mRNA_C-linearis_contig10.482.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.482.1 vs. uniprot
Match: D7FZZ9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ9_ECTSI) HSP 1 Score: 563 bits (1451), Expect = 2.400e-181 Identity = 311/490 (63.47%), Postives = 358/490 (73.06%), Query Frame = 1
Query: 1 GAGVDYWEEVKLEDGSVCFYNHTSQEYSSELLTMEVTTPIDEDPAYPTDEDEYQPDGAAESNNESQLGVWEGRVWDGNDGEVFIPWPEEESQAMKTSPEADVANVERLETPEEEEEEPFTPDDPVIVREQNLRALLVLLPAKIMKDVVKAAMQGAMLHTKRTATAEAERRRRSLLSSKAQFRHTTARS----PKVEDGGTMGDEMDLPSDADREAVETTNTPGSWRNTTTQERDTIVGDKLQEVLRVLYSTSKEEARLTMRAIYLSSQGIGAAGASQLAPALKSCVVVALHLGNNAMGDKGITALVDGLRHARGLQKLHLNDNEASTITDVGCRRLANALAPLKVLSTLDLCHNPFGDKACLSLATYLSQPGCPLRSLSLAGCLDVPPAAWKTITVRDREGMAWEPPRPGDDGAVSLAAALMCPHGCPLRRLRMANAGMKSIGAKAIAAALCANHTLETIDLSGNNFGCKADDNSWESASELLSFGLQVN 1458
G VDYWEEV LEDG+VCFYNHT QEY S L + T P DE QP E ++++ L EG+VWDG DGEVF+PWP+EE M+ SP+A VA+ + LET E ++EEPFTPDDP +VREQNLRALLVLLPAK+M V+KAAM+GAMLHT+RTATA+AE+RRR LLSS+AQFRHT ++ K +DG DE + A+ E V++ TP S RNTTTQERDTIVG KLQEVLRVLYSTS EEAR+TMRAIYLSSQGIGAAGA QLAPALK CV+VALHLGNNA+GDKG+ +L DGLRHARGLQKL LSLA YLSQ GCPLRSLSLAGCLDV PAAWKTI VR +EGM W+PPRPGDDGAVSLAAAL+ PHGCPLRRLRMANAGMK+IGAKAIA ALCAN TLET+D+SGN+FG D ++WESA++LLSFGLQ +
Sbjct: 24 GTEVDYWEEVALEDGTVCFYNHTRQEYFSLLPANDATN------GCPASVDEAQPTAVGEFSHDNSLEPLEGQVWDGVDGEVFVPWPDEE---MRASPDAVVAHNKALETTEGDDEEPFTPDDPAVVREQNLRALLVLLPAKLMNGVIKAAMEGAMLHTRRTATADAEKRRRLLLSSRAQFRHTAKKNCQGDMKHKDGDGFDDETEEGPTAEGETVDSAETPDSRRNTTTQERDTIVGHKLQEVLRVLYSTSTEEARVTMRAIYLSSQGIGAAGAQQLAPALKDCVIVALHLGNNALGDKGLCSLADGLRHARGLQKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---LSLAIYLSQQGCPLRSLSLAGCLDVDPAAWKTINVRGKEGMRWDPPRPGDDGAVSLAAALISPHGCPLRRLRMANAGMKTIGAKAIATALCANRTLETVDVSGNDFGSTTDASAWESAADLLSFGLQAS 501
BLAST of mRNA_C-linearis_contig10.482.1 vs. uniprot
Match: A0A6H5KJE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJE5_9PHAE) HSP 1 Score: 236 bits (602), Expect = 7.960e-68 Identity = 134/179 (74.86%), Postives = 152/179 (84.92%), Query Frame = 1
Query: 4219 LLRGSGEEDEEGNAILPEIDDRFLTVGQRLRRLRDAREGVQREKQRAYLEYSRQVKRNIRARKRFILAEKRAGRIAQLMDTQQLVEGLKERGYSTEGSEDLDQLRRVFVEGIKPEMRVRLHATSRWTKSRNKLRERTNDAVKIGEIVARRQRLLLSMGAAQPVFAQRGVGHGVRHAATM 4755
+LRGSGEEDEEGN ILPEIDDRFLTVGQRLRRLRDAR+ ++REKQRA+LEYSRQVK N+R RKRF+LAEKRAGRIA+ MDT+QLVE LKERGY+T+GSE LDQLRRVF+EGI+PE+RVRLHATSRWTKSRNK RERT D V++GEIVARRQ+L S P VRHAAT+
Sbjct: 1 MLRGSGEEDEEGNPILPEIDDRFLTVGQRLRRLRDARDNLEREKQRAHLEYSRQVKSNLRERKRFVLAEKRAGRIAKSMDTKQLVEALKERGYATKGSEQLDQLRRVFIEGIQPEIRVRLHATSRWTKSRNKHRERT-DTVEVGEIVARRQQLTSSKRVT-PFSPSPITRLNVRHAATV 177
BLAST of mRNA_C-linearis_contig10.482.1 vs. uniprot
Match: D7FZZ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ8_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 5.730e-13 Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 1
Query: 4228 GSGEEDEEGNAILPEIDDRFLTVGQRLRRLRDAREGVQREKQRAYLEY 4371
GSGEEDEEGN ILPEIDDRFLTVGQRLRRLRDAR+ +QREK RA+++Y
Sbjct: 190 GSGEEDEEGNRILPEIDDRFLTVGQRLRRLRDARDNLQREKHRAHMKY 237
BLAST of mRNA_C-linearis_contig10.482.1 vs. uniprot
Match: UPI0007A6E2E8 (ribonuclease inhibitor n=1 Tax=Miniopterus natalensis TaxID=291302 RepID=UPI0007A6E2E8) HSP 1 Score: 69.7 bits (169), Expect = 2.650e-8 Identity = 61/181 (33.70%), Postives = 78/181 (43.09%), Query Frame = 1
Query: 856 LHLGNNAMGDKGITALVDGLRHARG-LQKLHLNDNEASTITDVGCRRLANALAPLKVLSTLDLCHNPFGDKACLSLATYLSQPGCPLRSLSLAGC----LDVPPAAWKTITVRDREGMAWEPPRPGDDGAVSLAAALMCPHGCPLRRLRMANAGMKSIGAKAIAAALCANHTLETIDLSGN 1383
L LGNN +GD GIT L GL L+ L L + + IT GCR L L + L L L N G++ L L QP C L SL + C P R + + GD G L L P G LR L + + + G ++AA L ANH+L +DLS N
Sbjct: 236 LELGNNKLGDAGITELCPGLLSPSSRLKTLWLWECD---ITVSGCRDLCRVLRAKESLKELSLAGNAVGNEGIQLLCESLVQPSCQLESLWVKSCSLTAACCPRVGAMLAQNRSLQELQMSSNNLGDVGVEELCQGLRQP-GTTLRALWLGDCEVTDQGCHSLAALLLANHSLRELDLSNN 412
BLAST of mRNA_C-linearis_contig10.482.1 vs. uniprot
Match: UPI0018F73B25 (NACHT, LRR and PYD domains-containing protein 3-like isoform X1 n=4 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F73B25) HSP 1 Score: 69.7 bits (169), Expect = 5.020e-8 Identity = 63/215 (29.30%), Postives = 98/215 (45.58%), Query Frame = 1
Query: 763 TMRAIYLSSQGIGAAGASQLAPALKSCVVVALHLGNNAMGDKGITALVDGLRHAR-GLQKLHLNDNEASTITDVGCRRLANALAPLKVLSTLDLCHNPFGDKACLSLATYLSQPGCPLRSLSLAGCLDVPPAAWKTITVRDREGMAWE----PPRPGDDGAVSLAAALMCPHGCPLRRLRMANAGMKSIGAKAIAAALCANHTLETIDLSGNNFG 1392
T++ + L + I G +L P L C V L LGNN +GD G+ L LR+ +QKL LN N T+TD + LA L+ ++L LDL +N GD +L+ L C L+ L L + A ++ E + GD G L+ AL P C +++L + + A+ + + L N +L ++L+ N G
Sbjct: 705 TIKELDLENCCIQCEGLQRLGPILHKCQV--LRLGNNKLGDPGVKLLSVALRNPDCKIQKLGLNSN---TLTDSCTQDLALLLSANRLLKDLDLGNNKLGDSGVTALSVALRDLACKLQKLELYENILTDSCAQDLASILSTNQSLMELNLGNNKLGDSGVKLLSVALRTPD-CKIQKLLLYKNHVSHSCAEDLVSVLSTNRSLTVLNLNNNKLG 913
BLAST of mRNA_C-linearis_contig10.482.1 vs. uniprot
Match: H0WCD9_CAVPO (NLR family pyrin domain containing 3 n=1 Tax=Cavia porcellus TaxID=10141 RepID=H0WCD9_CAVPO) HSP 1 Score: 65.5 bits (158), Expect = 9.890e-7 Identity = 49/140 (35.00%), Postives = 68/140 (48.57%), Query Frame = 1
Query: 763 TMRAIYLSSQGIGAAGASQLAPALK-SCVVVALHLGNNAMGDKGITALVDGLRHARG-LQKLHLNDNEASTITDVGCRRLANALAPLKVLSTLDLCHNPFGDKACLSLATYLSQPGCPLRSLSLAGCLDVPPAAWKTITV 1176
T+ ++L S G+ +A LA L SC + L++G NA+GD G++ L + LQKL L + S +T +GC LA+ L + L+ L L N GD L L PGC LR L L C + W TV
Sbjct: 809 TLNKLWLVSCGLTSACCEDLASVLSTSCSLTRLYIGENALGDTGVSTLCGKAQWQESHLQKLGLVN---SGLTFMGCSALASVLRTTRSLTHLYLRGNALGDAGLKLLCEGLLHPGCELRMLELDNCSLTSHSCWDLSTV 945
BLAST of mRNA_C-linearis_contig10.482.1 vs. uniprot
Match: UPI001B34E47E (NACHT, LRR and PYD domains-containing protein 3 n=5 Tax=Ochotona TaxID=9977 RepID=UPI001B34E47E) HSP 1 Score: 64.3 bits (155), Expect = 2.240e-6 Identity = 51/148 (34.46%), Postives = 70/148 (47.30%), Query Frame = 1
Query: 856 LHLGNNAMGDKGITALVDGLRHAR-GLQKLHLNDNEASTITDVGCRRLANALAPLKVLSTLDLCHNPFGDKACLSLATYLSQPGCPLRSLSLAGCLDVPPAAWKTITV----RDREGMAWEPPRPGDDGAVSLAAALMCPHGCPLRRL 1284
L+LG NA+GD G++ L D L+H + L+KL L +S +T V C ++ AL K L+ L L N GD L L P C L+ L L C W + R + ++ GD G + L L P GCPL+RL
Sbjct: 860 LYLGENALGDDGVSLLCDKLKHPQCSLRKLGL---VSSGLTSVCCAAISAALGSSKSLTHLYLRGNALGDNGLKLLCQGLLHPSCRLQMLELDSCSLSSHCCWDLCRLLTSNRSLQKLSLGSNDLGDLGVMMLCEVLRQP-GCPLQRL 1003
BLAST of mRNA_C-linearis_contig10.482.1 vs. uniprot
Match: UPI001CFE1C66 (NACHT, LRR and PYD domains-containing protein 12-like n=1 Tax=Gracilinanus agilis TaxID=191870 RepID=UPI001CFE1C66) HSP 1 Score: 59.7 bits (143), Expect = 5.840e-5 Identity = 70/242 (28.93%), Postives = 102/242 (42.15%), Query Frame = 1
Query: 847 VVALHLGNNAMGDKGITALVDGLRHAR-GLQKLHLN----DNEASTITDVGCRRLANALAPLKVLSTLDLCHNPFGDKACLSLATYLSQPGCPLRSLSLAGCLDVPPAAWKTITVRDREGMAWEPPRP----GDDGAVSLAAALMCPHGCPLRRLRMANAGMKSIGAKAIAAALCANHTLETIDLSGNNFGCKADDNSWESASELLSFGLQ-VNRTVHTIVLRACGLR----REQVFAIQAN 1530
++ L L N +G G+ L +GLRH + LQ L L D EA C+ L+ L+ + L+ LDL N GD L LS C L++L L C P A +V E GD G SL L C L+ LR+ + + +A++ L +N L+ +D+S N+ + LL GLQ N +H + L +C L R+ A+ AN
Sbjct: 784 LIRLDLSRNILGATGVRLLCEGLRHPKCRLQMLQLRRCQVDGEA-------CQELSKVLSTSQHLTELDLTGNALGDLGLQFLCPGLSHSACKLQTLWLKICHLTPAACQNLSSVLSTSQNLTELDLSLNDLGDAGVKSLCEGL-CHSKSQLQTLRLGICRLTFVSCEALSTTLQSNVHLKALDVSFNDLE--------DMGVHLLCEGLQHPNCKLHKLWLDSCCLSGAACRDLASALGAN 1009 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.482.1 >prot_C-linearis_contig10.482.1 ID=prot_C-linearis_contig10.482.1|Name=mRNA_C-linearis_contig10.482.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1553bp MEVTTPIDEDPAYPTDEDEYQPDGAAESNNESQLGVWEGRVWDGNDGEVFback to top mRNA from alignment at C-linearis_contig10:1128885..1143909+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.482.1 ID=mRNA_C-linearis_contig10.482.1|Name=mRNA_C-linearis_contig10.482.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=15025bp|location=Sequence derived from alignment at C-linearis_contig10:1128885..1143909+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1128885..1143909+ >mRNA_C-linearis_contig10.482.1 ID=mRNA_C-linearis_contig10.482.1|Name=mRNA_C-linearis_contig10.482.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=9318bp|location=Sequence derived from alignment at C-linearis_contig10:1128885..1143909+ (Chordaria linearis ClinC8C monoicous)back to top |