query:  320 MPANLGDTTAEAAGLALKIGSAAADAMSFVADLGEELPLVQPALKTLRDIGEKVQTTKSNPEKLAALHQRCAHIAACFIVKCRQGSSELDVAPLEDCVKAVEKLVSRCSRRSTLSRVLKASSDKDEILRPKERIKELEGGLSLAGIAIL---------------------MGKWQAAQQRDTLANQEAVLGHFPKPPAKLASVPKGTPPRKSWHVERRQVTESVFGALAGDGEPRLVGLVGNSGSGKTTAALEIFRSAGVREAFSNGIVWFTFGEGVKGHLPSLMLQL 1120
            M A + D T E A +A K+GSAAAD + FVADLGEELPL+QP L+TLR I EKV+T K NPE L  LHQRC +I ACFIVKCR G +ELDVAPLEDCV AVEK V R  +R  +SRVLKA  DK +I++ KER+++LEG LSLAGIA L                     MGK Q     + LA  E +L   PKPPAK+A+VPKGTP  KSWHVERR VTE+VF AL  DG P LVGLVG+SG+GKTTAA  I  S  VRE FS+GIVW    EGV  +LP LMLQL
Sbjct:    1 MAAYVADATGEVAKIASKMGSAAADVIQFVADLGEELPLLQPVLRTLRIIREKVETVKRNPEDLTVLHQRCTYITACFIVKCRHGYTELDVAPLEDCVNAVEKFVERYRKRGKISRVLKAVGDKGDIVQLKERLRDLEGDLSLAGIASLAKYLIADPKPCSPVAFAFQERMGKKQEGNHEELLAKTETILRQLPKPPAKVANVPKGTPTHKSWHVERRNVTETVFQALDADGGPHLVGLVGDSGAGKTTAASAIVSSIVVRETFSDGIVWLPVNEGVHDNLPCLMLQL 288          
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Match: D7FZY7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY7_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 3.590e-72
Identity = 148/288 (51.39%), Postives = 187/288 (64.93%), Query Frame = 2
Query:  320 MPANLGDTTAEAAGLALKIGSAAADAMSFVADLGEELPL-------VQPALKTLRDIGEKVQTTKSNPEKLAALHQRCAHIAACFIVKCRQGS-SELDVAPLEDCVKAVEKLVSRCSRRSTLSRVLKASSDKDEILRPKERIKELEGGLSLAGIAILMGKW-------------QAAQQRDTLANQEAVLGHFPKPPAKLASVPKGTPPRKSWHVERRQVTESVFGALAGDGEPRLVGLVGNSGSGKTTAALEIFRSAGVREAFSNGIVWFTFGEGVKGHLPSLMLQL 1120
            M A      AE   L LK+GSA  D+++F+A+LGE+LP        ++P LKTL  I E V+  ++N E+L  L++RC ++ AC +VK RQ S SE+D+ P+E+C++A  +LV RC  R  ++RVL ASSDK+EI R K  I++LE  LSLAG+AIL GK              QAA Q   LAN E+++    K PAKLA +PK TP RKSWHVER  V E VF AL   G P LVGLVG+SGSGKTTAA EI RS  VR+AFS+G+VW T   G K  LPSLMLQL
Sbjct:    1 MAAKSSGAAAEVTKLGLKMGSATVDSITFMAELGEDLPFGEPVLPHLRPVLKTLTAIRETVENVQNNQEELQTLYRRCVYLTACVVVKSRQSSCSEMDLTPVEECLEAAGELVERCGGRGKMTRVLNASSDKEEIARMKANIRDLEADLSLAGVAILEGKTSDLTAMVERMGTNQAATQEMILANTESIIDRLSKTPAKLAKIPKATPIRKSWHVERLYVMERVFEALTAVGGPHLVGLVGDSGSGKTTAASEIVRSNEVRQAFSDGVVWLTVNHGAKDRLPSLMLQL 288          
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 1.070e-70
Identity = 144/267 (53.93%), Postives = 174/267 (65.17%), Query Frame = 2
Query:  320 MPANLGDTTAEAAGLALKIGSAAADAMSFVADLGEELPLVQPALKTLRDIGEKVQTTKSNPEKLAALHQRCAHIAACFIVKCRQGSSELDVAPLEDCVKAVEKLVSRCSRRSTLSRVLKASSDKDEILRPKERIKELEGGLSLAGIAILMGKWQAAQQRDTLANQEAVLGHFPKPPAKLASVPKGTPPRKSWHVERRQVTESVFGALAGDGEPRLVGLVGNSGSGKTTAALEIFRSAGVREAFSNGIVWFTFGEGVKGHLPSLMLQL 1120
            M A++ D+ AEAA LAL+IGS  +DA+S   DLGEELP+++P  KTL+ I   V+T K+N E+LAAL QRC +I ACF+VKCR   SE+DVAPL+DCV+A +    RCSRR  +SRV+KA SDK EI      +  L   L LAGIA+L GK      + TL   +  L   P+   KLA+VP G P RKSWHVERR    +V  AL G     +V L G SGSGKTT A EI RS  VREAFS+GIVW    EG K  LPSLMLQL
Sbjct:    1 MVADISDSAAEAARLALEIGSTISDAVSCAVDLGEELPVIKPVFKTLKAIRTTVETVKNNREELAALEQRCTYITACFVVKCRLIESEVDVAPLKDCVEAAKNFAERCSRRGKVSRVIKAFSDKSEIAGLNSSVDRLTTDLGLAGIAVLEGK--VDDMKKTLDRIDQRLESLPRSFGKLAAVPMGAPVRKSWHVERRHAMATVLDALNGSDRACVVALAGYSGSGKTTVAAEIVRSTEVREAFSDGIVWLPVNEGAKKRLPSLMLQL 265          
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Match: D7G5K4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K4_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 1.560e-69
Identity = 142/285 (49.82%), Postives = 174/285 (61.05%), Query Frame = 2
Query:  320 MPANLGDTTAEAAGLALKIGSAAADAMSFV-ADLGEELPLVQPALKTLRDIGEKVQTTKSNPEKLAALHQRCAHIAACFIVKCRQ---GSSELDVAPLEDCVKAVEKLVSRCSRRSTLSRVLKASSDKDEILRPKERIKELEGGLSLAGIAILMGKW--------------QAAQQRDTLANQEAVLGHFPKPPAKLASVPKGTPPRKSWHVERRQVTESVFGALAGDGEPRLVGLVGNSGSGKTTAALEIFRSAGVREAFSNGIVWFTFGEGVKGHLPSLMLQL 1120
            M   L D   EAA LALK+GS A D +SFV    G ELP+V   LKTL  + E V+T + N ++LAAL +RC ++ A  IVK RQ     S LDV PL+DCV   EK   RC +R     ++KA S KDE+     RI  L G L LAGIA ++G+               QAA Q++ LANQE V+   PKPP K A +P+GTP RKSWHVERR V ++V  AL G+  P LVGLVG+SG+GKTTAA E+  S  VRE+FS+GIVW     G    LPSLMLQL
Sbjct:    1 MVTTLSDAAVEAANLALKMGSTAVDMISFVHRGDGGELPVVGTVLKTLTAMRETVETVQQNRDELAALEKRCTYMTASVIVKFRQIPQPGSGLDVTPLKDCVVVAEKFAERCKKRRMRWEIVKAFSVKDELATLNARIDRLVGDLGLAGIATVLGEVADLKGMMLEQMVSDQAAAQKELLANQEIVIDRLPKPPTKKADIPQGTPMRKSWHVERRHVMDTVVEALTGEAGPHLVGLVGDSGAGKTTAASELVGSNVVRESFSDGIVWLAVNYGANKRLPSLMLQL 285          
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Match: A0A6H5KLK9_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLK9_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 7.680e-63
Identity = 129/261 (49.43%), Postives = 163/261 (62.45%), Query Frame = 2
Query:  377 GSAAADAMSFVADLGEELPLVQPALKTLRDIGEKVQTTKSNPEKLAALHQRCAHIAACFIVKCRQGSSELDVAPLEDCVKAVEKLVSRCSRRSTLSRVLKASSDKDEILRPKERIKELEGGLSLAGIAILMGKW-------------QAAQQRDTLANQEAVLGHFPKPPAKLASVPKGTPPRKSWHVERRQVTESVFGALAGDGEPRLVGLVGNSGSGKTTAALEIFRSAGVREAFSNGIVWFTFGEGVKGHLPSLMLQL 1120
            G+ A+D ++F+ +  + LPL++P LKTL+ +              AAL+QRC +I  C IV+CR+GSS L   PL +CV AV   V RCSRR  LSRVLKA+ DK+EI   K+R+++LEG L LAGIA + GK              QA     TLAN + +       P  LA+VP GTP RKSWHVERR V  +V  AL G+G PRLVGLVG+SGSGKTTAA EI RS  VREAFS+GIVW +  +G    L +LM+ L
Sbjct:    6 GTMASDVLAFLTEASDGLPLIEPVLKTLKAVXXXXXXXXXXXXXXAALYQRCTYITGCVIVRCRKGSSGLKATPLMECVNAVGAFVERCSRRGMLSRVLKATDDKEEIAGLKQRLEDLEGDLRLAGIATVGGKVEDLKALLEHVDTKQALSHSQTLANHDIMFARVGISPETLATVPAGTPARKSWHVERRHVMRAVCDALPGEGGPRLVGLVGDSGSGKTTAAAEIVRSTEVREAFSDGIVWLSVNDGATERLRALMMHL 266          
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Match: A0A6H5KJ30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ30_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 5.020e-51
Identity = 130/281 (46.26%), Postives = 156/281 (55.52%), Query Frame = 2
Query:  320 MPANLGDTTAEAAGLALKIGSAAADAMSFVADLGEELPLVQPALKTLRDIGEKVQTTKSNPEKLAALHQRCAHIAACFIVKCRQGS-SELDVAPLEDCVKAVEKLVSRCSRRSTLSRVLKASSDKDEILRPKERIKELEGGLSLAGIAILMGKW-------------QAAQQRDTLANQEAVLGHFPKPPAKLASVPKGTPPRKSWHVERRQVTESVFGALAGDGEPRLVGLVGNSGSGKTTAALEIFRSAGVREAFSNGIVWFTFGEGVKGHLPSLMLQL 1120
            M A      AE   LALK+GSA  D+++FVADL E+LP                     N E+L  L++RC  +  C IVK RQ S SE+DV+P+E+C++A  +LV RC  R  ++RVL ASSDKD+I R K  I++LE  LSLAG+AIL GK              QAA Q   LAN E +     K PAK A +PK TP  KSWHVER  V E VF  L  DG P LVGLVG+SGSGKTTAA EI RS                    +  LPSLMLQL
Sbjct:    1 MAAESSGAAAEVTKLALKMGSATVDSITFVADLCEDLPF-------------------ENQEELQTLYRRCVFLTTCVIVKSRQSSFSEMDVSPVEECLEAAGELVERCGGRGKMTRVLNASSDKDQIARMKANIRDLEANLSLAGVAILEGKTSDLRATVERMAKIQAATQEVILANTEIITDRLSKTPAKPAKIPKSTPIWKSWHVERFDVVERVFEPLTADGGPPLVGLVGDSGSGKTTAASEIVRSN-------------------EDRLPSLMLQL 243          
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Match: D8LFN6_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN6_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 2.200e-45
Identity = 121/279 (43.37%), Postives = 156/279 (55.91%), Query Frame = 2
Query:  350 EAAGLALKIGSAAADAMSFVADLGEELPLVQPALKTLRDIGEKVQTTKSNPEKLAALHQRCAHIAACFIVKCRQ-GSSELDVAPLEDCVKAVEKLVSRCSRRSTLSRVLKASSDKDEILRPKERIKELEGGLSLAGIAILMGKWQAAQQRDTLANQEAVLGHFPKPPA-KLASVPKGTPPRKSWHVERRQVTESVFGALAGDGEPRLVGLVGNSGSGKTTAALEIF-RSAG-----------------VREAFSNGIVWFTFGEGVKG--HLPSLMLQL 1120
            EAA + LK+GS AAD + F  +LG E+P+V   LKTL+ I  + +  +SN E+L AL +RC ++ AC IVK RQ  SSE++VAPLE CV A E  ++RCSRR    R  KASSD DE+L    R+  L G L LAGIA L  K       D  A    V+     P +  +A+VP G P   SWHV R +V ++V+  L+    P++VGLVG SGSGKTT A  I   S G                 VRE F +G+VW   G G      +P+LM QL
Sbjct:   54 EAARVFLKMGSTAADIVMFTEELGGEVPVVGAVLKTLKAIRLRFEAVQSNTERLKALEERCTYVTACVIVKWRQTSSSEMNVAPLESCVNAAEDFIARCSRRGLCGRCTKASSDNDELLTLNSRVDSLTGDLGLAGIASLDAKVD-----DLKAMLAEVIAQNTMPASVPVAAVPNGKPVEHSWHVARDRVVDAVYEHLSCGQTPQVVGLVGRSGSGKTTCAASIVGESTGRRHQNETGDQMLRRLNRVREHFRDGVVWLRVGRGGGSAERVPALMSQL 327          
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Match: A0A6H5J759_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J759_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 4.450e-40
Identity = 100/218 (45.87%), Postives = 127/218 (58.26%), Query Frame = 2
Query:  473 EKVQTTKSNPEKLAALHQRCAHIAACFIVKCRQG--SSELDVAPLEDCVKAVEKLVSRCSRRSTLSRVLKASSDKDEILRPKERIKELEGGLSLAGIAILMGKWQAAQQRDTLANQEAVLGHFPKPPAKLASVPKGTPPRKSWHVERRQVTESVFGALAGDGEPRLVGLVGNSGSGKTTAALEIFRSAGVREAFSNGIVWFTFGEGVKGHLPSLMLQL 1120
            E V+T     ++LAAL +RC ++ AC I K R     S  +V+PLEDCV   EK V R  +R T+ ++++                                  QAA +++ LANQE ++   PKPP K A VP+GTP RKSWHVER  VTE+V  AL G+  PRLVGLVG+SG+GKTTAA E+ RS  VRE+FS+GIVW T   G    LPSLMLQL
Sbjct:    3 ETVETVYQTRDELAALEKRCTYMTACIIAKFRHAHPGSAPNVSPLEDCVMEAEKFVERRKKR-TMEQMVQN---------------------------------QAAARKELLANQEIIIDRLPKPPIKKAYVPQGTPTRKSWHVERH-VTETVVEALTGEAGPRLVGLVGDSGAGKTTAAAELVRSNVVRESFSDGIVWLTVNYGANKRLPSLMLQL 185          
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Match: A0A6H5KMQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ3_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.660e-36
Identity = 81/134 (60.45%), Postives = 96/134 (71.64%), Query Frame = 2
Query:  365 ALKIGSAAADAMSFVADLGEELPLVQPALKTLRDIGEKVQTTKSNPEKLAALHQRCAHIAACFIVKCRQGSSELDVAPLEDCVKAVEKLVSRCSRRSTLSRVLKASSDKDEILRPKERIKELEGGLSLAGIAIL 766
            A ++GSA  DA+SFVA+LGE LPL QP LKTL  I EKV+T  SN E LAAL +RC +I AC IVK R+GSSELDVAPLEDC++A   LV  C RR  L RVLKASSD+ EI     RI+ LE  + LAGI ++
Sbjct:  114 AREVGSAVVDAVSFVAELGEGLPLFQPVLKTLTAIREKVKTVISNREDLAALGERCVYITACVIVKFRKGSSELDVAPLEDCIRAAGVLVEHCGRRGKLLRVLKASSDRGEIAALNTRIRALESDMGLAGITVV 247          
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Match: A0A6H5KYW3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW3_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 6.910e-27
Identity = 70/121 (57.85%), Postives = 79/121 (65.29%), Query Frame = 2
Query:  767 MGKWQAAQQRDTLANQEAVLGHFP---KPPAKLASVPKGTPPRKSWHVERRQVTESVFGALAGDGEPRLVGLVGNSGSGKTTAALEIFRSAGVREAFSNGIVWFTFGEGVKGHLPSLMLQL 1120
            M   QAA Q   L NQ  +L H     K  AKL  VPKGTP RKSW+V+RR V ++VF  LA DG PRLVGLVG SGSGKTT A E  RS  V+EAFS+GI W +  +G K  L SLMLQL
Sbjct:    1 MANKQAASQERILENQSKILDHMDQLSKTQAKLTKVPKGTPARKSWYVKRRHVMDTVFEGLASDGGPRLVGLVGGSGSGKTTVASESVRSTEVQEAFSDGIAWLSVNDGAKERLSSLMLQL 121          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KRK8_9PHAE2.680e-9059.38NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
D7FZY7_ECTSI3.590e-7251.39NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7FZW8_ECTSI1.070e-7053.93NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G5K4_ECTSI1.560e-6949.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLK9_9PHAE7.680e-6349.43NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6H5KJ30_9PHAE5.020e-5146.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFN6_ECTSI2.200e-4543.37NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5J759_9PHAE4.450e-4045.87NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KMQ3_9PHAE1.660e-3660.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYW3_9PHAE6.910e-2757.85NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:1632585..1635100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.5
Seed ortholog evalue2.4e-86
Seed eggNOG ortholog2880.D7FZX2
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons3
Model size1657
Cds size807
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.512.1prot_C-linearis_contig10.512.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 1633116..1634276 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927336.4963162-UTR-C-linearis_contig10:1632584..16331151622927336.4963162-UTR-C-linearis_contig10:1632584..1633115Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1632585..1633115 -
1690879634.318484-UTR-C-linearis_contig10:1632584..16331151690879634.318484-UTR-C-linearis_contig10:1632584..1633115Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1632585..1633115 -
1622927336.5391204-UTR-C-linearis_contig10:1634276..16343941622927336.5391204-UTR-C-linearis_contig10:1634276..1634394Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1634277..1634394 -
1690879634.3541358-UTR-C-linearis_contig10:1634276..16343941690879634.3541358-UTR-C-linearis_contig10:1634276..1634394Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1634277..1634394 -
1622927336.551279-UTR-C-linearis_contig10:1634899..16351001622927336.551279-UTR-C-linearis_contig10:1634899..1635100Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1634900..1635100 -
1690879634.3622527-UTR-C-linearis_contig10:1634899..16351001690879634.3622527-UTR-C-linearis_contig10:1634899..1635100Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1634900..1635100 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927336.512085-CDS-C-linearis_contig10:1633115..16334751622927336.512085-CDS-C-linearis_contig10:1633115..1633475Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1633116..1633475 -
1690879634.3308444-CDS-C-linearis_contig10:1633115..16334751690879634.3308444-CDS-C-linearis_contig10:1633115..1633475Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1633116..1633475 -
1622927336.5274472-CDS-C-linearis_contig10:1633829..16342761622927336.5274472-CDS-C-linearis_contig10:1633829..1634276Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1633830..1634276 -
1690879634.3437307-CDS-C-linearis_contig10:1633829..16342761690879634.3437307-CDS-C-linearis_contig10:1633829..1634276Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1633830..1634276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.512.1

>prot_C-linearis_contig10.512.1 ID=prot_C-linearis_contig10.512.1|Name=mRNA_C-linearis_contig10.512.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=269bp
MPANLGDTTAEAAGLALKIGSAAADAMSFVADLGEELPLVQPALKTLRDI
GEKVQTTKSNPEKLAALHQRCAHIAACFIVKCRQGSSELDVAPLEDCVKA
VEKLVSRCSRRSTLSRVLKASSDKDEILRPKERIKELEGGLSLAGIAILM
GKWQAAQQRDTLANQEAVLGHFPKPPAKLASVPKGTPPRKSWHVERRQVT
ESVFGALAGDGEPRLVGLVGNSGSGKTTAALEIFRSAGVREAFSNGIVWF
TFGEGVKGHLPSLMLQLQ*
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mRNA from alignment at C-linearis_contig10:1632585..1635100-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.512.1 ID=mRNA_C-linearis_contig10.512.1|Name=mRNA_C-linearis_contig10.512.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2516bp|location=Sequence derived from alignment at C-linearis_contig10:1632585..1635100- (Chordaria linearis ClinC8C monoicous)
CCCCATTGCCAATCCTCTGCCGTCCCAGCCCTCCCTCGAAGCGACTCTCT CTTACCAGCACGGACGTCACTGACCATTCCCACCTAAGCCTTCCCAACAT AGCTGCCGTCCCTTGGTCTTCGGCCTACTCGTGCGTGCACCTACAGCTGC CTGCACCTGGTGCTCCGCCCCTGCAACGAGACAACAAGCAATTTAGGGCA GGTGTGACACCAAACGTTATTTCTTTCGAGTGGACTTTGTCGGCAGGAGT GCACAAACAGAGTTCCACTTTTGTCGGTTCGAGCTGGTCAGTCGGATAGT ATGCTGCTACACGCGTGCCACTCCTGTACATCGACTTGGGCAAAGTTCAA GTCCACACCATGCTCCTGGTTCGAGAAAAACATAGGCGAGATTGTGTCCC GCGGCGATATCCCGCTGTCTGAACACCGTTGCTAACGTGCTGCTGTCACA ATCAGTGATATTTGCTTCAGCACTCAGTAGCCCTCGGCGCTGTGCCTCCG AATCGTGCCTCAACCACCCCTCTCTCAATGCCAATACTGACGCTACAAAC AACCGGTCGAGCTGCCCACTGCTACAGTACAGTATCATGAGATTCGCATG TGTCATGTTGAGCAGCTGCCCGTTCCTAGCACAAACGTTTTGGCAGGTTT CTCTCAGTCGTTATTGACAGCACTTCTACACTTCCTTTGTCGCACTTTTG AAGCAGGCTGGGGGATCGTGACGGGGCTCACCAAACGCAACGCCGACCCT CAGTTGCGACATCTACTCCAACTTGCTCTGCAACAACGCATTAATGCAGT GGGTGGAACACCGCATGCGGGAGAATGCCGGCGAACCTCGGTGATACCAC AGCCGAGGCTGCTGGGCTCGCCCTCAAGATAGGCTCGGCCGCCGCGGACG CGATGTCGTTCGTGGCCGACTTGGGCGAGGAGCTGCCGCTGGTGCAGCCG GCGCTGAAGACGCTCAGGGACATTGGCGAGAAGGTGCAGACCACTAAAAG TAACCCGGAGAAGTTGGCAGCGCTGCACCAAAGGTGCGCGCACATCGCGG CATGCTTCATTGTAAAGTGTAGACAAGGTTCCTCGGAGCTCGACGTGGCT CCGCTGGAGGACTGCGTCAAGGCGGTGGAGAAGCTCGTCAGTCGCTGCAG TCGTCGAAGCACTCTGTCGAGGGTCTTGAAGGCCTCCAGTGACAAGGACG AGATTCTGCGACCCAAGGAACGCATCAAGGAGCTGGAAGGCGGTTTGAGT CTGGCGGGCATCGCCATATTGGTGGGTGTTGGAGTAATTTCGGCCGTGTG GTCGCTCTTCCGTTGTAAGCCATCGCCACGTTTCGGGAGTTCAGGGATGG AGTGTAGCGATTCCTCGTAGCACCTTGCTGGCTTTCGGCTCTAGAACCAC CTGTAGGGATTAGCACCTATCTTGTAACGATTGCTGCAGCGCACCATGTT GTAACGGGGGCATTTCTGCGCGTAGAGCCCCTCGGCTGCCGAATATAATC GCTATCCACCGTTAGCTTTTGCCTGCCCCGGTCGGAGGACACACGTGCCC GATGAATGGGCGGTTTACCTTACACCGTACGTCTACCGTTCCCCCCAATC AATGCTGTGTGTTTTGCGGGAGCAGATGGGCAAGTGGCAAGCAGCGCAAC AGCGCGATACCCTGGCGAACCAAGAAGCTGTTCTTGGACACTTCCCAAAG CCGCCGGCTAAGCTGGCCAGCGTTCCCAAGGGCACTCCGCCCCGCAAGAG CTGGCACGTCGAGCGTCGGCAAGTGACGGAATCCGTGTTTGGAGCGCTCG CCGGCGATGGAGAACCGCGTTTGGTGGGACTCGTCGGCAACAGCGGATCG GGCAAGACCACAGCCGCGTTGGAGATCTTCCGGAGTGCCGGGGTGCGTGA GGCATTCTCTAACGGCATCGTGTGGTTCACGTTTGGTGAAGGGGTAAAGG GCCATCTCCCGTCGTTGATGCTTCAGCTACAGTAGCCCGCATGGTACACA AGGATATCGGGGGCAGCGTGGGTCGTTGCCCAGCGGTAGCGGAAGATGGT GTGGCTTGCATCAAGCAATGGATAGAGAAGGGCGTAAGGGGCAAGCCGTT GAAGTGCCTCTTGGTGGCGGACAACGTGTGGGAGATGGGCGGGGAGGCTG GGCGAGGCGGAGGAGTTGTTGAGGCACTGTCCGGTTGTCGTGGAGGCCAA GCTGGGCCGAGGAAGCGCTGGGGTCGCCAACACGCTGAGTGTCCTGGTGC TGTGCGTTCGAGAGGCTGGGCGCCTCGAGGAGGCGGAAACGCTTGCGCGG TGATGTCTCGGGATAAAGGAGGCCAGCCTTGGCCCGGGCCACGAGCAGGT GGCCGGAGCGCTGCACAACCTGGGTGTCTGCGTTCGAGAGGCAGGGAGGG CGGCCGGAGGAGGGCGAAACGTTGAAGCAGCGCGAACTTTGTTCGAGCTG GGAGGGTGCGCGAGAGGCGGGGCGGTTGGAGGAGGCGGAGGGGTTGGAGG AGGCGCTGTCTGGGGA
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Coding sequence (CDS) from alignment at C-linearis_contig10:1632585..1635100-

>mRNA_C-linearis_contig10.512.1 ID=mRNA_C-linearis_contig10.512.1|Name=mRNA_C-linearis_contig10.512.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1614bp|location=Sequence derived from alignment at C-linearis_contig10:1632585..1635100- (Chordaria linearis ClinC8C monoicous)
ATGCCGGCGAACCTCGGTGATACCACAGCCGAGGCTGCTGGGCTCGCCCT
CAAGATAGGCTCGGCCGCCGCGGACGCGATGTCGTTCGTGGCCGACTTGG
GCGAGGAGCTGCCGCTGGTGCAGCCGGCGCTGAAGACGCTCAGGGACATT
GGCGAGAAGGTGCAGACCACTAAAAGTAACCCGGAGAAGTTGGCAGCGCT
GCACCAAAGGTGCGCGCACATCGCGGCATGCTTCATTGTAAAGTGTAGAC
AAGGTTCCTCGGAGCTCGACGTGGCTCCGCTGGAGGACTGCGTCAAGGCG
GTGGAGAAGCTCGTCAGTCGCTGCAGTCGTCGAAGCACTCTGTCGAGGGT
CTTGAAGGCCTCCAGTGACAAGGACGAGATTCTGCGACCCAAGGAACGCA
TCAAGGAGCTGGAAGGCGGTTTGAGTCTGGCGGGCATCGCCATATTGATG
CCGGCGAACCTCGGTGATACCACAGCCGAGGCTGCTGGGCTCGCCCTCAA
GATAGGCTCGGCCGCCGCGGACGCGATGTCGTTCGTGGCCGACTTGGGCG
AGGAGCTGCCGCTGGTGCAGCCGGCGCTGAAGACGCTCAGGGACATTGGC
GAGAAGGTGCAGACCACTAAAAGTAACCCGGAGAAGTTGGCAGCGCTGCA
CCAAAGGTGCGCGCACATCGCGGCATGCTTCATTGTAAAGTGTAGACAAG
GTTCCTCGGAGCTCGACGTGGCTCCGCTGGAGGACTGCGTCAAGGCGGTG
GAGAAGCTCGTCAGTCGCTGCAGTCGTCGAAGCACTCTGTCGAGGGTCTT
GAAGGCCTCCAGTGACAAGGACGAGATTCTGCGACCCAAGGAACGCATCA
AGGAGCTGGAAGGCGGTTTGAGTCTGGCGGGCATCGCCATATTGATGGGC
AAGTGGCAAGCAGCGCAACAGCGCGATACCCTGGCGAACCAAGAAGCTGT
TCTTGGACACTTCCCAAAGCCGCCGGCTAAGCTGGCCAGCGTTCCCAAGG
GCACTCCGCCCCGCAAGAGCTGGCACGTCGAGCGTCGGCAAGTGACGGAA
TCCGTGTTTGGAGCGCTCGCCGGCGATGGAGAACCGCGTTTGGTGGGACT
CGTCGGCAACAGCGGATCGGGCAAGACCACAGCCGCGTTGGAGATCTTCC
GGAGTGCCGGGGTGCGTGAGGCATTCTCTAACGGCATCGTGTGGTTCACG
TTTGGTGAAGGGGTAAAGGGCCATCTCCCGTCGTTGATGCTTCAGCTACA
GTAGATGGGCAAGTGGCAAGCAGCGCAACAGCGCGATACCCTGGCGAACC
AAGAAGCTGTTCTTGGACACTTCCCAAAGCCGCCGGCTAAGCTGGCCAGC
GTTCCCAAGGGCACTCCGCCCCGCAAGAGCTGGCACGTCGAGCGTCGGCA
AGTGACGGAATCCGTGTTTGGAGCGCTCGCCGGCGATGGAGAACCGCGTT
TGGTGGGACTCGTCGGCAACAGCGGATCGGGCAAGACCACAGCCGCGTTG
GAGATCTTCCGGAGTGCCGGGGTGCGTGAGGCATTCTCTAACGGCATCGT
GTGGTTCACGTTTGGTGAAGGGGTAAAGGGCCATCTCCCGTCGTTGATGC
TTCAGCTACAGTAG
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