mRNA_C-linearis_contig10.500.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Match: A0A6H5KYW3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW3_9PHAE) HSP 1 Score: 227 bits (578), Expect = 7.680e-65 Identity = 120/202 (59.41%), Postives = 149/202 (73.76%), Query Frame = 1
Query: 1 RKAILRAGFEDLAVGSEDKRVPRLYLALSVIPDGHEPTVKDAAVLPFDRELSIEDEASVGKVVDILESWTILRPKKGTCQMLDAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLRFHESHVLKGLWRVVERVGGDDWGWDKRRRYSKEFAKVDKSDPS-CMESLQAVADFQEVQEDWKGASTTGQRRLEVEKTELGADH 603
RKAILRAGFEDLA+GS+D+RV RLYL+L+V PDGH TV+DAAVL +DRE EDEASV VVD LE WT+LR ++G +M DAHSI ARE L+DHGYVR+PA++R V IS L+ LR + +VLKGLW VE VGGD GW K R YS +D+ + +++ A+A QE EDW+GASTT +R LE+EK +LGADH
Sbjct: 296 RKAILRAGFEDLAIGSDDERVQRLYLSLAVFPDGHAFTVRDAAVLLYDREPCAEDEASVAVVVDTLERWTVLRSEQGAYRMHDAHSIFARETLMDHGYVRRPAVKRWVSSISCLEVLRSSDPYVLKGLWLAVEGVGGD--GWLKSRAYSAALVGMDRLHSALARQNIIALARLQEAHEDWEGASTTWRRLLEIEKKQLGADH 495
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI) HSP 1 Score: 226 bits (575), Expect = 3.750e-64 Identity = 117/204 (57.35%), Postives = 151/204 (74.02%), Query Frame = 1
Query: 1 RKAILRAGFEDLAVGSEDKRVPRLYLALSVIPDGHEPTVKDAAVLPFDRELSIEDEASVGKVVDILESWTILRPKKGTCQMLDAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLRFHESHVLKGLWRVVERVGGDDWGWDKRRRYSKEFAKVDKSDPSCMESLQAVADFQEVQEDWKGASTTGQRRLEVEKTELGADHPMV 612
RKAIL+ GFEDLA+GS+D+RV RLYL+L+V+PDGH ++KDAAVL +DR S EDEAS G VVD+LE W+I+R +GT +M DAH+ ARE LLD G+VR+PA++R +++SSLD LR + +VLKGLW +ER+GGD WG K R Y K + +SD + +AV FQE QED +GAS + +R LEVEK ELGADHP V
Sbjct: 440 RKAILQGGFEDLAIGSDDERVQRLYLSLAVMPDGHAFSLKDAAVLLYDRSPSTEDEASAGGVVDVLERWSIIRSAQGTYRMHDAHTDFARECLLDRGHVRRPALKRWTRYLSSLDILRSTDRYVLKGLWLAIERLGGDGWG--KTRPYEKALGMMLESDALLRTTAEAVGWFQEAQEDLEGASASWRRLLEVEKRELGADHPFV 641
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE) HSP 1 Score: 224 bits (571), Expect = 1.650e-63 Identity = 120/205 (58.54%), Postives = 152/205 (74.15%), Query Frame = 1
Query: 1 RKAILRAGFEDLAVGSEDKRVPRLYLALSVIPDGHEPTVKDAAVLPFDRELSIEDEASVGKVVDILESWTILRPKKGTCQMLDAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLRFHESHVLKGLWRVVERVGGDDWGWDKRRRYSKEFAKVDKSD-PSCMESLQAVADFQEVQEDWKGASTTGQRRLEVEKTELGADHPMV 612
R+AIL+AGFEDLA+GS+D+RV RLYL+L+V+PDGH TVKDAAVL +DRE EDEASVG VV+ LE WTI+R + T +M DAHS ARE L+D G VR+PA++RLV+ ISSL++LR + LK LW V+RVGGD GW R Y K +D+S+ P E+++AVA FQE QEDW GA+ T +R L VE+ +LGADHP V
Sbjct: 463 RRAILQAGFEDLAIGSDDERVQRLYLSLAVLPDGHAFTVKDAAVLLYDREPGTEDEASVGGVVEALERWTIIRSVEATYRMHDAHSNFARESLMDRGDVRRPAIKRLVRSISSLEALRSINRYTLKHLWAGVQRVGGD--GWATTRPYEKALEALDESNSPLFRETIEAVAWFQEAQEDWTGANRTWRRLLAVEEVQLGADHPYV 665
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Match: A0A6H5KLK9_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLK9_9PHAE) HSP 1 Score: 197 bits (502), Expect = 2.170e-54 Identity = 102/203 (50.25%), Postives = 143/203 (70.44%), Query Frame = 1
Query: 1 RKAILRAGFEDLAVGSEDKRVPRLYLALSVIPDGHEPTVKDAAVLPFDRELSIEDEASVGKVVDILESWTILRPKKGTCQMLDAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLR-FHESHVLKGLWRVVERVGGDDWGWDKRRRYSKEFAKVDKSDPSCMESLQAVADFQEVQEDWKGASTTGQRRLEVEKTELGADHP 606
RKA+L+AGFEDLA+GS+D+R+PRLYL+L+V+PDGH T KDA L +DR EDE S +++ LE W+ LR + G +M DAHS AR+ ++D GYVRKPA++R +SSLD LR F + VLKGLW V R+GG+ W R Y+ +++D+S+P ++SLQ++ FQ+ Q DW+ AS T +R L V++ +LGADHP
Sbjct: 439 RKAVLQAGFEDLAIGSDDERIPRLYLSLAVLPDGHAFTAKDATALLYDRAPCPEDEVSTEELIRTLERWSALRTEGGAYRMHDAHSGFARDCVMDRGYVRKPAVKRWTLRLSSLDVLRSFDDPFVLKGLWLAVGRLGGESWR--NVRPYAAALSEMDESNPLLLKSLQSLGWFQDAQGDWQSASDTCRRILAVKRRQLGADHP 639
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Match: D7FZY7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY7_ECTSI) HSP 1 Score: 187 bits (475), Expect = 1.840e-50 Identity = 106/207 (51.21%), Postives = 139/207 (67.15%), Query Frame = 1
Query: 1 RKAILRAGFEDLAVGSEDKRVPRLYLALSVIPDGHEPTVKDAAVLPFDRELSIEDEASVGKVVDILESWTILRPKKGTCQML---------DAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLRFHESHVLKGLWRVVERVGGDDWGWDKRRRYSKEFAKVDKSDPSCMESLQAVADFQEVQEDWKGASTTGQRRLEVEKTELG 594
RKA+L+AGFEDLA GS+D+RV RLYL+L+V+PDG TVKDAAVL +DR+ S EDEAS VV+ILE W++LR +G +M DAHS AREKL+D G VR+PA+ R ++ISSLD+LR H ++ LW VE+VGGD GW R Y A ++ SDP S+ AVA FQ +EDW+ A T +R L++ T++G
Sbjct: 460 RKAVLQAGFEDLASGSDDERVQRLYLSLAVLPDGRGFTVKDAAVLLYDRKPSAEDEASAAGVVEILERWSVLRSIRGCYRMAWRGGHYVLHDAHSDFAREKLMDRGDVRRPALVRWTRNISSLDTLRSVRWHDVRDLWLGVEQVGGD--GWKSTRPYEAALAGMEDSDPLLPTSVVAVAKFQRHEEDWEEAIATCRRLLDMPVTKVG 664
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Match: A0A6H5J759_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J759_9PHAE) HSP 1 Score: 161 bits (408), Expect = 3.110e-42 Identity = 91/193 (47.15%), Postives = 123/193 (63.73%), Query Frame = 1
Query: 1 RKAILRAGFEDLAVGSEDKRVPRLYLALSVIPDGHEPTVKDAAVLPFDRELSIEDEASVGKVVDILESWTILRPKKG-TCQMLDAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLRFHESHVLKGLWRVVERVGGDDWGWDKRRRYSKEFAKVDKSDPSCMESLQAVADFQEVQEDWKGASTTGQRRLEV 576
RKAIL+AG EDLA+GS+D+RV RLYL+L+V+PD V DAA+L +DR+ + EDE SV +V+D+LE W++LR M D S AR L+D G VR+ A+ R V +ISSLD++R + + LK W VE+VGG+ GWD+ A++D +P ES+ AVA E EDW+ AST R L V
Sbjct: 358 RKAILQAGLEDLAIGSDDERVQRLYLSLAVLPDDQGIQVHDAALLLYDRDPTAEDEESVARVLDVLERWSVLRSTWAYKYYMHDVQSEFARASLMDRGDVRRHALRRWVGYISSLDTVRSYNADYLKHQWLDVEKVGGE--GWDETHPCETALAEMDDPEPLLQESIAAVAKAHEAHEDWEKASTIWHRSLGV 548
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Match: A0A6H5KQ93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ93_9PHAE) HSP 1 Score: 143 bits (360), Expect = 5.020e-39 Identity = 72/118 (61.02%), Postives = 93/118 (78.81%), Query Frame = 1
Query: 1 RKAILRAGFEDLAVGSEDKRVPRLYLALSVIPDGHEPTVKDAAVLPFDRELSIEDEASVGKVVDILESWTILRPKKGTCQMLDAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLR 354
RKAIL+ GFED A+ S+D+RV R YL+L+V+PDGH ++KDAAVL DR S EDEAS G VVD+LE W+I+RP +GT +M DAH+ ARE LLD G+VR+PA++R ++ISSLD LR
Sbjct: 52 RKAILQGGFEDRAIESDDERVQRFYLSLAVMPDGHAFSLKDAAVLLDDRPPSTEDEASAGGVVDVLERWSIIRPAQGTYRMHDAHTYFARECLLDRGHVRRPALKRWTRYISSLDVLR 169
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Match: A0A6H5KJ30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ30_9PHAE) HSP 1 Score: 151 bits (382), Expect = 5.340e-38 Identity = 85/169 (50.30%), Postives = 111/169 (65.68%), Query Frame = 1
Query: 1 RKAILRAGFEDLAVGSEDKRVPRLYLALSVIPDGHEPTVKDAAVLPFDRELSIEDEASVGKVVDILESWTILRPKKGTCQML---------DAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLRFHESHVLKGLWRVVERVGGDDWGWDKRRRYSKEFAKVDKSDP 480
RKA+++AGF DLA+GS+D+RV RLYL+L+V+PDG TVKDAAVL +DR S EDEAS VV+ILE W+ L +G +M DAHS AREKL+D G V +PA+ R ++ISS+D+LR H ++ LW E+VGGD GW R Y A ++ SDP
Sbjct: 415 RKAVVQAGFGDLAIGSDDERVQRLYLSLAVLPDGRRFTVKDAAVLIYDRMPSAEDEASAAGVVEILERWSALCSIRGCYRMAWRGSHYVLHDAHSDFAREKLMDRGDVCRPALVRWTRNISSVDTLRAVRWHEVRDLWLGAEQVGGD--GWKITRPYEAALAGLEDSDP 581
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Match: A0A6H5L0N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N2_9PHAE) HSP 1 Score: 113 bits (283), Expect = 8.760e-25 Identity = 90/226 (39.82%), Postives = 113/226 (50.00%), Query Frame = 1
Query: 1 RKAILRAGFEDLA--VGSEDKRVPRLYLALSVIPDGHEPTVKDAAVLPF-DRELSIEDE--ASVG----------------KVVDILESWTILRPKKG------------TCQMLDAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLRFHESHVLKGLWRVVERVGGDDWGWDKRRRYSKEFAKVDKSDPSCMESLQAVADFQEVQEDWKGASTTGQRRLEVE 579
RKAILRAGF DL G +D R+ LYL+L+V+PDGHE TVKDAAVL D D A+ G +V+ +LE+ IL G + +M +AHS ARE LLD + A+ R V +SSLD++ F + L LW VE VGG GW R Y +D DP C L AVA F+ + DW GAS +R L VE
Sbjct: 686 RKAILRAGFRDLVSVAGDDDSRL--LYLSLAVLPDGHEFTVKDAAVLLHGDGSARCGDGIVAAAGGRGXXXXXXXXXXXXRRVLRVLEARGILTASGGRGGRRRSASSPSSFRMHEAHSAFAREILLDCPKILGWAVGRWVGFLSSLDAVLFFDPFALARLWSAVEDVGGK--GWRDGRPYETALEAIDNYDPLCRVCLVAVAKFRGAEGDWDGASLMWRRLLTVE 907
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Match: D8LJY3_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJY3_ECTSI) HSP 1 Score: 112 bits (280), Expect = 1.780e-24 Identity = 88/228 (38.60%), Postives = 111/228 (48.68%), Query Frame = 1
Query: 1 RKAILRAGFEDLA--VGSEDKRVPRLYLALSVIPDGHEPTVKDAAVLPF-DRELSIEDEASVG--------------------KVVDILESWTILRPKKG------------TCQMLDAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLRFHESHVLKGLWRVVERVGGDDWGWDKRRRYSKEFAKVDKSDPSCMESLQAVADFQEVQEDWKGASTTGQRRLEVE 579
RKAILRAGF DL G +D R+ LYL+L+V+PDGHE TVKDAAVL D D + +V+ +LE+ IL G + +M +AHS ARE LLD + A+ R V +SSLD++ F + L LW VE VGG GW R Y +D DP C L AVA F+ + DW GAS +R L VE
Sbjct: 102 RKAILRAGFRDLVGVAGDDDSRL--LYLSLAVLPDGHEFTVKDAAVLLHGDGSARCGDGMAAASAXXXXXXXXXXXXXXXXXRRVLRVLEARGILTASGGRGGRRKSTSSPSSFRMHEAHSGFAREILLDCPKILGWAVGRWVGFLSSLDAVLFFDPSALARLWSAVEDVGGK--GWRDGRPYETALEAIDNYDPLCRVCLVAVAKFRSAEGDWDGASLMWRRLLTVE 325 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.500.1 >prot_C-linearis_contig10.500.1 ID=prot_C-linearis_contig10.500.1|Name=mRNA_C-linearis_contig10.500.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=125bp MLDAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLRFHESHVLKGLWRback to top mRNA from alignment at C-linearis_contig10:1505408..1506190+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.500.1 ID=mRNA_C-linearis_contig10.500.1|Name=mRNA_C-linearis_contig10.500.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=783bp|location=Sequence derived from alignment at C-linearis_contig10:1505408..1506190+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1505408..1506190+ >mRNA_C-linearis_contig10.500.1 ID=mRNA_C-linearis_contig10.500.1|Name=mRNA_C-linearis_contig10.500.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at C-linearis_contig10:1505408..1506190+ (Chordaria linearis ClinC8C monoicous)back to top |